RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 ARHGEF1Q92888 912 aaKnown RBP10.58□□□□□ -0.72
HMGN1-218ENST00000490032 RNF166Q96A37 237 aaPredicted RBP10.57□□□□□ -0.72
HMGN1-218ENST00000490032 ZBED2Q9BTP6 218 aa10.56□□□□□ -0.72
HMGN1-218ENST00000490032 VPS9D1Q9Y2B5 631 aa10.56□□□□□ -0.72
HMGN1-218ENST00000490032 PPP1R3GB7ZBB8 358 aa10.55□□□□□ -0.72
HMGN1-218ENST00000490032 HAP1P54257 671 aaPredicted RBP10.55□□□□□ -0.72
HMGN1-218ENST00000490032 P3H3Q8IVL6 736 aa10.54□□□□□ -0.72
HMGN1-218ENST00000490032 EN1Q05925 392 aaPredicted RBP10.53□□□□□ -0.72
HMGN1-218ENST00000490032 NBR1Q14596 966 aa10.53□□□□□ -0.72
HMGN1-218ENST00000490032 C6orf132Q5T0Z8 1188 aa10.53□□□□□ -0.72
HMGN1-218ENST00000490032 COL9A1P20849 921 aa10.52□□□□□ -0.73
HMGN1-218ENST00000490032 BHMG1C9JSJ3 638 aaPredicted RBP10.5□□□□□ -0.73
HMGN1-218ENST00000490032 RBM33Q96EV2 1170 aaKnown RBP10.5□□□□□ -0.73
HMGN1-218ENST00000490032 GRXCR2A6NFK2 248 aa10.49□□□□□ -0.73
HMGN1-218ENST00000490032 OSBPP22059 807 aa10.48□□□□□ -0.73
HMGN1-218ENST00000490032 PRIM1P49642 420 aaKnown RBP10.48□□□□□ -0.73
HMGN1-218ENST00000490032 MAP3K7O43318 606 aa10.47□□□□□ -0.73
HMGN1-218ENST00000490032 KDM2AQ9Y2K7 1162 aa10.47□□□□□ -0.73
HMGN1-218ENST00000490032 ONECUT3O60422 494 aaPredicted RBP10.46□□□□□ -0.73
HMGN1-218ENST00000490032 TSR1Q2NL82 804 aaKnown RBP10.46□□□□□ -0.73
HMGN1-218ENST00000490032 PROX2Q3B8N5 592 aa10.45□□□□□ -0.74
HMGN1-218ENST00000490032 RABGEF1Q9UJ41 708 aa10.45□□□□□ -0.74
HMGN1-218ENST00000490032 STAC3Q96MF2 364 aa10.44□□□□□ -0.74
HMGN1-218ENST00000490032 MLLT3P42568 568 aaPredicted RBP10.43□□□□□ -0.74
HMGN1-218ENST00000490032 VSIG10Q8N0Z9 540 aa10.43□□□□□ -0.74
HMGN1-218ENST00000490032 NBPF3Q9H094 633 aa10.42□□□□□ -0.74
HMGN1-218ENST00000490032 TRIM6-TRIM34B2RNG4 842 aa10.41□□□□□ -0.74
HMGN1-218ENST00000490032 CERKQ8TCT0 537 aa10.41□□□□□ -0.74
HMGN1-218ENST00000490032 MRPL50Q8N5N7 158 aaKnown RBP10.4□□□□□ -0.74
HMGN1-218ENST00000490032 CDHR5Q9HBB8 845 aa10.38□□□□□ -0.75
HMGN1-218ENST00000490032 KIAA1468Q9P260 1216 aa10.38□□□□□ -0.75
HMGN1-218ENST00000490032 SEMA3EO15041 775 aa10.37□□□□□ -0.75
HMGN1-218ENST00000490032 LAPTM4BQ86VI4 370 aa10.37□□□□□ -0.75
HMGN1-218ENST00000490032 KCTD12Q96CX2 325 aaKnown RBP10.37□□□□□ -0.75
HMGN1-218ENST00000490032 PRSS12P56730 875 aa10.36□□□□□ -0.75
HMGN1-218ENST00000490032 HCSTQ9UBK5 93 aa10.36□□□□□ -0.75
HMGN1-218ENST00000490032 TSKSQ9UJT2 592 aa10.36□□□□□ -0.75
HMGN1-218ENST00000490032 CDCA7LQ96GN5 454 aa10.35□□□□□ -0.75
HMGN1-218ENST00000490032 NPDC1Q9NQX5 325 aaPredicted RBP10.35□□□□□ -0.75
HMGN1-218ENST00000490032 RBM27Q9P2N5 1060 aaKnown RBP10.35□□□□□ -0.75
HMGN1-218ENST00000490032 GOLGA8CPA6NN73 597 aa10.34□□□□□ -0.75
HMGN1-218ENST00000490032 TESPA1A2RU30 521 aaPredicted RBP10.33□□□□□ -0.76
HMGN1-218ENST00000490032 PACS2Q86VP3 889 aa10.33□□□□□ -0.76
HMGN1-218ENST00000490032 FAM198AQ9UFP1 575 aa10.33□□□□□ -0.76
HMGN1-218ENST00000490032 THSD4Q6ZMP0 1018 aa10.32□□□□□ -0.76
HMGN1-218ENST00000490032 WNT2BQ93097 391 aa10.32□□□□□ -0.76
HMGN1-218ENST00000490032 TTC13Q8NBP0 860 aa10.31□□□□□ -0.76
HMGN1-218ENST00000490032 SEPT9Q9UHD8 586 aaPredicted RBP10.31□□□□□ -0.76
HMGN1-218ENST00000490032 FAM98CQ17RN3 349 aaKnown RBP10.3□□□□□ -0.76
HMGN1-218ENST00000490032 ZFRQ96KR1 1074 aaKnown RBP10.3□□□□□ -0.76
HMGN1-218ENST00000490032 PTGDRQ13258 359 aa10.28□□□□□ -0.76
HMGN1-218ENST00000490032 ANKK1Q8NFD2 765 aa10.28□□□□□ -0.76
HMGN1-218ENST00000490032 C3orf80F5H4A9 247 aa10.27□□□□□ -0.77
HMGN1-218ENST00000490032 NBPF26B4DH59 902 aa10.26□□□□□ -0.77
HMGN1-218ENST00000490032 SMYD5Q6GMV2 418 aa10.26□□□□□ -0.77
HMGN1-218ENST00000490032 PADI6Q6TGC4 694 aa10.26□□□□□ -0.77
HMGN1-218ENST00000490032 TATDN2Q93075 761 aa10.26□□□□□ -0.77
HMGN1-218ENST00000490032 SOWAHBA6NEL2 793 aa10.25□□□□□ -0.77
HMGN1-218ENST00000490032 PTPN5P54829 565 aa10.25□□□□□ -0.77
HMGN1-218ENST00000490032 NUTM2FA1L443 756 aa10.24□□□□□ -0.77
HMGN1-218ENST00000490032 PNMA3Q9UL41 463 aa10.24□□□□□ -0.77
HMGN1-218ENST00000490032 SMAPO00193 183 aa10.23□□□□□ -0.77
HMGN1-218ENST00000490032 BCAMP50895 628 aa10.22□□□□□ -0.77
HMGN1-218ENST00000490032 NUDT18Q6ZVK8 323 aa10.22□□□□□ -0.77
HMGN1-218ENST00000490032 FCHSD2O94868 740 aa10.21□□□□□ -0.77
HMGN1-218ENST00000490032 RBM26Q5T8P6 1007 aaKnown RBP10.21□□□□□ -0.77
HMGN1-218ENST00000490032 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.2□□□□□ -0.78
HMGN1-218ENST00000490032 LRCH3Q96II8 777 aa10.19□□□□□ -0.78
HMGN1-218ENST00000490032 EYA1Q99502 592 aa10.18□□□□□ -0.78
HMGN1-218ENST00000490032 PLA2G2EQ9NZK7 142 aa10.18□□□□□ -0.78
HMGN1-218ENST00000490032 HIC1Q14526 733 aa10.17□□□□□ -0.78
HMGN1-218ENST00000490032 NYAP1Q6ZVC0 841 aa10.17□□□□□ -0.78
HMGN1-218ENST00000490032 SAMD7Q7Z3H4 446 aa10.17□□□□□ -0.78
HMGN1-218ENST00000490032 GPR37O15354 613 aa10.16□□□□□ -0.78
HMGN1-218ENST00000490032 TSR3Q9UJK0 312 aaKnown RBP10.16□□□□□ -0.78
HMGN1-218ENST00000490032 WBP1LQ9NX94 342 aa10.15□□□□□ -0.78
HMGN1-218ENST00000490032 HPS5Q9UPZ3 1129 aa10.15□□□□□ -0.78
HMGN1-218ENST00000490032 ADGRG1Q9Y653 693 aa10.15□□□□□ -0.78
HMGN1-218ENST00000490032 IFFO2Q5TF58 517 aa10.12□□□□□ -0.79
HMGN1-218ENST00000490032 RBM46Q8TBY0 533 aaKnown RBP10.12□□□□□ -0.79
HMGN1-218ENST00000490032 GNPATO15228 680 aa10.11□□□□□ -0.79
HMGN1-218ENST00000490032 HDGFP51858 240 aaKnown RBP10.11□□□□□ -0.79
HMGN1-218ENST00000490032 PPP4CP60510 307 aa10.1□□□□□ -0.79
HMGN1-218ENST00000490032 SWT1Q5T5J6 900 aaKnown RBP10.1□□□□□ -0.79
HMGN1-218ENST00000490032 GPIHBP1Q8IV16 184 aa10.1□□□□□ -0.79
HMGN1-218ENST00000490032 TULP1O00294 542 aaPredicted RBP10.09□□□□□ -0.79
HMGN1-218ENST00000490032 DNAJB2P25686 324 aa10.09□□□□□ -0.79
HMGN1-218ENST00000490032 ITGBL1O95965 494 aaPredicted RBP10.08□□□□□ -0.8
HMGN1-218ENST00000490032 FECHP22830 423 aa10.08□□□□□ -0.8
HMGN1-218ENST00000490032 FAM161AQ3B820 660 aa10.08□□□□□ -0.8
HMGN1-218ENST00000490032 OATP04181 439 aa10.07□□□□□ -0.8
HMGN1-218ENST00000490032 SLF2Q8IX21 1173 aa10.07□□□□□ -0.8
HMGN1-218ENST00000490032 PXYLP1Q8TE99 480 aa10.07□□□□□ -0.8
HMGN1-218ENST00000490032 RCCD1A6NED2 376 aa10.06□□□□□ -0.8
HMGN1-218ENST00000490032 TMEM134Q9H6X4 195 aa10.06□□□□□ -0.8
HMGN1-218ENST00000490032 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.05□□□□□ -0.8
HMGN1-218ENST00000490032 NECTIN2Q92692 538 aa10.05□□□□□ -0.8
HMGN1-218ENST00000490032 METTL3Q86U44 580 aaKnown RBP10.04□□□□□ -0.8
HMGN1-218ENST00000490032 RNF40O75150 1001 aa10.03□□□□□ -0.8
HMGN1-218ENST00000490032 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms