RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 COG6Q9Y2V7 657 aa16.01■□□□□ 0.15
USP53-209ENST00000514665 NUTM2FA1L443 756 aa16.01■□□□□ 0.15
USP53-209ENST00000514665 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.01■□□□□ 0.15
USP53-209ENST00000514665 TERF2IPQ9NYB0 399 aa16.01■□□□□ 0.15
USP53-209ENST00000514665 GAPVD1Q14C86 1478 aa16■□□□□ 0.15
USP53-209ENST00000514665 FOXD4L1Q9NU39 408 aa15.99■□□□□ 0.15
USP53-209ENST00000514665 PAK3O75914 559 aaPredicted RBP15.98■□□□□ 0.15
USP53-209ENST00000514665 CENPQQ7L2Z9 268 aaPredicted RBP15.98■□□□□ 0.15
USP53-209ENST00000514665 FANCIQ9NVI1 1328 aa15.98■□□□□ 0.15
USP53-209ENST00000514665 SYNJ1O43426 1573 aa15.98■□□□□ 0.15
USP53-209ENST00000514665 PTPRGP23470 1445 aa15.98■□□□□ 0.15
USP53-209ENST00000514665 CALD1Q05682 793 aaKnown RBP15.98■□□□□ 0.15
USP53-209ENST00000514665 MCCP23508 829 aa15.97■□□□□ 0.15
USP53-209ENST00000514665 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.97■□□□□ 0.15
USP53-209ENST00000514665 GOLGA6L4A6NEF3 574 aa15.96■□□□□ 0.15
USP53-209ENST00000514665 FAM161AQ3B820 660 aa15.96■□□□□ 0.15
USP53-209ENST00000514665 GBP4Q96PP9 640 aa15.96■□□□□ 0.15
USP53-209ENST00000514665 RRBP1Q9P2E9 1410 aaKnown RBP15.96■□□□□ 0.15
USP53-209ENST00000514665 SLC4A10Q6U841 1118 aa15.95■□□□□ 0.14
USP53-209ENST00000514665 CNTLNQ9NXG0 1405 aa15.94■□□□□ 0.14
USP53-209ENST00000514665 E9PSI1 815 aa15.94■□□□□ 0.14
USP53-209ENST00000514665 NCOA2Q15596 1464 aa15.93■□□□□ 0.14
USP53-209ENST00000514665 MSNP26038 577 aaKnown RBP15.93■□□□□ 0.14
USP53-209ENST00000514665 NBPF8Q3BBV2 869 aa15.92■□□□□ 0.14
USP53-209ENST00000514665 CCDC184Q52MB2 194 aa15.92■□□□□ 0.14
USP53-209ENST00000514665 CDCA7LQ96GN5 454 aa15.92■□□□□ 0.14
USP53-209ENST00000514665 STK31Q9BXU1 1019 aa15.91■□□□□ 0.14
USP53-209ENST00000514665 CASKIN1Q8WXD9 1431 aa15.91■□□□□ 0.14
USP53-209ENST00000514665 KIAA1211Q6ZU35 1233 aa15.91■□□□□ 0.14
USP53-209ENST00000514665 AQRO60306 1485 aaKnown RBP eCLIP15.9■□□□□ 0.14
USP53-209ENST00000514665 NCAPD3P42695 1498 aa15.9■□□□□ 0.14
USP53-209ENST00000514665 NOL8Q76FK4 1167 aaKnown RBP15.9■□□□□ 0.14
USP53-209ENST00000514665 CGNL1Q0VF96 1302 aa15.9■□□□□ 0.14
USP53-209ENST00000514665 CFAP44Q96MT7 982 aa15.89■□□□□ 0.14
USP53-209ENST00000514665 PRXQ9BXM0 1461 aa15.89■□□□□ 0.13
USP53-209ENST00000514665 MINK1Q8N4C8 1332 aaPredicted RBP15.89■□□□□ 0.13
USP53-209ENST00000514665 CFTRP13569 1480 aa15.89■□□□□ 0.13
USP53-209ENST00000514665 GOLGA6L3A6NEY3 463 aa15.89■□□□□ 0.13
USP53-209ENST00000514665 ANKRD50Q9ULJ7 1429 aa15.89■□□□□ 0.13
USP53-209ENST00000514665 TRIM6-TRIM34B2RNG4 842 aa15.89■□□□□ 0.13
USP53-209ENST00000514665 TRHP20396 242 aaPredicted RBP15.89■□□□□ 0.13
USP53-209ENST00000514665 ZKSCAN2Q63HK3 967 aa15.89■□□□□ 0.13
USP53-209ENST00000514665 LTV1Q96GA3 475 aaPredicted RBP15.89■□□□□ 0.13
USP53-209ENST00000514665 ADAMTS8Q9UP79 889 aa15.88■□□□□ 0.13
USP53-209ENST00000514665 ANKRD45Q5TZF3 282 aa15.87■□□□□ 0.13
USP53-209ENST00000514665 USP35Q9P2H5 1018 aa15.86■□□□□ 0.13
USP53-209ENST00000514665 NBPF1Q3BBV0 1214 aa15.86■□□□□ 0.13
USP53-209ENST00000514665 NGDNQ8NEJ9 315 aaKnown RBP15.86■□□□□ 0.13
USP53-209ENST00000514665 ERICH3Q5RHP9 1530 aa15.85■□□□□ 0.13
USP53-209ENST00000514665 VGFO15240 615 aaPredicted RBP15.85■□□□□ 0.13
USP53-209ENST00000514665 FOXD4L5Q5VV16 416 aaPredicted RBP15.85■□□□□ 0.13
USP53-209ENST00000514665 FOXD4L4Q8WXT5 416 aaPredicted RBP15.85■□□□□ 0.13
USP53-209ENST00000514665 HMMRO75330 724 aa15.84■□□□□ 0.13
USP53-209ENST00000514665 PRKCSHP14314 528 aaPredicted RBP15.84■□□□□ 0.13
USP53-209ENST00000514665 EVC2Q86UK5 1308 aa15.84■□□□□ 0.13
USP53-209ENST00000514665 GSE1Q14687 1217 aa15.84■□□□□ 0.13
USP53-209ENST00000514665 CUX1P39880 1505 aa15.83■□□□□ 0.13
USP53-209ENST00000514665 AMPHP49418 695 aa15.83■□□□□ 0.13
USP53-209ENST00000514665 ZNF330Q9Y3S2 320 aaPredicted RBP15.83■□□□□ 0.13
USP53-209ENST00000514665 PANK1Q8TE04 598 aa15.82■□□□□ 0.12
USP53-209ENST00000514665 FYCO1Q9BQS8 1478 aa15.82■□□□□ 0.12
USP53-209ENST00000514665 LMOD3Q0VAK6 560 aa15.82■□□□□ 0.12
USP53-209ENST00000514665 ARID3AQ99856 593 aa15.82■□□□□ 0.12
USP53-209ENST00000514665 CDK11BP21127 795 aaKnown RBP15.82■□□□□ 0.12
USP53-209ENST00000514665 DRC7Q8IY82 874 aa15.82■□□□□ 0.12
USP53-209ENST00000514665 AFAP1Q8N556 730 aa15.81■□□□□ 0.12
USP53-209ENST00000514665 TMEM132EQ6IEE7 984 aa15.81■□□□□ 0.12
USP53-209ENST00000514665 CSB-PGBD3P0DP91 1061 aa15.8■□□□□ 0.12
USP53-209ENST00000514665 AKNAQ7Z591 1439 aa15.8■□□□□ 0.12
USP53-209ENST00000514665 WDR97A6NE52 1622 aa15.8■□□□□ 0.12
USP53-209ENST00000514665 RIPK4P57078 832 aa15.79■□□□□ 0.12
USP53-209ENST00000514665 DZIP1LQ8IYY4 767 aaKnown RBP15.79■□□□□ 0.12
USP53-209ENST00000514665 CFAP70Q5T0N1 1121 aa15.79■□□□□ 0.12
USP53-209ENST00000514665 BRD4O60885 1362 aaPredicted RBP15.79■□□□□ 0.12
USP53-209ENST00000514665 PNISRQ8TF01 805 aaKnown RBP15.78■□□□□ 0.12
USP53-209ENST00000514665 NPHP1O15259 732 aa15.78■□□□□ 0.12
USP53-209ENST00000514665 GGNBP2Q9H3C7 697 aa15.78■□□□□ 0.12
USP53-209ENST00000514665 CHAF1AQ13111 956 aaPredicted RBP15.78■□□□□ 0.12
USP53-209ENST00000514665 FOXD4L6Q3SYB3 417 aaPredicted RBP15.78■□□□□ 0.12
USP53-209ENST00000514665 FOXD4L3Q6VB84 417 aaPredicted RBP15.78■□□□□ 0.12
USP53-209ENST00000514665 TULP1O00294 542 aaPredicted RBP15.77■□□□□ 0.12
USP53-209ENST00000514665 DIAPH1O60610 1272 aaKnown RBP15.77■□□□□ 0.12
USP53-209ENST00000514665 RUNDC1Q96C34 613 aa15.77■□□□□ 0.11
USP53-209ENST00000514665 COG3Q96JB2 828 aa15.76■□□□□ 0.11
USP53-209ENST00000514665 NRDCO43847 1150 aa15.76■□□□□ 0.11
USP53-209ENST00000514665 PTMSP20962 102 aa15.76■□□□□ 0.11
USP53-209ENST00000514665 HFM1A2PYH4 1435 aa15.76■□□□□ 0.11
USP53-209ENST00000514665 LNPKQ9C0E8 428 aa15.76■□□□□ 0.11
USP53-209ENST00000514665 DDX19BQ9UMR2 479 aa15.76■□□□□ 0.11
USP53-209ENST00000514665 NESP48681 1621 aa15.76■□□□□ 0.11
USP53-209ENST00000514665 ST18O60284 1047 aa15.75■□□□□ 0.11
USP53-209ENST00000514665 RILPL2Q969X0 211 aa15.75■□□□□ 0.11
USP53-209ENST00000514665 CHMP3Q9Y3E7 222 aa15.75■□□□□ 0.11
USP53-209ENST00000514665 GOLGA6L6A8MZA4 724 aa15.75■□□□□ 0.11
USP53-209ENST00000514665 MTHFSP49914 203 aa15.75■□□□□ 0.11
USP53-209ENST00000514665 DDX49Q9Y6V7 483 aaKnown RBP15.75■□□□□ 0.11
USP53-209ENST00000514665 MIA2Q96PC5 1412 aa15.74■□□□□ 0.11
USP53-209ENST00000514665 KIAA2012Q0VF49 1180 aa15.74■□□□□ 0.11
USP53-209ENST00000514665 HMOX1P09601 288 aa15.74■□□□□ 0.11
USP53-209ENST00000514665 PPP2R1AP30153 589 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms