RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 AEBP2Q6ZN18 517 aaPredicted RBP24.91■■□□□ 1.58
HMGN1-218ENST00000490032 CHIC1Q5VXU3 224 aa24.04■■□□□ 1.44
HMGN1-218ENST00000490032 SENP3Q9H4L4 574 aaPredicted RBP21.18■□□□□ 0.98
HMGN1-218ENST00000490032 PHF23Q9BUL5 403 aaPredicted RBP21.11■□□□□ 0.97
HMGN1-218ENST00000490032 FOXD1Q16676 465 aa19.69■□□□□ 0.74
HMGN1-218ENST00000490032 PLPPR3Q6T4P5 718 aa19.38■□□□□ 0.69
HMGN1-218ENST00000490032 PPP6R1Q9UPN7 881 aa18.71■□□□□ 0.59
HMGN1-218ENST00000490032 ADRA2BP18089 450 aa18.65■□□□□ 0.58
HMGN1-218ENST00000490032 PIAS4Q8N2W9 510 aaPredicted RBP18.46■□□□□ 0.55
HMGN1-218ENST00000490032 MSH5O43196 834 aa18.28■□□□□ 0.52
HMGN1-218ENST00000490032 POTEDQ86YR6 584 aa17.16■□□□□ 0.34
HMGN1-218ENST00000490032 SCAF1Q9H7N4 1312 aaKnown RBP17.08■□□□□ 0.32
HMGN1-218ENST00000490032 PPP4R3CPQ6ZMV5 832 aa17.03■□□□□ 0.32
HMGN1-218ENST00000490032 MAPK8IP2Q13387 824 aaPredicted RBP17.01■□□□□ 0.31
HMGN1-218ENST00000490032 DMRT2Q9Y5R5 561 aa16.87■□□□□ 0.29
HMGN1-218ENST00000490032 CNKSR2Q8WXI2 1034 aa16.64■□□□□ 0.25
HMGN1-218ENST00000490032 NCBP3Q53F19 620 aaKnown RBP16.49■□□□□ 0.23
HMGN1-218ENST00000490032 HOXD11P31277 338 aaPredicted RBP16.42■□□□□ 0.22
HMGN1-218ENST00000490032 RNF216Q9NWF9 866 aaPredicted RBP16.39■□□□□ 0.21
HMGN1-218ENST00000490032 KCNA4P22459 653 aa16.28■□□□□ 0.2
HMGN1-218ENST00000490032 NPM3O75607 178 aaKnown RBP16.26■□□□□ 0.19
HMGN1-218ENST00000490032 DCAF8L1A6NGE4 600 aa16.06■□□□□ 0.16
HMGN1-218ENST00000490032 DNAJC5BQ9UF47 199 aa15.93■□□□□ 0.14
HMGN1-218ENST00000490032 RNF39Q9H2S5 420 aa15.65■□□□□ 0.1
HMGN1-218ENST00000490032 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.58■□□□□ 0.085e-7■■□□□ 14.5
HMGN1-218ENST00000490032 SLC4A2P04920 1241 aa15.44■□□□□ 0.06
HMGN1-218ENST00000490032 C1QBPQ07021 282 aaKnown RBP15.44■□□□□ 0.06
HMGN1-218ENST00000490032 SLC4A1APQ9BWU0 796 aaKnown RBP15.44■□□□□ 0.06
HMGN1-218ENST00000490032 CACNB1Q02641 598 aaPredicted RBP15.41■□□□□ 0.06
HMGN1-218ENST00000490032 U3KPZ7 1027 aaPredicted RBP15.33■□□□□ 0.04
HMGN1-218ENST00000490032 FOXD4L1Q9NU39 408 aa15.09■□□□□ 0.01
HMGN1-218ENST00000490032 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.03■□□□□ -0
HMGN1-218ENST00000490032 MYCNP04198 464 aaPredicted RBP15.03■□□□□ -0
HMGN1-218ENST00000490032 HNRNPUL2Q1KMD3 747 aaKnown RBP15.03■□□□□ -0
HMGN1-218ENST00000490032 ZBTB22O15209 634 aa14.99□□□□□ -0.01
HMGN1-218ENST00000490032 SAMD1Q6SPF0 538 aaPredicted RBP14.97□□□□□ -0.01
HMGN1-218ENST00000490032 SPINK5Q9NQ38 1064 aaPredicted RBP14.97□□□□□ -0.01
HMGN1-218ENST00000490032 APLP2Q06481 763 aa14.95□□□□□ -0.02
HMGN1-218ENST00000490032 CAPN15O75808 1086 aa14.9□□□□□ -0.02
HMGN1-218ENST00000490032 ZNF219Q9P2Y4 722 aaPredicted RBP14.79□□□□□ -0.04
HMGN1-218ENST00000490032 DSG3P32926 999 aa14.78□□□□□ -0.04
HMGN1-218ENST00000490032 TRHP20396 242 aaPredicted RBP14.75□□□□□ -0.05
HMGN1-218ENST00000490032 CSRNP3Q8WYN3 585 aa14.66□□□□□ -0.06
HMGN1-218ENST00000490032 ATF5Q9Y2D1 282 aaPredicted RBP14.64□□□□□ -0.07
HMGN1-218ENST00000490032 ATXN8OSP0DMR3 200 aa14.62□□□□□ -0.07
HMGN1-218ENST00000490032 EHMT2Q96KQ7 1210 aa14.61□□□□□ -0.07
HMGN1-218ENST00000490032 ABCB7O75027 752 aa14.58□□□□□ -0.08
HMGN1-218ENST00000490032 POLA2Q14181 598 aa14.47□□□□□ -0.09
HMGN1-218ENST00000490032 ZBTB12Q9Y330 459 aaPredicted RBP14.24□□□□□ -0.13
HMGN1-218ENST00000490032 RBM42Q9BTD8 480 aaKnown RBP14.08□□□□□ -0.16
HMGN1-218ENST00000490032 FBLN2P98095 1184 aa14.03□□□□□ -0.16
HMGN1-218ENST00000490032 MKRN4PQ13434 485 aaPredicted RBP14□□□□□ -0.17
HMGN1-218ENST00000490032 OSCARQ8IYS5 282 aa13.99□□□□□ -0.17
HMGN1-218ENST00000490032 AKT1S1Q96B36 256 aa13.85□□□□□ -0.19
HMGN1-218ENST00000490032 SPDYE2BA6NHP3 402 aa13.84□□□□□ -0.19
HMGN1-218ENST00000490032 SPDYE6P0CI01 402 aa13.84□□□□□ -0.19
HMGN1-218ENST00000490032 SPDYE2Q495Y8 402 aa13.84□□□□□ -0.19
HMGN1-218ENST00000490032 SSUH2Q9Y2M2 353 aa13.71□□□□□ -0.21
HMGN1-218ENST00000490032 REM2Q8IYK8 340 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-218ENST00000490032 ZNF692Q9BU19 519 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-218ENST00000490032 CHRDL2Q6WN34 429 aa13.61□□□□□ -0.23
HMGN1-218ENST00000490032 PITPNM1O00562 1244 aa13.55□□□□□ -0.24
HMGN1-218ENST00000490032 SPDYE4A6NLX3 237 aa13.52□□□□□ -0.25
HMGN1-218ENST00000490032 POTEHQ6S545 545 aa13.52□□□□□ -0.25
HMGN1-218ENST00000490032 PABPN1Q86U42 306 aaKnown RBP eCLIP13.52□□□□□ -0.25
HMGN1-218ENST00000490032 SPDYE1Q8NFV5 336 aaPredicted RBP13.48□□□□□ -0.25
HMGN1-218ENST00000490032 CLEC11AQ9Y240 323 aa13.39□□□□□ -0.27
HMGN1-218ENST00000490032 FXR2P51116 673 aaKnown RBP eCLIP13.38□□□□□ -0.27
HMGN1-218ENST00000490032 PIP4P2Q8N4L2 257 aa13.37□□□□□ -0.27
HMGN1-218ENST00000490032 PROM2Q8N271 834 aa13.33□□□□□ -0.28
HMGN1-218ENST00000490032 PRR29P0C7W0 189 aa13.25□□□□□ -0.29
HMGN1-218ENST00000490032 STAG3Q9UJ98 1225 aa13.25□□□□□ -0.29
HMGN1-218ENST00000490032 FKBP8Q14318 412 aa13.23□□□□□ -0.29
HMGN1-218ENST00000490032 PRKAR2AP13861 404 aaKnown RBP13.19□□□□□ -0.3
HMGN1-218ENST00000490032 CHADLQ6NUI6 762 aa13.11□□□□□ -0.31
HMGN1-218ENST00000490032 CREBZFQ9NS37 354 aa13.05□□□□□ -0.32
HMGN1-218ENST00000490032 FARP1Q9Y4F1 1045 aaPredicted RBP12.99□□□□□ -0.33
HMGN1-218ENST00000490032 HAX1O00165 279 aa12.98□□□□□ -0.33
HMGN1-218ENST00000490032 C19orf67A6NJJ6 358 aa12.94□□□□□ -0.34
HMGN1-218ENST00000490032 MNX1P50219 401 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-218ENST00000490032 EVX2Q03828 476 aa12.88□□□□□ -0.35
HMGN1-218ENST00000490032 FBXO3Q9UK99 471 aa12.87□□□□□ -0.35
HMGN1-218ENST00000490032 SP7Q8TDD2 431 aaPredicted RBP12.86□□□□□ -0.35
HMGN1-218ENST00000490032 MIER1Q8N108 512 aa12.83□□□□□ -0.36
HMGN1-218ENST00000490032 NPM1P06748 294 aaKnown RBP eCLIP12.81□□□□□ -0.36
HMGN1-218ENST00000490032 PLEKHG5O94827 1062 aa12.79□□□□□ -0.36
HMGN1-218ENST00000490032 CD44P16070 742 aaKnown RBP12.79□□□□□ -0.36
HMGN1-218ENST00000490032 PLCD3Q8N3E9 789 aa12.77□□□□□ -0.37
HMGN1-218ENST00000490032 VASPP50552 380 aaPredicted RBP12.7□□□□□ -0.38
HMGN1-218ENST00000490032 ZBTB47Q9UFB7 747 aaPredicted RBP12.69□□□□□ -0.38
HMGN1-218ENST00000490032 ZRANB1Q9UGI0 708 aa12.67□□□□□ -0.38
HMGN1-218ENST00000490032 PAK3O75914 559 aaPredicted RBP12.65□□□□□ -0.38
HMGN1-218ENST00000490032 ZNF579Q8NAF0 562 aaKnown RBP12.65□□□□□ -0.38
HMGN1-218ENST00000490032 GABBR2O75899 941 aa12.63□□□□□ -0.39
HMGN1-218ENST00000490032 CLCN6P51797 869 aa12.61□□□□□ -0.39
HMGN1-218ENST00000490032 NUBP1P53384 320 aa12.59□□□□□ -0.39
HMGN1-218ENST00000490032 RASEFQ8IZ41 740 aa12.58□□□□□ -0.4
HMGN1-218ENST00000490032 TSPYL2Q9H2G4 693 aaPredicted RBP12.55□□□□□ -0.4
HMGN1-218ENST00000490032 CCDC61Q9Y6R9 512 aa12.53□□□□□ -0.4
HMGN1-218ENST00000490032 PHF12Q96QT6 1004 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms