RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 STAC3Q96MF2 364 aa6.93□□□□□ -1.3
CD44-238ENST00000534296 ADAM33Q9BZ11 813 aa6.93□□□□□ -1.3
CD44-238ENST00000534296 PPP1R3GB7ZBB8 358 aa6.92□□□□□ -1.3
CD44-238ENST00000534296 ANKRD13DQ6ZTN6 518 aa6.92□□□□□ -1.3
CD44-238ENST00000534296 SEMA3EO15041 775 aa6.91□□□□□ -1.3
CD44-238ENST00000534296 CERKQ8TCT0 537 aa6.91□□□□□ -1.3
CD44-238ENST00000534296 AXIN2Q9Y2T1 843 aa6.91□□□□□ -1.3
CD44-238ENST00000534296 PSEN2P49810 448 aa6.9□□□□□ -1.3
CD44-238ENST00000534296 C6orf132Q5T0Z8 1188 aa6.9□□□□□ -1.3
CD44-238ENST00000534296 KRTAP3-3Q9BYR6 98 aa6.9□□□□□ -1.3
CD44-238ENST00000534296 KRTAP3-2Q9BYR7 98 aa6.9□□□□□ -1.3
CD44-238ENST00000534296 TK2O00142 265 aa6.89□□□□□ -1.31
CD44-238ENST00000534296 TESPA1A2RU30 521 aaPredicted RBP6.88□□□□□ -1.31
CD44-238ENST00000534296 OSBPP22059 807 aa6.88□□□□□ -1.31
CD44-238ENST00000534296 MLLT3P42568 568 aaPredicted RBP6.88□□□□□ -1.31
CD44-238ENST00000534296 ADGRD1Q6QNK2 874 aa6.88□□□□□ -1.31
CD44-238ENST00000534296 SLC4A5Q9BY07 1137 aa6.87□□□□□ -1.31
CD44-238ENST00000534296 NBPF3Q9H094 633 aa6.87□□□□□ -1.31
CD44-238ENST00000534296 POTEEQ6S8J3 1075 aa6.86□□□□□ -1.31
CD44-238ENST00000534296 NUTM2FA1L443 756 aa6.85□□□□□ -1.31
CD44-238ENST00000534296 TSR1Q2NL82 804 aaKnown RBP6.85□□□□□ -1.31
CD44-238ENST00000534296 DMRTA1Q5VZB9 504 aa6.85□□□□□ -1.31
CD44-238ENST00000534296 GOLGA8CPA6NN73 597 aa6.84□□□□□ -1.31
CD44-238ENST00000534296 ONECUT3O60422 494 aaPredicted RBP6.84□□□□□ -1.31
CD44-238ENST00000534296 PACS2Q86VP3 889 aa6.84□□□□□ -1.31
CD44-238ENST00000534296 ZBED2Q9BTP6 218 aa6.84□□□□□ -1.31
CD44-238ENST00000534296 VPS9D1Q9Y2B5 631 aa6.84□□□□□ -1.31
CD44-238ENST00000534296 COL9A1P20849 921 aa6.83□□□□□ -1.32
CD44-238ENST00000534296 RBM27Q9P2N5 1060 aaKnown RBP6.83□□□□□ -1.32
CD44-238ENST00000534296 TRIM6-TRIM34B2RNG4 842 aa6.82□□□□□ -1.32
CD44-238ENST00000534296 FCHSD2O94868 740 aa6.82□□□□□ -1.32
CD44-238ENST00000534296 MRPL50Q8N5N7 158 aaKnown RBP6.82□□□□□ -1.32
CD44-238ENST00000534296 RABGEF1Q9UJ41 708 aa6.82□□□□□ -1.32
CD44-238ENST00000534296 MYT1LQ9UL68 1186 aa6.82□□□□□ -1.32
CD44-238ENST00000534296 NBPF26B4DH59 902 aa6.81□□□□□ -1.32
CD44-238ENST00000534296 PRSS12P56730 875 aa6.81□□□□□ -1.32
CD44-238ENST00000534296 GPIHBP1Q8IV16 184 aa6.81□□□□□ -1.32
CD44-238ENST00000534296 CDCA7LQ96GN5 454 aa6.81□□□□□ -1.32
CD44-238ENST00000534296 BCANQ96GW7 911 aa6.81□□□□□ -1.32
CD44-238ENST00000534296 PROX2Q3B8N5 592 aa6.8□□□□□ -1.32
CD44-238ENST00000534296 CDHR5Q9HBB8 845 aa6.8□□□□□ -1.32
CD44-238ENST00000534296 PRIM1P49642 420 aaKnown RBP6.79□□□□□ -1.32
CD44-238ENST00000534296 RBM26Q5T8P6 1007 aaKnown RBP6.79□□□□□ -1.32
CD44-238ENST00000534296 LAPTM4BQ86VI4 370 aa6.79□□□□□ -1.32
CD44-238ENST00000534296 RNF166Q96A37 237 aaPredicted RBP6.79□□□□□ -1.32
CD44-238ENST00000534296 KIAA1468Q9P260 1216 aa6.79□□□□□ -1.32
CD44-238ENST00000534296 HRO43593 1189 aa6.78□□□□□ -1.32
CD44-238ENST00000534296 PTGDRQ13258 359 aa6.78□□□□□ -1.32
CD44-238ENST00000534296 HIC1Q14526 733 aa6.78□□□□□ -1.32
CD44-238ENST00000534296 HDGFP51858 240 aaKnown RBP6.77□□□□□ -1.33
CD44-238ENST00000534296 SLC4A3P48751 1232 aa6.76□□□□□ -1.33
CD44-238ENST00000534296 PADI6Q6TGC4 694 aa6.76□□□□□ -1.33
CD44-238ENST00000534296 ANKK1Q8NFD2 765 aa6.76□□□□□ -1.33
CD44-238ENST00000534296 BHMG1C9JSJ3 638 aaPredicted RBP6.75□□□□□ -1.33
CD44-238ENST00000534296 FAM98CQ17RN3 349 aaKnown RBP6.75□□□□□ -1.33
CD44-238ENST00000534296 LMOD2Q6P5Q4 547 aa6.75□□□□□ -1.33
CD44-238ENST00000534296 NPDC1Q9NQX5 325 aaPredicted RBP6.75□□□□□ -1.33
CD44-238ENST00000534296 TSKSQ9UJT2 592 aa6.75□□□□□ -1.33
CD44-238ENST00000534296 PNMA3Q9UL41 463 aa6.75□□□□□ -1.33
CD44-238ENST00000534296 GNPATO15228 680 aa6.74□□□□□ -1.33
CD44-238ENST00000534296 RBM46Q8TBY0 533 aaKnown RBP6.74□□□□□ -1.33
CD44-238ENST00000534296 TATDN2Q93075 761 aa6.74□□□□□ -1.33
CD44-238ENST00000534296 WNT2BQ93097 391 aa6.74□□□□□ -1.33
CD44-238ENST00000534296 SEPT9Q9UHD8 586 aaPredicted RBP6.74□□□□□ -1.33
CD44-238ENST00000534296 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.73□□□□□ -1.33
CD44-238ENST00000534296 KCTD12Q96CX2 325 aaKnown RBP6.73□□□□□ -1.33
CD44-238ENST00000534296 OATP04181 439 aa6.72□□□□□ -1.33
CD44-238ENST00000534296 NUDT18Q6ZVK8 323 aa6.72□□□□□ -1.33
CD44-238ENST00000534296 TTC13Q8NBP0 860 aa6.72□□□□□ -1.33
CD44-238ENST00000534296 NECTIN2Q92692 538 aa6.72□□□□□ -1.33
CD44-238ENST00000534296 LRCH3Q96II8 777 aa6.71□□□□□ -1.34
CD44-238ENST00000534296 ZFRQ96KR1 1074 aaKnown RBP6.71□□□□□ -1.34
CD44-238ENST00000534296 HCSTQ9UBK5 93 aa6.71□□□□□ -1.34
CD44-238ENST00000534296 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.7□□□□□ -1.34
CD44-238ENST00000534296 SMAPO00193 183 aa6.69□□□□□ -1.34
CD44-238ENST00000534296 DNAJB2P25686 324 aa6.69□□□□□ -1.34
CD44-238ENST00000534296 GPR37O15354 613 aa6.68□□□□□ -1.34
CD44-238ENST00000534296 RNF40O75150 1001 aa6.68□□□□□ -1.34
CD44-238ENST00000534296 MAP2K5Q13163 448 aa6.68□□□□□ -1.34
CD44-238ENST00000534296 THSD4Q6ZMP0 1018 aa6.68□□□□□ -1.34
CD44-238ENST00000534296 SLF2Q8IX21 1173 aa6.68□□□□□ -1.34
CD44-238ENST00000534296 FAM198AQ9UFP1 575 aa6.68□□□□□ -1.34
CD44-238ENST00000534296 ADGRG1Q9Y653 693 aa6.68□□□□□ -1.34
CD44-238ENST00000534296 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.67□□□□□ -1.34
CD44-238ENST00000534296 SOWAHBA6NEL2 793 aa6.67□□□□□ -1.34
CD44-238ENST00000534296 NYAP1Q6ZVC0 841 aa6.67□□□□□ -1.34
CD44-238ENST00000534296 KRI1Q8N9T8 703 aaKnown RBP6.67□□□□□ -1.34
CD44-238ENST00000534296 PTPN5P54829 565 aa6.66□□□□□ -1.34
CD44-238ENST00000534296 RSPH4AQ5TD94 716 aa6.66□□□□□ -1.34
CD44-238ENST00000534296 SAMD7Q7Z3H4 446 aa6.66□□□□□ -1.34
CD44-238ENST00000534296 MINK1Q8N4C8 1332 aaPredicted RBP6.66□□□□□ -1.34
CD44-238ENST00000534296 PPP4CP60510 307 aa6.65□□□□□ -1.34
CD44-238ENST00000534296 EYA1Q99502 592 aa6.65□□□□□ -1.34
CD44-238ENST00000534296 TSR3Q9UJK0 312 aaKnown RBP6.65□□□□□ -1.34
CD44-238ENST00000534296 RCCD1A6NED2 376 aa6.64□□□□□ -1.35
CD44-238ENST00000534296 BCAMP50895 628 aa6.64□□□□□ -1.35
CD44-238ENST00000534296 METTL3Q86U44 580 aaKnown RBP6.64□□□□□ -1.35
CD44-238ENST00000534296 PXYLP1Q8TE99 480 aa6.64□□□□□ -1.35
CD44-238ENST00000534296 ZC3H15Q8WU90 426 aaKnown RBP6.64□□□□□ -1.35
CD44-238ENST00000534296 PRR14Q9BWN1 585 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms