RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 FANCIQ9NVI1 1328 aa24.61■■□□□ 1.53
CCM2-209ENST00000477605 IRX6P78412 446 aaPredicted RBP24.61■■□□□ 1.53
CCM2-209ENST00000477605 KTN1Q86UP2 1357 aaKnown RBP24.61■■□□□ 1.53
CCM2-209ENST00000477605 KIF15Q9NS87 1388 aa24.61■■□□□ 1.53
CCM2-209ENST00000477605 ZCCHC11Q5TAX3 1644 aaKnown RBP24.59■■□□□ 1.53
CCM2-209ENST00000477605 ZNF326Q5BKZ1 582 aaKnown RBP24.58■■□□□ 1.53
CCM2-209ENST00000477605 CARD11Q9BXL7 1154 aa24.57■■□□□ 1.52
CCM2-209ENST00000477605 CCDC141Q6ZP82 1450 aa24.56■■□□□ 1.52
CCM2-209ENST00000477605 HNRNPMP52272 730 aaKnown RBP eCLIP24.52■■□□□ 1.52
CCM2-209ENST00000477605 NUDCQ9Y266 331 aa24.52■■□□□ 1.52
CCM2-209ENST00000477605 RNF123Q5XPI4 1314 aa24.51■■□□□ 1.51
CCM2-209ENST00000477605 PNISRQ8TF01 805 aaKnown RBP24.5■■□□□ 1.51
CCM2-209ENST00000477605 GLI2P10070 1586 aa24.5■■□□□ 1.51
CCM2-209ENST00000477605 RALBP1Q15311 655 aa24.49■■□□□ 1.51
CCM2-209ENST00000477605 PREX2Q70Z35 1606 aa24.49■■□□□ 1.51
CCM2-209ENST00000477605 FAM135AQ9P2D6 1515 aa24.48■■□□□ 1.51
CCM2-209ENST00000477605 SAMD9LQ8IVG5 1584 aa24.48■■□□□ 1.51
CCM2-209ENST00000477605 MAST1Q9Y2H9 1570 aa24.48■■□□□ 1.51
CCM2-209ENST00000477605 BRD4O60885 1362 aaPredicted RBP24.48■■□□□ 1.51
CCM2-209ENST00000477605 TSPOAP1O95153 1857 aa24.48■■□□□ 1.51
CCM2-209ENST00000477605 POLR3GLQ9BT43 218 aa24.47■■□□□ 1.51
CCM2-209ENST00000477605 TMC1Q8TDI8 760 aa24.46■■□□□ 1.51
CCM2-209ENST00000477605 DCAF11Q8TEB1 546 aa24.46■■□□□ 1.51
CCM2-209ENST00000477605 WDR7Q9Y4E6 1490 aa24.46■■□□□ 1.51
CCM2-209ENST00000477605 ST20-MTHFSA0A0A6YYL1 179 aa24.45■■□□□ 1.5
CCM2-209ENST00000477605 LRPPRCP42704 1394 aaKnown RBP24.44■■□□□ 1.5
CCM2-209ENST00000477605 MYBBP1AQ9BQG0 1328 aaKnown RBP24.44■■□□□ 1.5
CCM2-209ENST00000477605 CDC42BPBQ9Y5S2 1711 aa24.42■■□□□ 1.5
CCM2-209ENST00000477605 PLEKHH2Q8IVE3 1493 aa24.42■■□□□ 1.5
CCM2-209ENST00000477605 CCDC144AA2RUR9 1427 aa24.42■■□□□ 1.5
CCM2-209ENST00000477605 KDM2AQ9Y2K7 1162 aa24.41■■□□□ 1.5
CCM2-209ENST00000477605 PRAG1Q86YV5 1406 aa24.41■■□□□ 1.5
CCM2-209ENST00000477605 UNC13BO14795 1591 aa24.41■■□□□ 1.5
CCM2-209ENST00000477605 GPRASP1Q5JY77 1395 aa24.4■■□□□ 1.5
CCM2-209ENST00000477605 B4GALNT3Q6L9W6 998 aa24.39■■□□□ 1.5
CCM2-209ENST00000477605 PPRC1Q5VV67 1664 aaKnown RBP24.39■■□□□ 1.5
CCM2-209ENST00000477605 E9PCH4 1651 aa24.38■■□□□ 1.49
CCM2-209ENST00000477605 MSH5O43196 834 aa24.38■■□□□ 1.49
CCM2-209ENST00000477605 MAP3K4Q9Y6R4 1608 aa24.38■■□□□ 1.49
CCM2-209ENST00000477605 LAMC1P11047 1609 aa24.36■■□□□ 1.49
CCM2-209ENST00000477605 TRPM1Q7Z4N2 1603 aa24.36■■□□□ 1.49
CCM2-209ENST00000477605 WASHC2CQ9Y4E1 1318 aa24.35■■□□□ 1.49
CCM2-209ENST00000477605 PLXNC1O60486 1568 aa24.35■■□□□ 1.49
CCM2-209ENST00000477605 ATP10AO60312 1499 aa24.34■■□□□ 1.49
CCM2-209ENST00000477605 SYCP2Q9BX26 1530 aa24.34■■□□□ 1.49
CCM2-209ENST00000477605 ARHGAP5Q13017 1502 aa24.33■■□□□ 1.48
CCM2-209ENST00000477605 PLA2R1Q13018 1463 aa24.32■■□□□ 1.48
CCM2-209ENST00000477605 INSRP06213 1382 aa24.31■■□□□ 1.48
CCM2-209ENST00000477605 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.31■■□□□ 1.48
CCM2-209ENST00000477605 IQGAP3Q86VI3 1631 aa24.31■■□□□ 1.48
CCM2-209ENST00000477605 NLRP13Q86W25 1043 aa24.31■■□□□ 1.48
CCM2-209ENST00000477605 PARD3Q8TEW0 1356 aa24.31■■□□□ 1.48
CCM2-209ENST00000477605 DUOX2Q9NRD8 1548 aa24.29■■□□□ 1.48
CCM2-209ENST00000477605 EIF2AK4Q9P2K8 1649 aaKnown RBP24.28■■□□□ 1.48
CCM2-209ENST00000477605 TTC37Q6PGP7 1564 aa24.28■■□□□ 1.48
CCM2-209ENST00000477605 A2MP01023 1474 aa24.28■■□□□ 1.48
CCM2-209ENST00000477605 MAGI2Q86UL8 1455 aa24.28■■□□□ 1.48
CCM2-209ENST00000477605 PDE3BQ13370 1112 aa24.28■■□□□ 1.48
CCM2-209ENST00000477605 ERBINQ96RT1 1412 aa24.27■■□□□ 1.48
CCM2-209ENST00000477605 CNGB1Q14028 1251 aaPredicted RBP24.27■■□□□ 1.48
CCM2-209ENST00000477605 CD109Q6YHK3 1445 aa24.27■■□□□ 1.48
CCM2-209ENST00000477605 PRDM15P57071 1507 aaPredicted RBP24.26■■□□□ 1.47
CCM2-209ENST00000477605 ZMYM4Q5VZL5 1548 aa24.26■■□□□ 1.47
CCM2-209ENST00000477605 COL17A1Q9UMD9 1497 aaPredicted RBP24.26■■□□□ 1.47
CCM2-209ENST00000477605 ERICH6Q7L0X2 663 aa24.25■■□□□ 1.47
CCM2-209ENST00000477605 PER1O15534 1290 aaPredicted RBP24.25■■□□□ 1.47
CCM2-209ENST00000477605 CCDC136Q96JN2 1154 aa24.25■■□□□ 1.47
CCM2-209ENST00000477605 MYO5CQ9NQX4 1742 aa24.23■■□□□ 1.47
CCM2-209ENST00000477605 PLCH2O75038 1416 aa24.21■■□□□ 1.47
CCM2-209ENST00000477605 NBPF1Q3BBV0 1214 aa24.2■■□□□ 1.47
CCM2-209ENST00000477605 TESK2Q96S53 571 aa24.2■■□□□ 1.46
CCM2-209ENST00000477605 RGL3Q3MIN7 710 aa24.19■■□□□ 1.46
CCM2-209ENST00000477605 ABCA9Q8IUA7 1624 aa24.18■■□□□ 1.46
CCM2-209ENST00000477605 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.18■■□□□ 1.46
CCM2-209ENST00000477605 STAC3Q96MF2 364 aa24.17■■□□□ 1.46
CCM2-209ENST00000477605 TMF1P82094 1093 aa24.17■■□□□ 1.46
CCM2-209ENST00000477605 EFCAB2Q5VUJ9 269 aa24.17■■□□□ 1.46
CCM2-209ENST00000477605 MYT1LQ9UL68 1186 aa24.17■■□□□ 1.46
CCM2-209ENST00000477605 RRP1P56182 461 aaKnown RBP24.15■■□□□ 1.46
CCM2-209ENST00000477605 DISP3Q9P2K9 1392 aa24.12■■□□□ 1.45
CCM2-209ENST00000477605 RCAN3Q9UKA8 241 aa24.12■■□□□ 1.45
CCM2-209ENST00000477605 RTEL1-TNFRSF6BF6WH68 1400 aa24.1■■□□□ 1.45
CCM2-209ENST00000477605 BLMP54132 1417 aaPredicted RBP24.1■■□□□ 1.45
CCM2-209ENST00000477605 RNF17Q9BXT8 1623 aaKnown RBP24.1■■□□□ 1.45
CCM2-209ENST00000477605 ABCC1P33527 1531 aa24.09■■□□□ 1.45
CCM2-209ENST00000477605 PANK3Q9H999 370 aa24.08■■□□□ 1.45
CCM2-209ENST00000477605 ARAP3Q8WWN8 1544 aa24.08■■□□□ 1.45
CCM2-209ENST00000477605 CDCA8Q53HL2 280 aa24.03■■□□□ 1.44
CCM2-209ENST00000477605 NOP58Q9Y2X3 529 aaKnown RBP24.03■■□□□ 1.44
CCM2-209ENST00000477605 PTPRTO14522 1441 aa24.03■■□□□ 1.44
CCM2-209ENST00000477605 SCAPERQ9BY12 1400 aa24.03■■□□□ 1.44
CCM2-209ENST00000477605 TRAPPC8Q9Y2L5 1435 aa24.02■■□□□ 1.44
CCM2-209ENST00000477605 TRPM2O94759 1503 aa24.02■■□□□ 1.44
CCM2-209ENST00000477605 CC2D1BQ5T0F9 858 aaKnown RBP24.01■■□□□ 1.43
CCM2-209ENST00000477605 NEO1Q92859 1461 aa24■■□□□ 1.43
CCM2-209ENST00000477605 TCERG1O14776 1098 aaKnown RBP24■■□□□ 1.43
CCM2-209ENST00000477605 ANP32AP39687 249 aaKnown RBP24■■□□□ 1.43
CCM2-209ENST00000477605 SPAG9O60271 1321 aaKnown RBP23.99■■□□□ 1.43
CCM2-209ENST00000477605 MADDQ8WXG6 1647 aa23.99■■□□□ 1.43
CCM2-209ENST00000477605 AEBP2Q6ZN18 517 aaPredicted RBP23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms