RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 CCDC34Q96HJ3 373 aa11.01□□□□□ -0.65
SYNE1-224ENST00000478916 STK31Q9BXU1 1019 aa11.01□□□□□ -0.65
SYNE1-224ENST00000478916 CCER2I3L3R5 266 aa11□□□□□ -0.65
SYNE1-224ENST00000478916 PTPRGP23470 1445 aa11□□□□□ -0.65
SYNE1-224ENST00000478916 GPS2Q13227 327 aa11□□□□□ -0.65
SYNE1-224ENST00000478916 RAB3GAP2Q9H2M9 1393 aa10.99□□□□□ -0.65
SYNE1-224ENST00000478916 SMARCA4P51532 1647 aa10.99□□□□□ -0.65
SYNE1-224ENST00000478916 TPM3P06753 285 aa10.99□□□□□ -0.65
SYNE1-224ENST00000478916 AMPHP49418 695 aa10.98□□□□□ -0.65
SYNE1-224ENST00000478916 LMOD3Q0VAK6 560 aa10.98□□□□□ -0.65
SYNE1-224ENST00000478916 PRM3Q9NNZ6 103 aa10.97□□□□□ -0.65
SYNE1-224ENST00000478916 CYB5RLQ6IPT4 315 aa10.96□□□□□ -0.65
SYNE1-224ENST00000478916 TAF7LQ5H9L4 462 aa10.96□□□□□ -0.65
SYNE1-224ENST00000478916 NUTM2DQ5VT03 806 aaPredicted RBP10.96□□□□□ -0.65
SYNE1-224ENST00000478916 GPATCH3Q96I76 525 aa10.96□□□□□ -0.65
SYNE1-224ENST00000478916 GORABQ5T7V8 394 aa10.96□□□□□ -0.66
SYNE1-224ENST00000478916 DDX11L8A8MPP1 907 aa10.95□□□□□ -0.66
SYNE1-224ENST00000478916 CCDC144AA2RUR9 1427 aa10.95□□□□□ -0.66
SYNE1-224ENST00000478916 TEX35Q5T0J7 233 aa10.95□□□□□ -0.66
SYNE1-224ENST00000478916 RWDD1Q9H446 243 aaPredicted RBP10.95□□□□□ -0.66
SYNE1-224ENST00000478916 G3V3G9 751 aa10.95□□□□□ -0.66
SYNE1-224ENST00000478916 DCAF8Q5TAQ9 597 aa10.95□□□□□ -0.66
SYNE1-224ENST00000478916 ITPRIPQ8IWB1 547 aa10.95□□□□□ -0.66
SYNE1-224ENST00000478916 CEP89Q96ST8 783 aa10.94□□□□□ -0.66
SYNE1-224ENST00000478916 TSHZ2Q9NRE2 1034 aa10.94□□□□□ -0.66
SYNE1-224ENST00000478916 CHMP3Q9Y3E7 222 aa10.94□□□□□ -0.66
SYNE1-224ENST00000478916 HSP90B1P14625 803 aaKnown RBP10.94□□□□□ -0.66
SYNE1-224ENST00000478916 VGFO15240 615 aaPredicted RBP10.93□□□□□ -0.66
SYNE1-224ENST00000478916 APBB1O00213 710 aa10.93□□□□□ -0.66
SYNE1-224ENST00000478916 CCDC70Q6NSX1 233 aa10.93□□□□□ -0.66
SYNE1-224ENST00000478916 HMMRO75330 724 aa10.93□□□□□ -0.66
SYNE1-224ENST00000478916 PMFBP1Q8TBY8 1022 aa10.93□□□□□ -0.66
SYNE1-224ENST00000478916 AEBP2Q6ZN18 517 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-224ENST00000478916 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.92□□□□□ -0.66
SYNE1-224ENST00000478916 NOM1Q5C9Z4 860 aaKnown RBP10.92□□□□□ -0.66
SYNE1-224ENST00000478916 PATL2C9JE40 543 aaKnown RBP10.91□□□□□ -0.66
SYNE1-224ENST00000478916 MFAP1P55081 439 aaKnown RBP10.91□□□□□ -0.66
SYNE1-224ENST00000478916 PDE4CQ08493 712 aa10.91□□□□□ -0.66
SYNE1-224ENST00000478916 RCAN3Q9UKA8 241 aa10.91□□□□□ -0.66
SYNE1-224ENST00000478916 GTF2E1P29083 439 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-224ENST00000478916 GSE1Q14687 1217 aa10.91□□□□□ -0.66
SYNE1-224ENST00000478916 LTV1Q96GA3 475 aaPredicted RBP10.9□□□□□ -0.66
SYNE1-224ENST00000478916 TRAK1Q9UPV9 953 aa10.9□□□□□ -0.66
SYNE1-224ENST00000478916 PHLDB1Q86UU1 1377 aa10.9□□□□□ -0.66
SYNE1-224ENST00000478916 EVA1CP58658 441 aa10.9□□□□□ -0.66
SYNE1-224ENST00000478916 SMC4Q9NTJ3 1288 aa10.9□□□□□ -0.66
SYNE1-224ENST00000478916 SKOR2Q2VWA4 1001 aaPredicted RBP10.9□□□□□ -0.67
SYNE1-224ENST00000478916 RRP12Q5JTH9 1297 aaKnown RBP10.9□□□□□ -0.67
SYNE1-224ENST00000478916 CCAR2Q8N163 923 aaKnown RBP10.9□□□□□ -0.67
SYNE1-224ENST00000478916 GAPVD1Q14C86 1478 aa10.9□□□□□ -0.67
SYNE1-224ENST00000478916 NUTM2FA1L443 756 aa10.89□□□□□ -0.67
SYNE1-224ENST00000478916 TSR1Q2NL82 804 aaKnown RBP10.89□□□□□ -0.67
SYNE1-224ENST00000478916 EVC2Q86UK5 1308 aa10.89□□□□□ -0.67
SYNE1-224ENST00000478916 CREBRFQ8IUR6 639 aa10.89□□□□□ -0.67
SYNE1-224ENST00000478916 COG3Q96JB2 828 aa10.89□□□□□ -0.67
SYNE1-224ENST00000478916 APPP05067 770 aa10.89□□□□□ -0.67
SYNE1-224ENST00000478916 C1orf141Q5JVX7 400 aa10.89□□□□□ -0.67
SYNE1-224ENST00000478916 L3MBTL2Q969R5 705 aa10.89□□□□□ -0.67
SYNE1-224ENST00000478916 GOLGA6L19H0YKK7 550 aa10.88□□□□□ -0.67
SYNE1-224ENST00000478916 ST18O60284 1047 aa10.88□□□□□ -0.67
SYNE1-224ENST00000478916 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.88□□□□□ -0.67
SYNE1-224ENST00000478916 MEX3CQ5U5Q3 659 aaKnown RBP10.87□□□□□ -0.67
SYNE1-224ENST00000478916 FAM69CQ0P6D2 419 aa10.87□□□□□ -0.67
SYNE1-224ENST00000478916 NLRP13Q86W25 1043 aa10.87□□□□□ -0.67
SYNE1-224ENST00000478916 RASSF8Q8NHQ8 419 aa10.87□□□□□ -0.67
SYNE1-224ENST00000478916 CGNL1Q0VF96 1302 aa10.87□□□□□ -0.67
SYNE1-224ENST00000478916 TPM1P09493 284 aa10.86□□□□□ -0.67
SYNE1-224ENST00000478916 KIF16BQ96L93 1317 aa10.86□□□□□ -0.67
SYNE1-224ENST00000478916 SLC4A10Q6U841 1118 aa10.86□□□□□ -0.67
SYNE1-224ENST00000478916 FAM13BQ9NYF5 915 aa10.86□□□□□ -0.67
SYNE1-224ENST00000478916 FRAT2O75474 233 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-224ENST00000478916 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-224ENST00000478916 KIF3AQ9Y496 699 aa10.86□□□□□ -0.67
SYNE1-224ENST00000478916 KIF15Q9NS87 1388 aa10.86□□□□□ -0.67
SYNE1-224ENST00000478916 TPD52L1Q16890 204 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-224ENST00000478916 FGD5Q6ZNL6 1462 aa10.85□□□□□ -0.67
SYNE1-224ENST00000478916 FOXD4L1Q9NU39 408 aa10.85□□□□□ -0.67
SYNE1-224ENST00000478916 SF3A1Q15459 793 aaKnown RBP10.84□□□□□ -0.67
SYNE1-224ENST00000478916 CENPJQ9HC77 1338 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-224ENST00000478916 TRIM6-TRIM34B2RNG4 842 aa10.84□□□□□ -0.67
SYNE1-224ENST00000478916 DDX49Q9Y6V7 483 aaKnown RBP10.84□□□□□ -0.67
SYNE1-224ENST00000478916 ZNF592Q92610 1267 aa10.84□□□□□ -0.67
SYNE1-224ENST00000478916 TPM2P07951 284 aa10.83□□□□□ -0.68
SYNE1-224ENST00000478916 TTC5Q8N0Z6 440 aa10.83□□□□□ -0.68
SYNE1-224ENST00000478916 BECN2A8MW95 431 aa10.83□□□□□ -0.68
SYNE1-224ENST00000478916 PES1O00541 588 aaKnown RBP10.83□□□□□ -0.68
SYNE1-224ENST00000478916 CCDC146Q8IYE0 955 aa10.83□□□□□ -0.68
SYNE1-224ENST00000478916 MTERF4Q7Z6M4 381 aaKnown RBP10.82□□□□□ -0.68
SYNE1-224ENST00000478916 PDE3BQ13370 1112 aa10.82□□□□□ -0.68
SYNE1-224ENST00000478916 ATP6V1DQ9Y5K8 247 aa10.82□□□□□ -0.68
SYNE1-224ENST00000478916 PSME1Q06323 249 aa10.82□□□□□ -0.68
SYNE1-224ENST00000478916 TEFQ10587 303 aa10.81□□□□□ -0.68
SYNE1-224ENST00000478916 AK7Q96M32 723 aa10.81□□□□□ -0.68
SYNE1-224ENST00000478916 MAP7D2Q96T17 732 aa10.81□□□□□ -0.68
SYNE1-224ENST00000478916 ACBD3Q9H3P7 528 aa10.81□□□□□ -0.68
SYNE1-224ENST00000478916 MYOM3Q5VTT5 1437 aa10.81□□□□□ -0.68
SYNE1-224ENST00000478916 MSH5O43196 834 aa10.81□□□□□ -0.68
SYNE1-224ENST00000478916 CUX1P39880 1505 aa10.81□□□□□ -0.68
SYNE1-224ENST00000478916 CWC15Q9P013 229 aaKnown RBP10.81□□□□□ -0.68
SYNE1-224ENST00000478916 CDR1P51861 262 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms