RNA–Protein interactions for RNA: ENST00000491292.5

ERCC3-208, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, human

TSL 2

Gene ERCC3, Length 4,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERCC3-208	ENST00000491292	DHX29	Q7Z478	1369 aa	Known RBP	12.6	□□□□□ -0.39
ERCC3-208	ENST00000491292	CHGA	P10645	457 aa	Known RBP	12.6	□□□□□ -0.39
ERCC3-208	ENST00000491292	PANK1	Q8TE04	598 aa		12.6	□□□□□ -0.39
ERCC3-208	ENST00000491292	UBE2Q2	Q8WVN8	375 aa		12.59	□□□□□ -0.39
ERCC3-208	ENST00000491292	ZBTB7C	A1YPR0	619 aa		12.59	□□□□□ -0.39
ERCC3-208	ENST00000491292	NCL	P19338	710 aa	Known RBP	12.59	□□□□□ -0.39
ERCC3-208	ENST00000491292	HSP90AA2P	Q14568	343 aa	Predicted RBP	12.58	□□□□□ -0.4
ERCC3-208	ENST00000491292	FAM43A	Q8N2R8	423 aa		12.57	□□□□□ -0.4
ERCC3-208	ENST00000491292	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.56	□□□□□ -0.4
ERCC3-208	ENST00000491292	ANP32B	Q92688	251 aa	Known RBP	12.56	□□□□□ -0.4
ERCC3-208	ENST00000491292	FTSJ3	Q8IY81	847 aa	Known RBP	12.55	□□□□□ -0.4
ERCC3-208	ENST00000491292	RPRD2	Q5VT52	1461 aa	Known RBP	12.55	□□□□□ -0.4
ERCC3-208	ENST00000491292	ANKRD30A	Q9BXX3	1397 aa		12.55	□□□□□ -0.4
ERCC3-208	ENST00000491292	CDK13	Q14004	1512 aa	Known RBP	12.55	□□□□□ -0.4
ERCC3-208	ENST00000491292	TPRN	Q4KMQ1	711 aa		12.54	□□□□□ -0.4
ERCC3-208	ENST00000491292	C8orf34	Q49A92	452 aa		12.53	□□□□□ -0.4
ERCC3-208	ENST00000491292	PKNOX2	Q96KN3	472 aa		12.53	□□□□□ -0.4
ERCC3-208	ENST00000491292	MYH16	Q9H6N6	1097 aa		12.53	□□□□□ -0.4
ERCC3-208	ENST00000491292	CENPJ	Q9HC77	1338 aa	Predicted RBP	12.52	□□□□□ -0.4
ERCC3-208	ENST00000491292	SEC24B	O95487	1268 aa		12.52	□□□□□ -0.41
ERCC3-208	ENST00000491292	HSP90AB1	P08238	724 aa	Known RBP	12.52	□□□□□ -0.41
ERCC3-208	ENST00000491292	HSCB	Q8IWL3	235 aa		12.51	□□□□□ -0.41
ERCC3-208	ENST00000491292	EFCAB5	A4FU69	1503 aa		12.51	□□□□□ -0.41
ERCC3-208	ENST00000491292	MIA2	Q96PC5	1412 aa		12.51	□□□□□ -0.41
ERCC3-208	ENST00000491292	SUPT6H	Q7KZ85	1726 aa	Known RBP	12.51	□□□□□ -0.41
ERCC3-208	ENST00000491292	DAPK1	P53355	1430 aa		12.5	□□□□□ -0.41
ERCC3-208	ENST00000491292	IGHD	P01880	384 aa		12.5	□□□□□ -0.41
ERCC3-208	ENST00000491292	PANK2	Q9BZ23	570 aa		12.5	□□□□□ -0.41
ERCC3-208	ENST00000491292	RRAGD	Q9NQL2	400 aa	Predicted RBP	12.5	□□□□□ -0.41
ERCC3-208	ENST00000491292	CFAP43	Q8NDM7	1665 aa		12.49	□□□□□ -0.41
ERCC3-208	ENST00000491292	EHBP1L1	Q8N3D4	1523 aa		12.49	□□□□□ -0.41
ERCC3-208	ENST00000491292	POLA1	P09884	1462 aa	Predicted RBP	12.49	□□□□□ -0.41
ERCC3-208	ENST00000491292	PPP2R1A	P30153	589 aa		12.49	□□□□□ -0.41
ERCC3-208	ENST00000491292	KIAA1107	Q9UPP5	1409 aa		12.48	□□□□□ -0.41
ERCC3-208	ENST00000491292	KDM6B	O15054	1643 aa		12.48	□□□□□ -0.41
ERCC3-208	ENST00000491292	ABCC5	O15440	1437 aa		12.48	□□□□□ -0.41
ERCC3-208	ENST00000491292	GAPVD1	Q14C86	1478 aa		12.48	□□□□□ -0.41
ERCC3-208	ENST00000491292	DUSP27	Q5VZP5	1158 aa		12.47	□□□□□ -0.41
ERCC3-208	ENST00000491292	ANKRD50	Q9ULJ7	1429 aa		12.47	□□□□□ -0.41
ERCC3-208	ENST00000491292	SPATA31E1	Q6ZUB1	1445 aa		12.46	□□□□□ -0.41
ERCC3-208	ENST00000491292	TRAK2	O60296	914 aa		12.46	□□□□□ -0.41
ERCC3-208	ENST00000491292	U2SURP	O15042	1029 aa	Known RBP	12.46	□□□□□ -0.42
ERCC3-208	ENST00000491292	RWDD1	Q9H446	243 aa	Predicted RBP	12.46	□□□□□ -0.42
ERCC3-208	ENST00000491292	MAPK8IP3	Q9UPT6	1336 aa		12.45	□□□□□ -0.42
ERCC3-208	ENST00000491292	ITPRIP	Q8IWB1	547 aa		12.45	□□□□□ -0.42
ERCC3-208	ENST00000491292	PDZRN3	Q9UPQ7	1066 aa		12.45	□□□□□ -0.42
ERCC3-208	ENST00000491292	CDCA8	Q53HL2	280 aa		12.45	□□□□□ -0.42
ERCC3-208	ENST00000491292	KDM5B	Q9UGL1	1544 aa		12.45	□□□□□ -0.42
ERCC3-208	ENST00000491292	CCDC144A	A2RUR9	1427 aa		12.45	□□□□□ -0.42
ERCC3-208	ENST00000491292	MORC1	Q86VD1	984 aa		12.44	□□□□□ -0.42
ERCC3-208	ENST00000491292	CGNL1	Q0VF96	1302 aa		12.44	□□□□□ -0.42
ERCC3-208	ENST00000491292	PRG4	Q92954	1404 aa	Predicted RBP	12.44	□□□□□ -0.42
ERCC3-208	ENST00000491292		E9PSI1	815 aa		12.44	□□□□□ -0.42
ERCC3-208	ENST00000491292	LRPPRC	P42704	1394 aa	Known RBP	12.44	□□□□□ -0.42
ERCC3-208	ENST00000491292	PMFBP1	Q8TBY8	1022 aa		12.44	□□□□□ -0.42
ERCC3-208	ENST00000491292	SNAPC4	Q5SXM2	1469 aa		12.44	□□□□□ -0.42
ERCC3-208	ENST00000491292	EPRS	P07814	1512 aa	Known RBP	12.43	□□□□□ -0.42
ERCC3-208	ENST00000491292	XRCC6	P12956	609 aa	Known RBP eCLIP	12.43	□□□□□ -0.42
ERCC3-208	ENST00000491292	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.43	□□□□□ -0.42
ERCC3-208	ENST00000491292	SLFN5	Q08AF3	891 aa		12.43	□□□□□ -0.42
ERCC3-208	ENST00000491292	TBC1D2	Q9BYX2	928 aa		12.43	□□□□□ -0.42
ERCC3-208	ENST00000491292	TEX14	Q8IWB6	1497 aa		12.42	□□□□□ -0.42
ERCC3-208	ENST00000491292	MCM4	P33991	863 aa		12.42	□□□□□ -0.42
ERCC3-208	ENST00000491292	C22orf23	Q9BZE7	217 aa		12.42	□□□□□ -0.42
ERCC3-208	ENST00000491292	DENND4B	O75064	1496 aa	Predicted RBP	12.42	□□□□□ -0.42
ERCC3-208	ENST00000491292	GOLGA6L22	H0YM25	854 aa		12.42	□□□□□ -0.42
ERCC3-208	ENST00000491292	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.42	□□□□□ -0.42
ERCC3-208	ENST00000491292	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.42	□□□□□ -0.42
ERCC3-208	ENST00000491292	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.41	□□□□□ -0.42
ERCC3-208	ENST00000491292	ZMYND15	Q9H091	742 aa		12.41	□□□□□ -0.42
ERCC3-208	ENST00000491292	TNN	Q9UQP3	1299 aa		12.41	□□□□□ -0.42
ERCC3-208	ENST00000491292	TOPBP1	Q92547	1522 aa		12.41	□□□□□ -0.42
ERCC3-208	ENST00000491292	CHMP5	Q9NZZ3	219 aa		12.41	□□□□□ -0.42
ERCC3-208	ENST00000491292	MSN	P26038	577 aa	Known RBP	12.41	□□□□□ -0.42
ERCC3-208	ENST00000491292	RBM10	P98175	930 aa	Known RBP	12.4	□□□□□ -0.42
ERCC3-208	ENST00000491292	SMC4	Q9NTJ3	1288 aa		12.4	□□□□□ -0.42
ERCC3-208	ENST00000491292	PRDM2	Q13029	1718 aa		12.4	□□□□□ -0.42
ERCC3-208	ENST00000491292	PLEKHH1	Q9ULM0	1364 aa		12.4	□□□□□ -0.42
ERCC3-208	ENST00000491292	KDM2B	Q8NHM5	1336 aa		12.4	□□□□□ -0.42
ERCC3-208	ENST00000491292	DISP3	Q9P2K9	1392 aa		12.4	□□□□□ -0.42
ERCC3-208	ENST00000491292	GRIN2B	Q13224	1484 aa		12.4	□□□□□ -0.42
ERCC3-208	ENST00000491292	UGGT2	Q9NYU1	1516 aa		12.4	□□□□□ -0.42
ERCC3-208	ENST00000491292	APBB1	O00213	710 aa		12.4	□□□□□ -0.43
ERCC3-208	ENST00000491292	FOXD4L5	Q5VV16	416 aa	Predicted RBP	12.4	□□□□□ -0.43
ERCC3-208	ENST00000491292	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	12.4	□□□□□ -0.43
ERCC3-208	ENST00000491292	PER1	O15534	1290 aa	Predicted RBP	12.39	□□□□□ -0.43
ERCC3-208	ENST00000491292	DNTTIP2	Q5QJE6	756 aa	Known RBP	12.38	□□□□□ -0.43
ERCC3-208	ENST00000491292	FAM13B	Q9NYF5	915 aa		12.38	□□□□□ -0.43
ERCC3-208	ENST00000491292	PTMA	P06454	111 aa	Known RBP	12.38	□□□□□ -0.43
ERCC3-208	ENST00000491292	GBP4	Q96PP9	640 aa		12.38	□□□□□ -0.43
ERCC3-208	ENST00000491292	ROCK1	Q13464	1354 aa		12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	CFAP53	Q96M91	514 aa		12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	LNPK	Q9C0E8	428 aa		12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	MAGI3	Q5TCQ9	1506 aa		12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	THOC2	Q8NI27	1593 aa	Known RBP	12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	MRE11	P49959	708 aa		12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	DMRT2	Q9Y5R5	561 aa		12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	ABCA10	Q8WWZ4	1543 aa		12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	ESPN	B1AK53	854 aa		12.37	□□□□□ -0.43
ERCC3-208	ENST00000491292	GRPEL1	Q9HAV7	217 aa		12.37	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms