RNA–Protein interactions for RNA: ENST00000498020.1

HLA-DMB-262, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 4,569 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-262ENST00000498020 USP47Q96K76 1375 aa10.73□□□□□ -0.69
HLA-DMB-262ENST00000498020 ROCK2O75116 1388 aaKnown RBP10.73□□□□□ -0.69
HLA-DMB-262ENST00000498020 ARHGAP5Q13017 1502 aa10.73□□□□□ -0.69
HLA-DMB-262ENST00000498020 NPHP1O15259 732 aa10.72□□□□□ -0.69
HLA-DMB-262ENST00000498020 PPM1GO15355 546 aaPredicted RBP10.72□□□□□ -0.69
HLA-DMB-262ENST00000498020 PRKRIP1Q9H875 184 aaPredicted RBP10.72□□□□□ -0.69
HLA-DMB-262ENST00000498020 CHD1O14646 1710 aa10.72□□□□□ -0.69
HLA-DMB-262ENST00000498020 ZBTB47Q9UFB7 747 aaPredicted RBP10.72□□□□□ -0.69
HLA-DMB-262ENST00000498020 ITSN2Q9NZM3 1697 aa10.72□□□□□ -0.69
HLA-DMB-262ENST00000498020 CNTLNQ9NXG0 1405 aa10.71□□□□□ -0.69
HLA-DMB-262ENST00000498020 CCDC141Q6ZP82 1450 aa10.71□□□□□ -0.69
HLA-DMB-262ENST00000498020 DNMT1P26358 1616 aaKnown RBP10.71□□□□□ -0.69
HLA-DMB-262ENST00000498020 KIF7Q2M1P5 1343 aa10.71□□□□□ -0.7
HLA-DMB-262ENST00000498020 CDCA8Q53HL2 280 aa10.7□□□□□ -0.7
HLA-DMB-262ENST00000498020 TMF1P82094 1093 aa10.68□□□□□ -0.7
HLA-DMB-262ENST00000498020 ST20-MTHFSA0A0A6YYL1 179 aa10.68□□□□□ -0.7
HLA-DMB-262ENST00000498020 RAPGEF3O95398 923 aa10.68□□□□□ -0.7
HLA-DMB-262ENST00000498020 ADGRL2O95490 1459 aa10.67□□□□□ -0.7
HLA-DMB-262ENST00000498020 GCC2Q8IWJ2 1684 aa10.67□□□□□ -0.7
HLA-DMB-262ENST00000498020 SHANK2Q9UPX8 1470 aa10.66□□□□□ -0.7
HLA-DMB-262ENST00000498020 RALBP1Q15311 655 aa10.66□□□□□ -0.7
HLA-DMB-262ENST00000498020 CSB-PGBD3P0DP91 1061 aa10.65□□□□□ -0.7
HLA-DMB-262ENST00000498020 ABCA8O94911 1581 aa10.65□□□□□ -0.7
HLA-DMB-262ENST00000498020 KLHL34Q8N239 644 aa10.64□□□□□ -0.71
HLA-DMB-262ENST00000498020 STAC3Q96MF2 364 aa10.64□□□□□ -0.71
HLA-DMB-262ENST00000498020 KNSTRNQ9Y448 316 aa10.63□□□□□ -0.71
HLA-DMB-262ENST00000498020 PZPP20742 1482 aa10.63□□□□□ -0.71
HLA-DMB-262ENST00000498020 IRX6P78412 446 aaPredicted RBP10.63□□□□□ -0.71
HLA-DMB-262ENST00000498020 ERICH6BQ5W0A0 696 aa10.63□□□□□ -0.71
HLA-DMB-262ENST00000498020 AFAP1Q8N556 730 aa10.63□□□□□ -0.71
HLA-DMB-262ENST00000498020 ABCC10Q5T3U5 1492 aa10.62□□□□□ -0.71
HLA-DMB-262ENST00000498020 NUTM2BA6NNL0 878 aaPredicted RBP10.62□□□□□ -0.71
HLA-DMB-262ENST00000498020 NUTM2EB1AL46 878 aaPredicted RBP10.62□□□□□ -0.71
HLA-DMB-262ENST00000498020 NUTM2AQ8IVF1 878 aaPredicted RBP10.62□□□□□ -0.71
HLA-DMB-262ENST00000498020 LRRIQ1Q96JM4 1722 aa10.62□□□□□ -0.71
HLA-DMB-262ENST00000498020 KTN1Q86UP2 1357 aaKnown RBP10.62□□□□□ -0.71
HLA-DMB-262ENST00000498020 C11orf95C9JLR9 678 aaPredicted RBP10.62□□□□□ -0.71
HLA-DMB-262ENST00000498020 DCAF8L1A6NGE4 600 aa10.61□□□□□ -0.71
HLA-DMB-262ENST00000498020 CANXP27824 592 aaKnown RBP10.6□□□□□ -0.71
HLA-DMB-262ENST00000498020 WDR43Q15061 677 aaKnown RBP eCLIP10.6□□□□□ -0.71
HLA-DMB-262ENST00000498020 ZBED9Q6R2W3 1325 aa10.6□□□□□ -0.71
HLA-DMB-262ENST00000498020 PLCH2O75038 1416 aa10.6□□□□□ -0.71
HLA-DMB-262ENST00000498020 PPP4R2Q9NY27 417 aa10.6□□□□□ -0.71
HLA-DMB-262ENST00000498020 SALL2Q9Y467 1007 aaPredicted RBP10.6□□□□□ -0.71
HLA-DMB-262ENST00000498020 ABCC2Q92887 1545 aa10.59□□□□□ -0.71
HLA-DMB-262ENST00000498020 KDM6BO15054 1643 aa10.59□□□□□ -0.71
HLA-DMB-262ENST00000498020 SRPK2P78362 688 aaKnown RBP10.59□□□□□ -0.71
HLA-DMB-262ENST00000498020 NLRP13Q86W25 1043 aa10.59□□□□□ -0.71
HLA-DMB-262ENST00000498020 MYBBP1AQ9BQG0 1328 aaKnown RBP10.58□□□□□ -0.72
HLA-DMB-262ENST00000498020 MSH5O43196 834 aa10.58□□□□□ -0.72
HLA-DMB-262ENST00000498020 CC2D1BQ5T0F9 858 aaKnown RBP10.58□□□□□ -0.72
HLA-DMB-262ENST00000498020 TEX14Q8IWB6 1497 aa10.58□□□□□ -0.72
HLA-DMB-262ENST00000498020 ATF3P18847 181 aa10.57□□□□□ -0.72
HLA-DMB-262ENST00000498020 CLASP1Q7Z460 1538 aa10.57□□□□□ -0.72
HLA-DMB-262ENST00000498020 EIF3AQ14152 1382 aaKnown RBP10.57□□□□□ -0.72
HLA-DMB-262ENST00000498020 HSPA2P54652 639 aa10.56□□□□□ -0.72
HLA-DMB-262ENST00000498020 SYCP2Q9BX26 1530 aa10.56□□□□□ -0.72
HLA-DMB-262ENST00000498020 CEBPAP49715 358 aaPredicted RBP10.56□□□□□ -0.72
HLA-DMB-262ENST00000498020 PROSER2Q86WR7 435 aaPredicted RBP10.56□□□□□ -0.72
HLA-DMB-262ENST00000498020 NGDNQ8NEJ9 315 aaKnown RBP10.56□□□□□ -0.72
HLA-DMB-262ENST00000498020 CCDC136Q96JN2 1154 aa10.56□□□□□ -0.72
HLA-DMB-262ENST00000498020 ADCY10Q96PN6 1610 aa10.56□□□□□ -0.72
HLA-DMB-262ENST00000498020 MBD5Q9P267 1494 aa10.56□□□□□ -0.72
HLA-DMB-262ENST00000498020 UBAP1LF5GYI3 381 aa10.55□□□□□ -0.72
HLA-DMB-262ENST00000498020 ARHGEF5Q12774 1597 aa10.55□□□□□ -0.72
HLA-DMB-262ENST00000498020 NBPF1Q3BBV0 1214 aa10.55□□□□□ -0.72
HLA-DMB-262ENST00000498020 ADGBQ8N7X0 1667 aa10.55□□□□□ -0.72
HLA-DMB-262ENST00000498020 SCAPERQ9BY12 1400 aa10.55□□□□□ -0.72
HLA-DMB-262ENST00000498020 NUDCQ9Y266 331 aa10.54□□□□□ -0.72
HLA-DMB-262ENST00000498020 SF3B2Q13435 895 aaKnown RBP10.54□□□□□ -0.72
HLA-DMB-262ENST00000498020 RALGAPBQ86X10 1494 aa10.54□□□□□ -0.72
HLA-DMB-262ENST00000498020 DENND4BO75064 1496 aaPredicted RBP10.54□□□□□ -0.72
HLA-DMB-262ENST00000498020 DUOX2Q9NRD8 1548 aa10.54□□□□□ -0.72
HLA-DMB-262ENST00000498020 TNNT2P45379 298 aaPredicted RBP10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 CCDC184Q52MB2 194 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 PANK3Q9H999 370 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 ERBINQ96RT1 1412 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 FAM135AQ9P2D6 1515 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 ARHGEF12Q9NZN5 1544 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 EVA1CP58658 441 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 UHRF1BP1Q6BDS2 1440 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 RIMBP3CA6NJZ7 1639 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 RIMBP3BA6NNM3 1639 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 RIMBP3Q9UFD9 1639 aa10.53□□□□□ -0.72
HLA-DMB-262ENST00000498020 ZNF330Q9Y3S2 320 aaPredicted RBP10.52□□□□□ -0.73
HLA-DMB-262ENST00000498020 BRD4O60885 1362 aaPredicted RBP10.52□□□□□ -0.73
HLA-DMB-262ENST00000498020 SENP3-EIF4A1A0A087X0R7 540 aa10.52□□□□□ -0.73
HLA-DMB-262ENST00000498020 TXNDC2Q86VQ3 553 aa10.51□□□□□ -0.73
HLA-DMB-262ENST00000498020 ERCC6L2Q5T890 1561 aa10.51□□□□□ -0.73
HLA-DMB-262ENST00000498020 PDE3BQ13370 1112 aa10.51□□□□□ -0.73
HLA-DMB-262ENST00000498020 TSHZ2Q9NRE2 1034 aa10.51□□□□□ -0.73
HLA-DMB-262ENST00000498020 USP35Q9P2H5 1018 aa10.51□□□□□ -0.73
HLA-DMB-262ENST00000498020 UHRF1BP1LA0JNW5 1464 aa10.51□□□□□ -0.73
HLA-DMB-262ENST00000498020 PPP1R1BQ9UD71 204 aaPredicted RBP10.5□□□□□ -0.73
HLA-DMB-262ENST00000498020 SPATA31E1Q6ZUB1 1445 aa10.5□□□□□ -0.73
HLA-DMB-262ENST00000498020 TRAPPC8Q9Y2L5 1435 aa10.5□□□□□ -0.73
HLA-DMB-262ENST00000498020 FANCAO15360 1455 aa10.5□□□□□ -0.73
HLA-DMB-262ENST00000498020 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.5□□□□□ -0.73
HLA-DMB-262ENST00000498020 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.49□□□□□ -0.73
HLA-DMB-262ENST00000498020 ADGRL1O94910 1474 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms