RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 GTF3C3Q9Y5Q9 886 aa11.1□□□□□ -0.63
VCAN-208ENST00000512590 SF3A1Q15459 793 aaKnown RBP11.1□□□□□ -0.63
VCAN-208ENST00000512590 TTLL12Q14166 644 aaPredicted RBP11.09□□□□□ -0.63
VCAN-208ENST00000512590 RGS3P49796 1198 aa11.09□□□□□ -0.63
VCAN-208ENST00000512590 TRIM6-TRIM34B2RNG4 842 aa11.09□□□□□ -0.63
VCAN-208ENST00000512590 RSF1Q96T23 1441 aaPredicted RBP11.08□□□□□ -0.64
VCAN-208ENST00000512590 NEBLO76041 1014 aa11.08□□□□□ -0.64
VCAN-208ENST00000512590 CA8P35219 290 aa11.08□□□□□ -0.64
VCAN-208ENST00000512590 GRM1Q13255 1194 aa11.08□□□□□ -0.64
VCAN-208ENST00000512590 LRRFIP1Q32MZ4 808 aaKnown RBP11.07□□□□□ -0.64
VCAN-208ENST00000512590 KIF3AQ9Y496 699 aa11.07□□□□□ -0.64
VCAN-208ENST00000512590 IPO8O15397 1037 aaKnown RBP11.07□□□□□ -0.64
VCAN-208ENST00000512590 TMF1P82094 1093 aa11.07□□□□□ -0.64
VCAN-208ENST00000512590 RDXP35241 583 aaKnown RBP11.07□□□□□ -0.64
VCAN-208ENST00000512590 SLC4A10Q6U841 1118 aa11.07□□□□□ -0.64
VCAN-208ENST00000512590 APPP05067 770 aa11.06□□□□□ -0.64
VCAN-208ENST00000512590 NUTM2DQ5VT03 806 aaPredicted RBP11.06□□□□□ -0.64
VCAN-208ENST00000512590 IRX6P78412 446 aaPredicted RBP11.06□□□□□ -0.64
VCAN-208ENST00000512590 FYB1O15117 783 aa11.06□□□□□ -0.64
VCAN-208ENST00000512590 CRBNQ96SW2 442 aa11.05□□□□□ -0.64
VCAN-208ENST00000512590 NAP1L5Q96NT1 182 aaPredicted RBP11.05□□□□□ -0.64
VCAN-208ENST00000512590 TPM1P09493 284 aa11.05□□□□□ -0.64
VCAN-208ENST00000512590 NOP2P46087 812 aaKnown RBP11.05□□□□□ -0.64
VCAN-208ENST00000512590 CHMP4BP1P59074 171 aa11.04□□□□□ -0.64
VCAN-208ENST00000512590 PSME1Q06323 249 aa11.04□□□□□ -0.64
VCAN-208ENST00000512590 RBM5P52756 815 aaKnown RBP eCLIP11.04□□□□□ -0.64
VCAN-208ENST00000512590 TRIM29Q14134 588 aa11.04□□□□□ -0.64
VCAN-208ENST00000512590 CCDC27Q2M243 656 aa11.04□□□□□ -0.64
VCAN-208ENST00000512590 CCDC70Q6NSX1 233 aa11.04□□□□□ -0.64
VCAN-208ENST00000512590 ERICH2A1L162 156 aa11.03□□□□□ -0.64
VCAN-208ENST00000512590 HSP90AB2PQ58FF8 381 aa11.03□□□□□ -0.64
VCAN-208ENST00000512590 STAC3Q96MF2 364 aa11.03□□□□□ -0.64
VCAN-208ENST00000512590 NEXNQ0ZGT2 675 aa11.03□□□□□ -0.64
VCAN-208ENST00000512590 HMMRO75330 724 aa11.02□□□□□ -0.64
VCAN-208ENST00000512590 TRIM21P19474 475 aaKnown RBP11.02□□□□□ -0.65
VCAN-208ENST00000512590 MSNP26038 577 aaKnown RBP11.02□□□□□ -0.65
VCAN-208ENST00000512590 MTMR7Q9Y216 660 aa11.02□□□□□ -0.65
VCAN-208ENST00000512590 HMGB2P26583 209 aaKnown RBP11.01□□□□□ -0.65
VCAN-208ENST00000512590 CSPP1Q1MSJ5 1256 aa11.01□□□□□ -0.65
VCAN-208ENST00000512590 CHMP4CQ96CF2 233 aa11.01□□□□□ -0.65
VCAN-208ENST00000512590 CYB5RLQ6IPT4 315 aa11.01□□□□□ -0.65
VCAN-208ENST00000512590 CPLX2Q6PUV4 134 aaKnown RBP11.01□□□□□ -0.65
VCAN-208ENST00000512590 H3BQV1 296 aa11□□□□□ -0.65
VCAN-208ENST00000512590 TEFQ10587 303 aa11□□□□□ -0.65
VCAN-208ENST00000512590 IFFO2Q5TF58 517 aa11□□□□□ -0.65
VCAN-208ENST00000512590 SUPT16HQ9Y5B9 1047 aaKnown RBP11□□□□□ -0.65
VCAN-208ENST00000512590 EPS15P42566 896 aa11□□□□□ -0.65
VCAN-208ENST00000512590 DRC1Q96MC2 740 aa11□□□□□ -0.65
VCAN-208ENST00000512590 CBX1P83916 185 aa10.99□□□□□ -0.65
VCAN-208ENST00000512590 SETQ01105 290 aaPredicted RBP10.99□□□□□ -0.65
VCAN-208ENST00000512590 HIRIP3Q9BW71 556 aaPredicted RBP10.99□□□□□ -0.65
VCAN-208ENST00000512590 U2AF1L5P0DN76 240 aaPredicted RBP10.99□□□□□ -0.65
VCAN-208ENST00000512590 U2AF1Q01081 240 aaKnown RBP eCLIP10.99□□□□□ -0.65
VCAN-208ENST00000512590 NFXL1Q6ZNB6 911 aa10.99□□□□□ -0.65
VCAN-208ENST00000512590 TERF2IPQ9NYB0 399 aa10.99□□□□□ -0.65
VCAN-208ENST00000512590 ANKRD20A12PQ8NF67 263 aa10.99□□□□□ -0.65
VCAN-208ENST00000512590 IPO7O95373 1038 aaKnown RBP10.98□□□□□ -0.65
VCAN-208ENST00000512590 FAM184AQ8NB25 1140 aa10.98□□□□□ -0.65
VCAN-208ENST00000512590 IL27Q8NEV9 243 aa10.98□□□□□ -0.65
VCAN-208ENST00000512590 SCLT1Q96NL6 688 aa10.98□□□□□ -0.65
VCAN-208ENST00000512590 BEGAINQ9BUH8 593 aa10.98□□□□□ -0.65
VCAN-208ENST00000512590 KIF16BQ96L93 1317 aa10.98□□□□□ -0.65
VCAN-208ENST00000512590 HSP90AB4PQ58FF6 505 aa10.97□□□□□ -0.65
VCAN-208ENST00000512590 ITPRIPQ8IWB1 547 aa10.97□□□□□ -0.65
VCAN-208ENST00000512590 RSPH4AQ5TD94 716 aa10.97□□□□□ -0.65
VCAN-208ENST00000512590 SYAP1Q96A49 352 aaPredicted RBP10.97□□□□□ -0.65
VCAN-208ENST00000512590 DNAI2Q9GZS0 605 aa10.97□□□□□ -0.65
VCAN-208ENST00000512590 FAM177BA6PVY3 158 aa10.97□□□□□ -0.65
VCAN-208ENST00000512590 ATP2B2Q01814 1243 aa10.97□□□□□ -0.65
VCAN-208ENST00000512590 CALRP27797 417 aaKnown RBP10.97□□□□□ -0.65
VCAN-208ENST00000512590 TNNT3P45378 269 aaPredicted RBP10.97□□□□□ -0.65
VCAN-208ENST00000512590 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.97□□□□□ -0.65
VCAN-208ENST00000512590 CLIP1P30622 1438 aa10.96□□□□□ -0.65
VCAN-208ENST00000512590 WASHC2CQ9Y4E1 1318 aa10.96□□□□□ -0.65
VCAN-208ENST00000512590 LMOD3Q0VAK6 560 aa10.96□□□□□ -0.65
VCAN-208ENST00000512590 PDE3BQ13370 1112 aa10.96□□□□□ -0.65
VCAN-208ENST00000512590 NAP1L1P55209 391 aaKnown RBP10.96□□□□□ -0.66
VCAN-208ENST00000512590 TRDNQ13061 729 aa10.96□□□□□ -0.66
VCAN-208ENST00000512590 MATR3P43243 847 aaKnown RBP eCLIP10.96□□□□□ -0.66
VCAN-208ENST00000512590 NOL8Q76FK4 1167 aaKnown RBP10.95□□□□□ -0.66
VCAN-208ENST00000512590 HOMER1Q86YM7 354 aa10.95□□□□□ -0.66
VCAN-208ENST00000512590 DESP17661 470 aa10.95□□□□□ -0.66
VCAN-208ENST00000512590 DCAF11Q8TEB1 546 aa10.95□□□□□ -0.66
VCAN-208ENST00000512590 ZMYND15Q9H091 742 aa10.95□□□□□ -0.66
VCAN-208ENST00000512590 CCNB3Q8WWL7 1395 aa10.94□□□□□ -0.66
VCAN-208ENST00000512590 WDR78Q5VTH9 848 aa10.94□□□□□ -0.66
VCAN-208ENST00000512590 SYCP1Q15431 976 aa10.94□□□□□ -0.66
VCAN-208ENST00000512590 CLEC11AQ9Y240 323 aa10.94□□□□□ -0.66
VCAN-208ENST00000512590 GRIPAP1Q4V328 841 aa10.94□□□□□ -0.66
VCAN-208ENST00000512590 SEPT11Q9NVA2 429 aaKnown RBP10.94□□□□□ -0.66
VCAN-208ENST00000512590 RAPGEF4Q8WZA2 1011 aa10.93□□□□□ -0.66
VCAN-208ENST00000512590 CCAR2Q8N163 923 aaKnown RBP10.93□□□□□ -0.66
VCAN-208ENST00000512590 SART3Q15020 963 aaKnown RBP10.93□□□□□ -0.66
VCAN-208ENST00000512590 IPO9Q96P70 1041 aaKnown RBP10.93□□□□□ -0.66
VCAN-208ENST00000512590 ZRSR2Q15696 482 aaKnown RBP10.93□□□□□ -0.66
VCAN-208ENST00000512590 VTI1AQ96AJ9 217 aa10.93□□□□□ -0.66
VCAN-208ENST00000512590 PDCL3Q9H2J4 239 aa10.93□□□□□ -0.66
VCAN-208ENST00000512590 STRN4Q9NRL3 753 aa10.93□□□□□ -0.66
VCAN-208ENST00000512590 TMOD2Q9NZR1 351 aa10.92□□□□□ -0.66
VCAN-208ENST00000512590 OFD1O75665 1012 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms