RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-208ENST00000498325 LARP6Q9BRS8 491 aaKnown RBP10.32□□□□□ -0.76
HMGXB4-208ENST00000498325 RABGEF1Q9UJ41 708 aa10.32□□□□□ -0.76
HMGXB4-208ENST00000498325 EIF4G1Q04637 1599 aaKnown RBP10.31□□□□□ -0.76
HMGXB4-208ENST00000498325 DDX27Q96GQ7 796 aaKnown RBP10.31□□□□□ -0.76
HMGXB4-208ENST00000498325 CUX2O14529 1486 aa10.3□□□□□ -0.76
HMGXB4-208ENST00000498325 PROX2Q3B8N5 592 aa10.29□□□□□ -0.76
HMGXB4-208ENST00000498325 ITGBL1O95965 494 aaPredicted RBP10.28□□□□□ -0.76
HMGXB4-208ENST00000498325 PCDHGA10Q9Y5H3 936 aa10.28□□□□□ -0.76
HMGXB4-208ENST00000498325 COL9A1P20849 921 aa10.26□□□□□ -0.77
HMGXB4-208ENST00000498325 BCAMP50895 628 aa10.26□□□□□ -0.77
HMGXB4-208ENST00000498325 SOWAHBA6NEL2 793 aa10.24□□□□□ -0.77
HMGXB4-208ENST00000498325 MFSD10Q14728 455 aa10.24□□□□□ -0.77
HMGXB4-208ENST00000498325 TYW1BQ6NUM6 668 aa10.24□□□□□ -0.77
HMGXB4-208ENST00000498325 NYAP1Q6ZVC0 841 aa10.24□□□□□ -0.77
HMGXB4-208ENST00000498325 LAPTM4BQ86VI4 370 aa10.24□□□□□ -0.77
HMGXB4-208ENST00000498325 FBXW7Q969H0 707 aa10.24□□□□□ -0.77
HMGXB4-208ENST00000498325 EMILIN3Q9NT22 766 aa10.24□□□□□ -0.77
HMGXB4-208ENST00000498325 SHROOM4Q9ULL8 1493 aa10.23□□□□□ -0.77
HMGXB4-208ENST00000498325 GTPBP6O43824 516 aaPredicted RBP10.22□□□□□ -0.77
HMGXB4-208ENST00000498325 Q6ZNB5 142 aa10.22□□□□□ -0.77
HMGXB4-208ENST00000498325 KIAA1468Q9P260 1216 aa10.22□□□□□ -0.77
HMGXB4-208ENST00000498325 PHF14O94880 888 aa10.21□□□□□ -0.77
HMGXB4-208ENST00000498325 ZFRQ96KR1 1074 aaKnown RBP10.21□□□□□ -0.77
HMGXB4-208ENST00000498325 KCNC4Q03721 635 aa10.2□□□□□ -0.78
HMGXB4-208ENST00000498325 WBP1LQ9NX94 342 aa10.19□□□□□ -0.78
HMGXB4-208ENST00000498325 ONECUT3O60422 494 aaPredicted RBP10.17□□□□□ -0.78
HMGXB4-208ENST00000498325 SEPT9Q9UHD8 586 aaPredicted RBP10.17□□□□□ -0.78
HMGXB4-208ENST00000498325 MYO15BQ96JP2 1530 aa10.16□□□□□ -0.78
HMGXB4-208ENST00000498325 C6orf132Q5T0Z8 1188 aa10.15□□□□□ -0.78
HMGXB4-208ENST00000498325 EPAS1Q99814 870 aa10.15□□□□□ -0.78
HMGXB4-208ENST00000498325 FAM98CQ17RN3 349 aaKnown RBP10.13□□□□□ -0.79
HMGXB4-208ENST00000498325 TRIM6-TRIM34B2RNG4 842 aa10.12□□□□□ -0.79
HMGXB4-208ENST00000498325 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.12□□□□□ -0.79
HMGXB4-208ENST00000498325 TSR3Q9UJK0 312 aaKnown RBP10.12□□□□□ -0.79
HMGXB4-208ENST00000498325 HPS5Q9UPZ3 1129 aa10.12□□□□□ -0.79
HMGXB4-208ENST00000498325 LRCH3Q96II8 777 aa10.11□□□□□ -0.79
HMGXB4-208ENST00000498325 ERCC6Q03468 1493 aa10.1□□□□□ -0.79
HMGXB4-208ENST00000498325 LAPTM4AQ15012 233 aa10.1□□□□□ -0.79
HMGXB4-208ENST00000498325 CADPS2Q86UW7 1296 aa10.09□□□□□ -0.79
HMGXB4-208ENST00000498325 RBM33Q96EV2 1170 aaKnown RBP10.09□□□□□ -0.79
HMGXB4-208ENST00000498325 DPYSL4O14531 572 aa10.07□□□□□ -0.8
HMGXB4-208ENST00000498325 CAMK2BQ13554 666 aa10.06□□□□□ -0.8
HMGXB4-208ENST00000498325 GFRA3O60609 400 aa10.05□□□□□ -0.8
HMGXB4-208ENST00000498325 PACS2Q86VP3 889 aa10.04□□□□□ -0.8
HMGXB4-208ENST00000498325 DDX12PQ92771 950 aa10.04□□□□□ -0.8
HMGXB4-208ENST00000498325 PPP4CP60510 307 aa10.03□□□□□ -0.8
HMGXB4-208ENST00000498325 TRAF7Q6Q0C0 670 aa10.02□□□□□ -0.81
HMGXB4-208ENST00000498325 SCRIBQ14160 1630 aa10.02□□□□□ -0.81
HMGXB4-208ENST00000498325 TSKSQ9UJT2 592 aa10.01□□□□□ -0.81
HMGXB4-208ENST00000498325 LCE2BO14633 110 aa10□□□□□ -0.81
HMGXB4-208ENST00000498325 MAP3K7O43318 606 aa9.99□□□□□ -0.81
HMGXB4-208ENST00000498325 EN1Q05925 392 aaPredicted RBP9.98□□□□□ -0.81
HMGXB4-208ENST00000498325 NBR1Q14596 966 aa9.98□□□□□ -0.81
HMGXB4-208ENST00000498325 TSR1Q2NL82 804 aaKnown RBP9.98□□□□□ -0.81
HMGXB4-208ENST00000498325 TJAP1Q5JTD0 557 aa9.98□□□□□ -0.81
HMGXB4-208ENST00000498325 PRKD2Q9BZL6 878 aa9.98□□□□□ -0.81
HMGXB4-208ENST00000498325 SAMD7Q7Z3H4 446 aa9.96□□□□□ -0.82
HMGXB4-208ENST00000498325 SMAPO00193 183 aa9.95□□□□□ -0.82
HMGXB4-208ENST00000498325 MTRQ99707 1265 aa9.95□□□□□ -0.82
HMGXB4-208ENST00000498325 NRG2O14511 850 aaPredicted RBP9.94□□□□□ -0.82
HMGXB4-208ENST00000498325 IL21Q9HBE4 155 aa9.94□□□□□ -0.82
HMGXB4-208ENST00000498325 PPP1R18Q6NYC8 613 aa9.93□□□□□ -0.82
HMGXB4-208ENST00000498325 CDCA7LQ96GN5 454 aa9.93□□□□□ -0.82
HMGXB4-208ENST00000498325 V9GY48 417 aaPredicted RBP9.93□□□□□ -0.82
HMGXB4-208ENST00000498325 PRSS12P56730 875 aa9.92□□□□□ -0.82
HMGXB4-208ENST00000498325 PDIA6Q15084 440 aa9.92□□□□□ -0.82
HMGXB4-208ENST00000498325 FAM198AQ9UFP1 575 aa9.9□□□□□ -0.82
HMGXB4-208ENST00000498325 NESP48681 1621 aa9.89□□□□□ -0.83
HMGXB4-208ENST00000498325 SPDYE16A6NNV3 312 aaPredicted RBP9.89□□□□□ -0.83
HMGXB4-208ENST00000498325 NBPF26B4DH59 902 aa9.89□□□□□ -0.83
HMGXB4-208ENST00000498325 CERKQ8TCT0 537 aa9.89□□□□□ -0.83
HMGXB4-208ENST00000498325 TATDN2Q93075 761 aa9.89□□□□□ -0.83
HMGXB4-208ENST00000498325 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.89□□□□□ -0.83
HMGXB4-208ENST00000498325 ZNF516Q92618 1163 aa9.88□□□□□ -0.83
HMGXB4-208ENST00000498325 PNMA3Q9UL41 463 aa9.88□□□□□ -0.83
HMGXB4-208ENST00000498325 RNF40O75150 1001 aa9.87□□□□□ -0.83
HMGXB4-208ENST00000498325 HDGFP51858 240 aaKnown RBP9.87□□□□□ -0.83
HMGXB4-208ENST00000498325 C3orf80F5H4A9 247 aa9.86□□□□□ -0.83
HMGXB4-208ENST00000498325 THOC2Q8NI27 1593 aaKnown RBP9.86□□□□□ -0.83
HMGXB4-208ENST00000498325 ZCCHC6Q5VYS8 1495 aaKnown RBP9.85□□□□□ -0.83
HMGXB4-208ENST00000498325 PDZRN3Q9UPQ7 1066 aa9.85□□□□□ -0.83
HMGXB4-208ENST00000498325 APLP1P51693 650 aa9.84□□□□□ -0.83
HMGXB4-208ENST00000498325 ZNF787Q6DD87 383 aa9.84□□□□□ -0.83
HMGXB4-208ENST00000498325 PRIM1P49642 420 aaKnown RBP9.83□□□□□ -0.84
HMGXB4-208ENST00000498325 GRXCR2A6NFK2 248 aa9.82□□□□□ -0.84
HMGXB4-208ENST00000498325 GGCXP38435 758 aa9.82□□□□□ -0.84
HMGXB4-208ENST00000498325 NUDT18Q6ZVK8 323 aa9.82□□□□□ -0.84
HMGXB4-208ENST00000498325 NKX2-3Q8TAU0 364 aa9.81□□□□□ -0.84
HMGXB4-208ENST00000498325 NECTIN2Q92692 538 aa9.8□□□□□ -0.84
HMGXB4-208ENST00000498325 DCAF1Q9Y4B6 1507 aa9.79□□□□□ -0.84
HMGXB4-208ENST00000498325 RBM27Q9P2N5 1060 aaKnown RBP9.79□□□□□ -0.84
HMGXB4-208ENST00000498325 NCAPD3P42695 1498 aa9.79□□□□□ -0.84
HMGXB4-208ENST00000498325 COPS2P61201 443 aa9.78□□□□□ -0.84
HMGXB4-208ENST00000498325 CDHR5Q9HBB8 845 aa9.78□□□□□ -0.84
HMGXB4-208ENST00000498325 E2F4Q16254 413 aa9.77□□□□□ -0.85
HMGXB4-208ENST00000498325 SLF2Q8IX21 1173 aa9.76□□□□□ -0.85
HMGXB4-208ENST00000498325 TMUB1Q9BVT8 246 aa9.76□□□□□ -0.85
HMGXB4-208ENST00000498325 OSBPP22059 807 aa9.75□□□□□ -0.85
HMGXB4-208ENST00000498325 SWT1Q5T5J6 900 aaKnown RBP9.75□□□□□ -0.85
HMGXB4-208ENST00000498325 SMARCA2P51531 1590 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms