RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 ARHGEF12Q9NZN5 1544 aa15.32■□□□□ 0.04
CHMP3-209ENST00000494623 CCDC144AA2RUR9 1427 aa15.31■□□□□ 0.04
CHMP3-209ENST00000494623 ROCK2O75116 1388 aaKnown RBP15.31■□□□□ 0.04
CHMP3-209ENST00000494623 EFCAB2Q5VUJ9 269 aa15.3■□□□□ 0.04
CHMP3-209ENST00000494623 PLEKHH2Q8IVE3 1493 aa15.3■□□□□ 0.04
CHMP3-209ENST00000494623 ZBED9Q6R2W3 1325 aa15.3■□□□□ 0.04
CHMP3-209ENST00000494623 NBPF1Q3BBV0 1214 aa15.28■□□□□ 0.04
CHMP3-209ENST00000494623 PLCH2O75038 1416 aa15.27■□□□□ 0.04
CHMP3-209ENST00000494623 MYO5CQ9NQX4 1742 aa15.27■□□□□ 0.04
CHMP3-209ENST00000494623 MAST1Q9Y2H9 1570 aa15.27■□□□□ 0.03
CHMP3-209ENST00000494623 PLA2R1Q13018 1463 aa15.27■□□□□ 0.03
CHMP3-209ENST00000494623 SENP3-EIF4A1A0A087X0R7 540 aa15.25■□□□□ 0.03
CHMP3-209ENST00000494623 TMC1Q8TDI8 760 aa15.25■□□□□ 0.03
CHMP3-209ENST00000494623 PRAG1Q86YV5 1406 aa15.24■□□□□ 0.03
CHMP3-209ENST00000494623 ZCCHC11Q5TAX3 1644 aaKnown RBP15.24■□□□□ 0.03
CHMP3-209ENST00000494623 AFAP1Q8N556 730 aa15.23■□□□□ 0.03
CHMP3-209ENST00000494623 UNC13BO14795 1591 aa15.23■□□□□ 0.03
CHMP3-209ENST00000494623 TRAPPC8Q9Y2L5 1435 aa15.23■□□□□ 0.03
CHMP3-209ENST00000494623 DUOX2Q9NRD8 1548 aa15.23■□□□□ 0.03
CHMP3-209ENST00000494623 PNISRQ8TF01 805 aaKnown RBP15.22■□□□□ 0.03
CHMP3-209ENST00000494623 CLASP1Q7Z460 1538 aa15.21■□□□□ 0.03
CHMP3-209ENST00000494623 PLXNC1O60486 1568 aa15.21■□□□□ 0.03
CHMP3-209ENST00000494623 SPAG9O60271 1321 aaKnown RBP15.21■□□□□ 0.03
CHMP3-209ENST00000494623 UHRF1BP1LA0JNW5 1464 aa15.21■□□□□ 0.02
CHMP3-209ENST00000494623 A2MP01023 1474 aa15.2■□□□□ 0.02
CHMP3-209ENST00000494623 ERBINQ96RT1 1412 aa15.19■□□□□ 0.02
CHMP3-209ENST00000494623 RBM19Q9Y4C8 960 aaKnown RBP15.19■□□□□ 0.02
CHMP3-209ENST00000494623 PPP4R2Q9NY27 417 aa15.19■□□□□ 0.02
CHMP3-209ENST00000494623 IQGAP3Q86VI3 1631 aa15.18■□□□□ 0.02
CHMP3-209ENST00000494623 ERICH6BQ5W0A0 696 aa15.18■□□□□ 0.02
CHMP3-209ENST00000494623 MYT1LQ9UL68 1186 aa15.18■□□□□ 0.02
CHMP3-209ENST00000494623 RALBP1Q15311 655 aa15.18■□□□□ 0.02
CHMP3-209ENST00000494623 TRPM1Q7Z4N2 1603 aa15.17■□□□□ 0.02
CHMP3-209ENST00000494623 MYBBP1AQ9BQG0 1328 aaKnown RBP15.17■□□□□ 0.02
CHMP3-209ENST00000494623 ABCC1P33527 1531 aa15.16■□□□□ 0.02
CHMP3-209ENST00000494623 GPRASP1Q5JY77 1395 aa15.15■□□□□ 0.02
CHMP3-209ENST00000494623 TESK2Q96S53 571 aa15.14■□□□□ 0.01
CHMP3-209ENST00000494623 NUDCQ9Y266 331 aa15.14■□□□□ 0.01
CHMP3-209ENST00000494623 MAGI2Q86UL8 1455 aa15.14■□□□□ 0.01
CHMP3-209ENST00000494623 B4GALNT3Q6L9W6 998 aa15.13■□□□□ 0.01
CHMP3-209ENST00000494623 ATP10AO60312 1499 aa15.13■□□□□ 0.01
CHMP3-209ENST00000494623 SMG6Q86US8 1419 aaKnown RBP15.13■□□□□ 0.01
CHMP3-209ENST00000494623 BRD4O60885 1362 aaPredicted RBP15.12■□□□□ 0.01
CHMP3-209ENST00000494623 KTN1Q86UP2 1357 aaKnown RBP15.12■□□□□ 0.01
CHMP3-209ENST00000494623 DISP3Q9P2K9 1392 aa15.12■□□□□ 0.01
CHMP3-209ENST00000494623 PER1O15534 1290 aaPredicted RBP15.12■□□□□ 0.01
CHMP3-209ENST00000494623 CC2D1BQ5T0F9 858 aaKnown RBP15.12■□□□□ 0.01
CHMP3-209ENST00000494623 TMF1P82094 1093 aa15.11■□□□□ 0.01
CHMP3-209ENST00000494623 PANK3Q9H999 370 aa15.11■□□□□ 0.01
CHMP3-209ENST00000494623 RTEL1-TNFRSF6BF6WH68 1400 aa15.1■□□□□ 0.01
CHMP3-209ENST00000494623 KIF3BO15066 747 aa15.1■□□□□ 0.01
CHMP3-209ENST00000494623 SALL2Q9Y467 1007 aaPredicted RBP15.1■□□□□ 0.01
CHMP3-209ENST00000494623 NLRP13Q86W25 1043 aa15.09■□□□□ 0.01
CHMP3-209ENST00000494623 WDR7Q9Y4E6 1490 aa15.09■□□□□ 0.01
CHMP3-209ENST00000494623 LRPPRCP42704 1394 aaKnown RBP15.09■□□□□ 0.01
CHMP3-209ENST00000494623 PRDM15P57071 1507 aaPredicted RBP15.08■□□□□ 0.01
CHMP3-209ENST00000494623 FANCAO15360 1455 aa15.08■□□□□ 0
CHMP3-209ENST00000494623 E9PCH4 1651 aa15.08■□□□□ 0
CHMP3-209ENST00000494623 PARD3Q8TEW0 1356 aa15.07■□□□□ 0
CHMP3-209ENST00000494623 SCAPERQ9BY12 1400 aa15.07■□□□□ 0
CHMP3-209ENST00000494623 COL17A1Q9UMD9 1497 aaPredicted RBP15.07■□□□□ 0
CHMP3-209ENST00000494623 EIF2AK4Q9P2K8 1649 aaKnown RBP15.07■□□□□ 0
CHMP3-209ENST00000494623 ZFYVE16Q7Z3T8 1539 aa15.06■□□□□ 0
CHMP3-209ENST00000494623 KANK1Q14678 1352 aa15.06■□□□□ 0
CHMP3-209ENST00000494623 ARAP3Q8WWN8 1544 aa15.05■□□□□ 0
CHMP3-209ENST00000494623 LAMC1P11047 1609 aa15.04■□□□□ -0
CHMP3-209ENST00000494623 ADGRL1O94910 1474 aa15.03■□□□□ -0
CHMP3-209ENST00000494623 WASHC2CQ9Y4E1 1318 aa15.03■□□□□ -0
CHMP3-209ENST00000494623 RNF123Q5XPI4 1314 aa15.02■□□□□ -0
CHMP3-209ENST00000494623 ATP7AQ04656 1500 aa15.02■□□□□ -0
CHMP3-209ENST00000494623 PTPRTO14522 1441 aa15.02■□□□□ -0
CHMP3-209ENST00000494623 ASXL2Q76L83 1435 aa15.02■□□□□ -0
CHMP3-209ENST00000494623 NPM1P06748 294 aaKnown RBP eCLIP15.01□□□□□ -0.01
CHMP3-209ENST00000494623 TRPM2O94759 1503 aa15.01□□□□□ -0.01
CHMP3-209ENST00000494623 STAC3Q96MF2 364 aa15□□□□□ -0.01
CHMP3-209ENST00000494623 ANP32EQ9BTT0 268 aa15□□□□□ -0.01
CHMP3-209ENST00000494623 ABCA9Q8IUA7 1624 aa14.99□□□□□ -0.01
CHMP3-209ENST00000494623 KNSTRNQ9Y448 316 aa14.99□□□□□ -0.01
CHMP3-209ENST00000494623 CCDC136Q96JN2 1154 aa14.99□□□□□ -0.01
CHMP3-209ENST00000494623 CLTCL1P53675 1640 aa14.99□□□□□ -0.01
CHMP3-209ENST00000494623 MADDQ8WXG6 1647 aa14.98□□□□□ -0.01
CHMP3-209ENST00000494623 SPHKAPQ2M3C7 1700 aa14.97□□□□□ -0.01
CHMP3-209ENST00000494623 CFAP70Q5T0N1 1121 aa14.97□□□□□ -0.01
CHMP3-209ENST00000494623 DEPDC5O75140 1603 aa14.97□□□□□ -0.01
CHMP3-209ENST00000494623 INO80Q9ULG1 1556 aaPredicted RBP14.97□□□□□ -0.01
CHMP3-209ENST00000494623 CDCA8Q53HL2 280 aa14.97□□□□□ -0.01
CHMP3-209ENST00000494623 RNF17Q9BXT8 1623 aaKnown RBP14.96□□□□□ -0.01
CHMP3-209ENST00000494623 OSCARQ8IYS5 282 aa14.96□□□□□ -0.01
CHMP3-209ENST00000494623 CDCA7LQ96GN5 454 aa14.96□□□□□ -0.01
CHMP3-209ENST00000494623 TET3O43151 1660 aa14.96□□□□□ -0.01
CHMP3-209ENST00000494623 SCAF11Q99590 1463 aaKnown RBP14.96□□□□□ -0.01
CHMP3-209ENST00000494623 CEP152O94986 1710 aa14.95□□□□□ -0.02
CHMP3-209ENST00000494623 CHGAP10645 457 aaKnown RBP14.95□□□□□ -0.02
CHMP3-209ENST00000494623 RCAN3Q9UKA8 241 aa14.95□□□□□ -0.02
CHMP3-209ENST00000494623 PDE3BQ13370 1112 aa14.94□□□□□ -0.02
CHMP3-209ENST00000494623 ADGRF5Q8IZF2 1346 aa14.94□□□□□ -0.02
CHMP3-209ENST00000494623 VWDEQ8N2E2 1590 aa14.93□□□□□ -0.02
CHMP3-209ENST00000494623 UGGT1Q9NYU2 1555 aa14.93□□□□□ -0.02
CHMP3-209ENST00000494623 RRP1P56182 461 aaKnown RBP14.93□□□□□ -0.02
CHMP3-209ENST00000494623 GGT6Q6P531 493 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms