RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 GCC2Q8IWJ2 1684 aa9.72□□□□□ -0.85
NPHP3-208ENST00000490993 AFAP1Q8N556 730 aa9.71□□□□□ -0.86
NPHP3-208ENST00000490993 PLCH2O75038 1416 aa9.7□□□□□ -0.86
NPHP3-208ENST00000490993 IRX6P78412 446 aaPredicted RBP9.7□□□□□ -0.86
NPHP3-208ENST00000490993 ABCC2Q92887 1545 aa9.7□□□□□ -0.86
NPHP3-208ENST00000490993 POGKQ9P215 609 aa9.7□□□□□ -0.86
NPHP3-208ENST00000490993 ZBED9Q6R2W3 1325 aa9.69□□□□□ -0.86
NPHP3-208ENST00000490993 ANP32AP39687 249 aaKnown RBP9.69□□□□□ -0.86
NPHP3-208ENST00000490993 ABCA8O94911 1581 aa9.69□□□□□ -0.86
NPHP3-208ENST00000490993 SCAPERQ9BY12 1400 aa9.68□□□□□ -0.86
NPHP3-208ENST00000490993 PDE3BQ13370 1112 aa9.68□□□□□ -0.86
NPHP3-208ENST00000490993 DUOX2Q9NRD8 1548 aa9.67□□□□□ -0.86
NPHP3-208ENST00000490993 ERBINQ96RT1 1412 aa9.67□□□□□ -0.86
NPHP3-208ENST00000490993 VGFO15240 615 aaPredicted RBP9.67□□□□□ -0.86
NPHP3-208ENST00000490993 NUDCQ9Y266 331 aa9.67□□□□□ -0.86
NPHP3-208ENST00000490993 ADGBQ8N7X0 1667 aa9.66□□□□□ -0.86
NPHP3-208ENST00000490993 PANK3Q9H999 370 aa9.66□□□□□ -0.86
NPHP3-208ENST00000490993 MORC1Q86VD1 984 aa9.65□□□□□ -0.86
NPHP3-208ENST00000490993 PNNQ9H307 717 aaKnown RBP9.65□□□□□ -0.86
NPHP3-208ENST00000490993 ADGRL1O94910 1474 aa9.65□□□□□ -0.87
NPHP3-208ENST00000490993 SYCP2Q9BX26 1530 aa9.65□□□□□ -0.87
NPHP3-208ENST00000490993 ARHGEF5Q12774 1597 aa9.64□□□□□ -0.87
NPHP3-208ENST00000490993 BRD4O60885 1362 aaPredicted RBP9.64□□□□□ -0.87
NPHP3-208ENST00000490993 CYB5RLQ6IPT4 315 aa9.64□□□□□ -0.87
NPHP3-208ENST00000490993 FANCAO15360 1455 aa9.64□□□□□ -0.87
NPHP3-208ENST00000490993 ABCC10Q5T3U5 1492 aa9.63□□□□□ -0.87
NPHP3-208ENST00000490993 RTL5Q5HYW3 569 aaPredicted RBP9.63□□□□□ -0.87
NPHP3-208ENST00000490993 WDR7Q9Y4E6 1490 aa9.63□□□□□ -0.87
NPHP3-208ENST00000490993 PZPP20742 1482 aa9.63□□□□□ -0.87
NPHP3-208ENST00000490993 SRPK2P78362 688 aaKnown RBP9.63□□□□□ -0.87
NPHP3-208ENST00000490993 ZBTB47Q9UFB7 747 aaPredicted RBP9.62□□□□□ -0.87
NPHP3-208ENST00000490993 CD109Q6YHK3 1445 aa9.62□□□□□ -0.87
NPHP3-208ENST00000490993 ARHGEF12Q9NZN5 1544 aa9.62□□□□□ -0.87
NPHP3-208ENST00000490993 RTEL1-TNFRSF6BF6WH68 1400 aa9.62□□□□□ -0.87
NPHP3-208ENST00000490993 FAM135AQ9P2D6 1515 aa9.62□□□□□ -0.87
NPHP3-208ENST00000490993 UHRF1BP1LA0JNW5 1464 aa9.62□□□□□ -0.87
NPHP3-208ENST00000490993 ADCY10Q96PN6 1610 aa9.62□□□□□ -0.87
NPHP3-208ENST00000490993 RALGAPBQ86X10 1494 aa9.62□□□□□ -0.87
NPHP3-208ENST00000490993 HDGFL2Q7Z4V5 671 aaPredicted RBP9.61□□□□□ -0.87
NPHP3-208ENST00000490993 RPGRIP1LQ68CZ1 1315 aa9.61□□□□□ -0.87
NPHP3-208ENST00000490993 FAM69CQ0P6D2 419 aa9.6□□□□□ -0.87
NPHP3-208ENST00000490993 DHX29Q7Z478 1369 aaKnown RBP9.6□□□□□ -0.87
NPHP3-208ENST00000490993 EVC2Q86UK5 1308 aa9.6□□□□□ -0.87
NPHP3-208ENST00000490993 MAPK8IP3Q9UPT6 1336 aa9.6□□□□□ -0.87
NPHP3-208ENST00000490993 MLECQ14165 292 aa9.6□□□□□ -0.87
NPHP3-208ENST00000490993 TERF2IPQ9NYB0 399 aa9.6□□□□□ -0.87
NPHP3-208ENST00000490993 RCAN3Q9UKA8 241 aa9.6□□□□□ -0.87
NPHP3-208ENST00000490993 NBPF1Q3BBV0 1214 aa9.59□□□□□ -0.87
NPHP3-208ENST00000490993 NGEFQ8N5V2 710 aa9.59□□□□□ -0.87
NPHP3-208ENST00000490993 CENPJQ9HC77 1338 aaPredicted RBP9.59□□□□□ -0.87
NPHP3-208ENST00000490993 ASXL2Q76L83 1435 aa9.59□□□□□ -0.87
NPHP3-208ENST00000490993 TRAK1Q9UPV9 953 aa9.59□□□□□ -0.87
NPHP3-208ENST00000490993 STK26Q9P289 416 aa9.58□□□□□ -0.88
NPHP3-208ENST00000490993 MS4A1P11836 297 aa9.57□□□□□ -0.88
NPHP3-208ENST00000490993 UHRF1BP1Q6BDS2 1440 aa9.57□□□□□ -0.88
NPHP3-208ENST00000490993 CHD1O14646 1710 aa9.57□□□□□ -0.88
NPHP3-208ENST00000490993 PLPPR3Q6T4P5 718 aa9.57□□□□□ -0.88
NPHP3-208ENST00000490993 TEX14Q8IWB6 1497 aa9.57□□□□□ -0.88
NPHP3-208ENST00000490993 SENP3Q9H4L4 574 aaPredicted RBP9.57□□□□□ -0.88
NPHP3-208ENST00000490993 TNNT2P45379 298 aaPredicted RBP9.56□□□□□ -0.88
NPHP3-208ENST00000490993 SLC52A1Q9NWF4 448 aa9.56□□□□□ -0.88
NPHP3-208ENST00000490993 C11orf95C9JLR9 678 aaPredicted RBP9.56□□□□□ -0.88
NPHP3-208ENST00000490993 CGNL1Q0VF96 1302 aa9.56□□□□□ -0.88
NPHP3-208ENST00000490993 EIF2AK4Q9P2K8 1649 aaKnown RBP9.56□□□□□ -0.88
NPHP3-208ENST00000490993 SENP3-EIF4A1A0A087X0R7 540 aa9.56□□□□□ -0.88
NPHP3-208ENST00000490993 GOLGA2Q08379 1002 aa9.56□□□□□ -0.88
NPHP3-208ENST00000490993 B4GALNT3Q6L9W6 998 aa9.56□□□□□ -0.88
NPHP3-208ENST00000490993 TRAPPC8Q9Y2L5 1435 aa9.56□□□□□ -0.88
NPHP3-208ENST00000490993 ZNF518AQ6AHZ1 1483 aa9.56□□□□□ -0.88
NPHP3-208ENST00000490993 MBD5Q9P267 1494 aa9.55□□□□□ -0.88
NPHP3-208ENST00000490993 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.55□□□□□ -0.88
NPHP3-208ENST00000490993 SAFB2Q14151 953 aaKnown RBP eCLIP9.55□□□□□ -0.88
NPHP3-208ENST00000490993 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.55□□□□□ -0.88
NPHP3-208ENST00000490993 PREX2Q70Z35 1606 aa9.55□□□□□ -0.88
NPHP3-208ENST00000490993 MYO5CQ9NQX4 1742 aa9.55□□□□□ -0.88
NPHP3-208ENST00000490993 KDM5BQ9UGL1 1544 aa9.55□□□□□ -0.88
NPHP3-208ENST00000490993 DENND4BO75064 1496 aaPredicted RBP9.55□□□□□ -0.88
NPHP3-208ENST00000490993 UPF2Q9HAU5 1272 aaKnown RBP9.54□□□□□ -0.88
NPHP3-208ENST00000490993 CFAP70Q5T0N1 1121 aa9.54□□□□□ -0.88
NPHP3-208ENST00000490993 PRAG1Q86YV5 1406 aa9.54□□□□□ -0.88
NPHP3-208ENST00000490993 LRRIQ1Q96JM4 1722 aa9.54□□□□□ -0.88
NPHP3-208ENST00000490993 U2SURPO15042 1029 aaKnown RBP9.53□□□□□ -0.88
NPHP3-208ENST00000490993 KDM6BO15054 1643 aa9.53□□□□□ -0.88
NPHP3-208ENST00000490993 NPM2Q86SE8 214 aaKnown RBP9.53□□□□□ -0.88
NPHP3-208ENST00000490993 SAMD9LQ8IVG5 1584 aa9.53□□□□□ -0.88
NPHP3-208ENST00000490993 NEUROD2Q15784 382 aa9.53□□□□□ -0.88
NPHP3-208ENST00000490993 PNISRQ8TF01 805 aaKnown RBP9.53□□□□□ -0.88
NPHP3-208ENST00000490993 NUTM2DQ5VT03 806 aaPredicted RBP9.52□□□□□ -0.88
NPHP3-208ENST00000490993 CHMP4BQ9H444 224 aaKnown RBP9.52□□□□□ -0.88
NPHP3-208ENST00000490993 SCAF11Q99590 1463 aaKnown RBP9.52□□□□□ -0.88
NPHP3-208ENST00000490993 MAST1Q9Y2H9 1570 aa9.52□□□□□ -0.88
NPHP3-208ENST00000490993 MYH16Q9H6N6 1097 aa9.52□□□□□ -0.89
NPHP3-208ENST00000490993 KDM5DQ9BY66 1539 aa9.52□□□□□ -0.89
NPHP3-208ENST00000490993 EID1Q9Y6B2 187 aa9.52□□□□□ -0.89
NPHP3-208ENST00000490993 PPM1GO15355 546 aaPredicted RBP9.52□□□□□ -0.89
NPHP3-208ENST00000490993 A2MP01023 1474 aa9.51□□□□□ -0.89
NPHP3-208ENST00000490993 RAPGEF3O95398 923 aa9.51□□□□□ -0.89
NPHP3-208ENST00000490993 DDRGK1Q96HY6 314 aa9.51□□□□□ -0.89
NPHP3-208ENST00000490993 PPP6R1Q9UPN7 881 aa9.51□□□□□ -0.89
NPHP3-208ENST00000490993 CALD1Q05682 793 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms