RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 FAM135AQ9P2D6 1515 aa26.34■■□□□ 1.81
PCF11-203ENST00000530304 RNF123Q5XPI4 1314 aa26.33■■□□□ 1.81
PCF11-203ENST00000530304 RSPH4AQ5TD94 716 aa26.32■■□□□ 1.8
PCF11-203ENST00000530304 SENP3-EIF4A1A0A087X0R7 540 aa26.31■■□□□ 1.8
PCF11-203ENST00000530304 PREX2Q70Z35 1606 aa26.31■■□□□ 1.8
PCF11-203ENST00000530304 MYBBP1AQ9BQG0 1328 aaKnown RBP26.29■■□□□ 1.8
PCF11-203ENST00000530304 KTN1Q86UP2 1357 aaKnown RBP26.28■■□□□ 1.8
PCF11-203ENST00000530304 RALBP1Q15311 655 aa26.28■■□□□ 1.8
PCF11-203ENST00000530304 BRD4O60885 1362 aaPredicted RBP26.27■■□□□ 1.8
PCF11-203ENST00000530304 LRPPRCP42704 1394 aaKnown RBP26.27■■□□□ 1.8
PCF11-203ENST00000530304 E9PCH4 1651 aa26.27■■□□□ 1.8
PCF11-203ENST00000530304 CCDC144AA2RUR9 1427 aa26.26■■□□□ 1.79
PCF11-203ENST00000530304 PRAG1Q86YV5 1406 aa26.25■■□□□ 1.79
PCF11-203ENST00000530304 TRPM1Q7Z4N2 1603 aa26.23■■□□□ 1.79
PCF11-203ENST00000530304 SYCP2Q9BX26 1530 aa26.23■■□□□ 1.79
PCF11-203ENST00000530304 RGL3Q3MIN7 710 aa26.22■■□□□ 1.79
PCF11-203ENST00000530304 ERICH6Q7L0X2 663 aa26.2■■□□□ 1.79
PCF11-203ENST00000530304 NBPF1Q3BBV0 1214 aa26.19■■□□□ 1.78
PCF11-203ENST00000530304 CCDC136Q96JN2 1154 aa26.19■■□□□ 1.78
PCF11-203ENST00000530304 PLA2R1Q13018 1463 aa26.19■■□□□ 1.78
PCF11-203ENST00000530304 ARHGAP5Q13017 1502 aa26.19■■□□□ 1.78
PCF11-203ENST00000530304 UNC13BO14795 1591 aa26.19■■□□□ 1.78
PCF11-203ENST00000530304 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.18■■□□□ 1.783e-8■■■■□ 26.5
PCF11-203ENST00000530304 MAST1Q9Y2H9 1570 aa26.18■■□□□ 1.78
PCF11-203ENST00000530304 TTC37Q6PGP7 1564 aa26.18■■□□□ 1.78
PCF11-203ENST00000530304 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.16■■□□□ 1.782e-39■□□□□ 9.9
PCF11-203ENST00000530304 A2MP01023 1474 aa26.15■■□□□ 1.78
PCF11-203ENST00000530304 GPRASP1Q5JY77 1395 aa26.14■■□□□ 1.78
PCF11-203ENST00000530304 PARD3Q8TEW0 1356 aa26.14■■□□□ 1.78
PCF11-203ENST00000530304 NLRP13Q86W25 1043 aa26.14■■□□□ 1.77
PCF11-203ENST00000530304 PER1O15534 1290 aaPredicted RBP26.13■■□□□ 1.77
PCF11-203ENST00000530304 PLEKHH2Q8IVE3 1493 aa26.11■■□□□ 1.77
PCF11-203ENST00000530304 IQGAP3Q86VI3 1631 aa26.1■■□□□ 1.77
PCF11-203ENST00000530304 CHD1O14646 1710 aa26.09■■□□□ 1.77
PCF11-203ENST00000530304 PLXNC1O60486 1568 aa26.09■■□□□ 1.77
PCF11-203ENST00000530304 PRDM15P57071 1507 aaPredicted RBP26.08■■□□□ 1.77
PCF11-203ENST00000530304 TESK2Q96S53 571 aa26.08■■□□□ 1.77
PCF11-203ENST00000530304 LAMC1P11047 1609 aa26.07■■□□□ 1.76
PCF11-203ENST00000530304 COL17A1Q9UMD9 1497 aaPredicted RBP26.07■■□□□ 1.76
PCF11-203ENST00000530304 MYO5CQ9NQX4 1742 aa26.07■■□□□ 1.76
PCF11-203ENST00000530304 SHROOM2Q13796 1616 aa26.06■■□□□ 1.76
PCF11-203ENST00000530304 DISP3Q9P2K9 1392 aa26.06■■□□□ 1.76
PCF11-203ENST00000530304 SALL2Q9Y467 1007 aaPredicted RBP26.05■■□□□ 1.76
PCF11-203ENST00000530304 DUOX2Q9NRD8 1548 aa26.04■■□□□ 1.76
PCF11-203ENST00000530304 RRP1P56182 461 aaKnown RBP26.04■■□□□ 1.76
PCF11-203ENST00000530304 WASHC2CQ9Y4E1 1318 aa26.03■■□□□ 1.76
PCF11-203ENST00000530304 ABCC2Q92887 1545 aa26.03■■□□□ 1.76
PCF11-203ENST00000530304 ATP10AO60312 1499 aa26.02■■□□□ 1.76
PCF11-203ENST00000530304 EIF2AK4Q9P2K8 1649 aaKnown RBP26.02■■□□□ 1.76
PCF11-203ENST00000530304 RCAN3Q9UKA8 241 aa26.01■■□□□ 1.76
PCF11-203ENST00000530304 CC2D1BQ5T0F9 858 aaKnown RBP26.01■■□□□ 1.75
PCF11-203ENST00000530304 ERBINQ96RT1 1412 aa26.01■■□□□ 1.75
PCF11-203ENST00000530304 PDE3BQ13370 1112 aa26.01■■□□□ 1.75
PCF11-203ENST00000530304 MAGI2Q86UL8 1455 aa26■■□□□ 1.75
PCF11-203ENST00000530304 PANK3Q9H999 370 aa26■■□□□ 1.75
PCF11-203ENST00000530304 ERCC6L2Q5T890 1561 aa25.99■■□□□ 1.75
PCF11-203ENST00000530304 TMF1P82094 1093 aa25.98■■□□□ 1.75
PCF11-203ENST00000530304 EXOC6Q8TAG9 804 aa25.96■■□□□ 1.75
PCF11-203ENST00000530304 PLCH2O75038 1416 aa25.95■■□□□ 1.75
PCF11-203ENST00000530304 NOP58Q9Y2X3 529 aaKnown RBP25.94■■□□□ 1.74
PCF11-203ENST00000530304 CDCA7LQ96GN5 454 aa25.93■■□□□ 1.74
PCF11-203ENST00000530304 BCL11AQ9H165 835 aa25.93■■□□□ 1.74
PCF11-203ENST00000530304 EFCAB2Q5VUJ9 269 aa25.92■■□□□ 1.74
PCF11-203ENST00000530304 INSRP06213 1382 aa25.91■■□□□ 1.74
PCF11-203ENST00000530304 BLMP54132 1417 aaPredicted RBP25.9■■□□□ 1.74
PCF11-203ENST00000530304 RNF17Q9BXT8 1623 aaKnown RBP25.9■■□□□ 1.74
PCF11-203ENST00000530304 ZMYM4Q5VZL5 1548 aa25.88■■□□□ 1.73
PCF11-203ENST00000530304 TRAPPC8Q9Y2L5 1435 aa25.88■■□□□ 1.73
PCF11-203ENST00000530304 PAK3O75914 559 aaPredicted RBP25.87■■□□□ 1.73
PCF11-203ENST00000530304 ANP32AP39687 249 aaKnown RBP25.87■■□□□ 1.73
PCF11-203ENST00000530304 ABCC1P33527 1531 aa25.87■■□□□ 1.73
PCF11-203ENST00000530304 ZCCHC11Q5TAX3 1644 aaKnown RBP25.86■■□□□ 1.73
PCF11-203ENST00000530304 IPO9Q96P70 1041 aaKnown RBP25.84■■□□□ 1.73
PCF11-203ENST00000530304 MADDQ8WXG6 1647 aa25.82■■□□□ 1.72
PCF11-203ENST00000530304 WDR7Q9Y4E6 1490 aa25.82■■□□□ 1.72
PCF11-203ENST00000530304 MYT1LQ9UL68 1186 aa25.81■■□□□ 1.72
PCF11-203ENST00000530304 SPAG9O60271 1321 aaKnown RBP25.8■■□□□ 1.72
PCF11-203ENST00000530304 TCERG1O14776 1098 aaKnown RBP25.79■■□□□ 1.72
PCF11-203ENST00000530304 PLIN1O60240 522 aa25.79■■□□□ 1.72
PCF11-203ENST00000530304 ADAMTS8Q9UP79 889 aa25.79■■□□□ 1.72
PCF11-203ENST00000530304 IQGAP1P46940 1657 aa25.78■■□□□ 1.72
PCF11-203ENST00000530304 UHRF1BP1LA0JNW5 1464 aa25.78■■□□□ 1.72
PCF11-203ENST00000530304 AFAP1Q8N556 730 aa25.78■■□□□ 1.72
PCF11-203ENST00000530304 KNSTRNQ9Y448 316 aa25.78■■□□□ 1.72
PCF11-203ENST00000530304 TRPM2O94759 1503 aa25.77■■□□□ 1.72
PCF11-203ENST00000530304 RTEL1-TNFRSF6BF6WH68 1400 aa25.75■■□□□ 1.71
PCF11-203ENST00000530304 PPP2R1AP30153 589 aa25.75■■□□□ 1.71
PCF11-203ENST00000530304 ZBTB47Q9UFB7 747 aaPredicted RBP25.74■■□□□ 1.71
PCF11-203ENST00000530304 SPHKAPQ2M3C7 1700 aa25.74■■□□□ 1.71
PCF11-203ENST00000530304 CEP152O94986 1710 aa25.74■■□□□ 1.71
PCF11-203ENST00000530304 PTPRTO14522 1441 aa25.74■■□□□ 1.71
PCF11-203ENST00000530304 AMER1Q5JTC6 1135 aaPredicted RBP25.73■■□□□ 1.71
PCF11-203ENST00000530304 STAC3Q96MF2 364 aa25.73■■□□□ 1.71
PCF11-203ENST00000530304 SCAF11Q99590 1463 aaKnown RBP25.73■■□□□ 1.71
PCF11-203ENST00000530304 CDCA8Q53HL2 280 aa25.73■■□□□ 1.71
PCF11-203ENST00000530304 ZFYVE16Q7Z3T8 1539 aa25.73■■□□□ 1.71
PCF11-203ENST00000530304 SCAPERQ9BY12 1400 aa25.72■■□□□ 1.71
PCF11-203ENST00000530304 NBR1Q14596 966 aa25.71■■□□□ 1.71
PCF11-203ENST00000530304 CLTCL1P53675 1640 aa25.71■■□□□ 1.71
PCF11-203ENST00000530304 CRBNQ96SW2 442 aa25.7■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms