RNA–Protein interactions for RNA: ENST00000531867.1

PUM1-222, Transcript of pumilio RNA binding family member 1, human

TSL 4

Gene PUM1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM1-222	ENST00000531867	P3H3	Q8IVL6	736 aa		11.26	□□□□□ -0.61
PUM1-222	ENST00000531867	JPH4	Q96JJ6	628 aa		11.26	□□□□□ -0.61
PUM1-222	ENST00000531867	PDIA6	Q15084	440 aa		11.24	□□□□□ -0.61
PUM1-222	ENST00000531867	ZNF454	Q8N9F8	522 aa		11.24	□□□□□ -0.61
PUM1-222	ENST00000531867	KRTAP3-3	Q9BYR6	98 aa		11.24	□□□□□ -0.61
PUM1-222	ENST00000531867	KRTAP3-2	Q9BYR7	98 aa		11.24	□□□□□ -0.61
PUM1-222	ENST00000531867	FOSB	P53539	338 aa		11.23	□□□□□ -0.61
PUM1-222	ENST00000531867	RIMBP3C	A6NJZ7	1639 aa		11.23	□□□□□ -0.61
PUM1-222	ENST00000531867	RIMBP3B	A6NNM3	1639 aa		11.23	□□□□□ -0.61
PUM1-222	ENST00000531867	RIMBP3	Q9UFD9	1639 aa		11.23	□□□□□ -0.61
PUM1-222	ENST00000531867	KCNH8	Q96L42	1107 aa		11.22	□□□□□ -0.61
PUM1-222	ENST00000531867	MROH2B	Q7Z745	1585 aa		11.2	□□□□□ -0.62
PUM1-222	ENST00000531867	ARHGEF1	Q92888	912 aa	Known RBP	11.2	□□□□□ -0.62
PUM1-222	ENST00000531867	PTGER2	P43116	358 aa		11.19	□□□□□ -0.62
PUM1-222	ENST00000531867	KCNV2	Q8TDN2	545 aa		11.19	□□□□□ -0.62
PUM1-222	ENST00000531867	ARHGAP33	O14559	1287 aa		11.18	□□□□□ -0.62
PUM1-222	ENST00000531867	PHF14	O94880	888 aa		11.18	□□□□□ -0.62
PUM1-222	ENST00000531867	VSIG10	Q8N0Z9	540 aa		11.18	□□□□□ -0.62
PUM1-222	ENST00000531867	FBXW7	Q969H0	707 aa		11.18	□□□□□ -0.62
PUM1-222	ENST00000531867	ZDHHC16	Q969W1	377 aa		11.18	□□□□□ -0.62
PUM1-222	ENST00000531867	BCL2L12	Q9HB09	334 aa		11.18	□□□□□ -0.62
PUM1-222	ENST00000531867	CEP164	Q9UPV0	1460 aa		11.18	□□□□□ -0.62
PUM1-222	ENST00000531867	EPAS1	Q99814	870 aa		11.17	□□□□□ -0.62
PUM1-222	ENST00000531867	TYW1B	Q6NUM6	668 aa		11.16	□□□□□ -0.62
PUM1-222	ENST00000531867	ARHGEF11	O15085	1522 aa		11.15	□□□□□ -0.62
PUM1-222	ENST00000531867	LSM11	P83369	360 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
PUM1-222	ENST00000531867	PCDHGA10	Q9Y5H3	936 aa		11.15	□□□□□ -0.62
PUM1-222	ENST00000531867	FANCD2	Q9BXW9	1451 aa		11.14	□□□□□ -0.63
PUM1-222	ENST00000531867	PTPRE	P23469	700 aa		11.13	□□□□□ -0.63
PUM1-222	ENST00000531867	POTEE	Q6S8J3	1075 aa		11.13	□□□□□ -0.63
PUM1-222	ENST00000531867	DDX12P	Q92771	950 aa		11.12	□□□□□ -0.63
PUM1-222	ENST00000531867	KCNK17	Q96T54	332 aa		11.12	□□□□□ -0.63
PUM1-222	ENST00000531867	AXIN2	Q9Y2T1	843 aa		11.12	□□□□□ -0.63
PUM1-222	ENST00000531867	ANKRD13D	Q6ZTN6	518 aa		11.1	□□□□□ -0.63
PUM1-222	ENST00000531867	SPNS2	Q8IVW8	549 aa		11.1	□□□□□ -0.63
PUM1-222	ENST00000531867	ADAM33	Q9BZ11	813 aa		11.1	□□□□□ -0.63
PUM1-222	ENST00000531867	PLSCR2	Q9NRY7	297 aa		11.1	□□□□□ -0.63
PUM1-222	ENST00000531867	KDM2A	Q9Y2K7	1162 aa		11.1	□□□□□ -0.63
PUM1-222	ENST00000531867	CFTR	P13569	1480 aa		11.1	□□□□□ -0.63
PUM1-222	ENST00000531867	URB2	Q14146	1524 aa	Known RBP	11.09	□□□□□ -0.63
PUM1-222	ENST00000531867	NBR1	Q14596	966 aa		11.09	□□□□□ -0.63
PUM1-222	ENST00000531867	TK2	O00142	265 aa		11.08	□□□□□ -0.64
PUM1-222	ENST00000531867	PSEN2	P49810	448 aa		11.08	□□□□□ -0.64
PUM1-222	ENST00000531867	PPP1R3G	B7ZBB8	358 aa		11.06	□□□□□ -0.64
PUM1-222	ENST00000531867	EN1	Q05925	392 aa	Predicted RBP	11.06	□□□□□ -0.64
PUM1-222	ENST00000531867	GRXCR2	A6NFK2	248 aa		11.05	□□□□□ -0.64
PUM1-222	ENST00000531867	DMRTA1	Q5VZB9	504 aa		11.05	□□□□□ -0.64
PUM1-222	ENST00000531867	CYB5RL	Q6IPT4	315 aa		11.05	□□□□□ -0.64
PUM1-222	ENST00000531867	ADGRD1	Q6QNK2	874 aa		11.05	□□□□□ -0.64
PUM1-222	ENST00000531867	SLC4A5	Q9BY07	1137 aa		11.05	□□□□□ -0.64
PUM1-222	ENST00000531867	WIZ	O95785	1651 aa		11.03	□□□□□ -0.64
PUM1-222	ENST00000531867	MAP3K7	O43318	606 aa		11.02	□□□□□ -0.65
PUM1-222	ENST00000531867	C6orf132	Q5T0Z8	1188 aa		11.02	□□□□□ -0.65
PUM1-222	ENST00000531867	RBM33	Q96EV2	1170 aa	Known RBP	11.02	□□□□□ -0.65
PUM1-222	ENST00000531867	ARAP1	Q96P48	1450 aa		11.01	□□□□□ -0.65
PUM1-222	ENST00000531867	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.01	□□□□□ -0.65
PUM1-222	ENST00000531867	MMRN1	Q13201	1228 aa		11.01	□□□□□ -0.65
PUM1-222	ENST00000531867	IFT140	Q96RY7	1462 aa		11	□□□□□ -0.65
PUM1-222	ENST00000531867	ZBED2	Q9BTP6	218 aa		11	□□□□□ -0.65
PUM1-222	ENST00000531867	MYT1L	Q9UL68	1186 aa		10.99	□□□□□ -0.65
PUM1-222	ENST00000531867	VPS9D1	Q9Y2B5	631 aa		10.99	□□□□□ -0.65
PUM1-222	ENST00000531867	OSBP	P22059	807 aa		10.98	□□□□□ -0.65
PUM1-222	ENST00000531867	CERK	Q8TCT0	537 aa		10.97	□□□□□ -0.65
PUM1-222	ENST00000531867	STAC3	Q96MF2	364 aa		10.97	□□□□□ -0.65
PUM1-222	ENST00000531867	RSF1	Q96T23	1441 aa	Predicted RBP	10.97	□□□□□ -0.65
PUM1-222	ENST00000531867	HR	O43593	1189 aa		10.96	□□□□□ -0.65
PUM1-222	ENST00000531867	COL9A1	P20849	921 aa		10.96	□□□□□ -0.65
PUM1-222	ENST00000531867	MLLT3	P42568	568 aa	Predicted RBP	10.96	□□□□□ -0.65
PUM1-222	ENST00000531867	SEMA3E	O15041	775 aa		10.95	□□□□□ -0.66
PUM1-222	ENST00000531867	TSR1	Q2NL82	804 aa	Known RBP	10.95	□□□□□ -0.66
PUM1-222	ENST00000531867	SMYD5	Q6GMV2	418 aa		10.95	□□□□□ -0.66
PUM1-222	ENST00000531867	ONECUT3	O60422	494 aa	Predicted RBP	10.94	□□□□□ -0.66
PUM1-222	ENST00000531867	RNF166	Q96A37	237 aa	Predicted RBP	10.94	□□□□□ -0.66
PUM1-222	ENST00000531867	NBPF3	Q9H094	633 aa		10.94	□□□□□ -0.66
PUM1-222	ENST00000531867	PRDM2	Q13029	1718 aa		10.94	□□□□□ -0.66
PUM1-222	ENST00000531867	CHD1	O14646	1710 aa		10.93	□□□□□ -0.66
PUM1-222	ENST00000531867	PRIM1	P49642	420 aa	Known RBP	10.93	□□□□□ -0.66
PUM1-222	ENST00000531867	EIF4G3	O43432	1585 aa	Known RBP	10.92	□□□□□ -0.66
PUM1-222	ENST00000531867	TESPA1	A2RU30	521 aa	Predicted RBP	10.92	□□□□□ -0.66
PUM1-222	ENST00000531867	RABGEF1	Q9UJ41	708 aa		10.92	□□□□□ -0.66
PUM1-222	ENST00000531867	TRIM6-TRIM34	B2RNG4	842 aa		10.9	□□□□□ -0.66
PUM1-222	ENST00000531867	PROX2	Q3B8N5	592 aa		10.9	□□□□□ -0.66
PUM1-222	ENST00000531867	TOPBP1	Q92547	1522 aa		10.89	□□□□□ -0.67
PUM1-222	ENST00000531867	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.89	□□□□□ -0.67
PUM1-222	ENST00000531867	MRPL50	Q8N5N7	158 aa	Known RBP	10.88	□□□□□ -0.67
PUM1-222	ENST00000531867	CDHR5	Q9HBB8	845 aa		10.88	□□□□□ -0.67
PUM1-222	ENST00000531867	RBM27	Q9P2N5	1060 aa	Known RBP	10.88	□□□□□ -0.67
PUM1-222	ENST00000531867	TOP2A	P11388	1531 aa	Known RBP	10.88	□□□□□ -0.67
PUM1-222	ENST00000531867	ABCC8	Q09428	1581 aa		10.86	□□□□□ -0.67
PUM1-222	ENST00000531867	TULP1	O00294	542 aa	Predicted RBP	10.86	□□□□□ -0.67
PUM1-222	ENST00000531867	PRSS12	P56730	875 aa		10.86	□□□□□ -0.67
PUM1-222	ENST00000531867	PACS2	Q86VP3	889 aa		10.86	□□□□□ -0.67
PUM1-222	ENST00000531867	TARBP1	Q13395	1621 aa	Known RBP	10.86	□□□□□ -0.67
PUM1-222	ENST00000531867	GOLGA8CP	A6NN73	597 aa		10.85	□□□□□ -0.67
PUM1-222	ENST00000531867	LAPTM4B	Q86VI4	370 aa		10.85	□□□□□ -0.67
PUM1-222	ENST00000531867	CDCA7L	Q96GN5	454 aa		10.85	□□□□□ -0.67
PUM1-222	ENST00000531867	AQR	O60306	1485 aa	Known RBP eCLIP	10.85	□□□□□ -0.67	5e-9	■■■■□ 19.6
PUM1-222	ENST00000531867	KIAA1468	Q9P260	1216 aa		10.84	□□□□□ -0.67
PUM1-222	ENST00000531867	CLASP1	Q7Z460	1538 aa		10.84	□□□□□ -0.67
PUM1-222	ENST00000531867	NUTM2F	A1L443	756 aa		10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 125.5 ms