RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 FBXW7Q969H0 707 aa12.33□□□□□ -0.44
VPS50-213ENST00000477572 TK2O00142 265 aa12.32□□□□□ -0.44
VPS50-213ENST00000477572 COL9A1P20849 921 aa12.32□□□□□ -0.44
VPS50-213ENST00000477572 EPAS1Q99814 870 aa12.32□□□□□ -0.44
VPS50-213ENST00000477572 VPS9D1Q9Y2B5 631 aa12.32□□□□□ -0.44
VPS50-213ENST00000477572 C6orf132Q5T0Z8 1188 aa12.29□□□□□ -0.44
VPS50-213ENST00000477572 ZBED2Q9BTP6 218 aa12.29□□□□□ -0.44
VPS50-213ENST00000477572 MAP3K7O43318 606 aa12.28□□□□□ -0.44
VPS50-213ENST00000477572 HRO43593 1189 aa12.28□□□□□ -0.44
VPS50-213ENST00000477572 PRIM1P49642 420 aaKnown RBP12.28□□□□□ -0.44
VPS50-213ENST00000477572 TSR1Q2NL82 804 aaKnown RBP12.27□□□□□ -0.45
VPS50-213ENST00000477572 PROX2Q3B8N5 592 aa12.27□□□□□ -0.45
VPS50-213ENST00000477572 ARHGEF1Q92888 912 aaKnown RBP12.27□□□□□ -0.45
VPS50-213ENST00000477572 STAC3Q96MF2 364 aa12.27□□□□□ -0.45
VPS50-213ENST00000477572 PPP1R3GB7ZBB8 358 aa12.26□□□□□ -0.45
VPS50-213ENST00000477572 KDM2AQ9Y2K7 1162 aa12.26□□□□□ -0.45
VPS50-213ENST00000477572 EN1Q05925 392 aaPredicted RBP12.24□□□□□ -0.45
VPS50-213ENST00000477572 MLLT3P42568 568 aaPredicted RBP12.23□□□□□ -0.45
VPS50-213ENST00000477572 SLC4A5Q9BY07 1137 aa12.23□□□□□ -0.45
VPS50-213ENST00000477572 OSBPP22059 807 aa12.22□□□□□ -0.45
VPS50-213ENST00000477572 P3H3Q8IVL6 736 aa12.21□□□□□ -0.45
VPS50-213ENST00000477572 KCTD12Q96CX2 325 aaKnown RBP12.2□□□□□ -0.46
VPS50-213ENST00000477572 BHMG1C9JSJ3 638 aaPredicted RBP12.18□□□□□ -0.46
VPS50-213ENST00000477572 CDHR5Q9HBB8 845 aa12.18□□□□□ -0.46
VPS50-213ENST00000477572 SEMA3EO15041 775 aa12.17□□□□□ -0.46
VPS50-213ENST00000477572 KIAA1468Q9P260 1216 aa12.17□□□□□ -0.46
VPS50-213ENST00000477572 MRPL50Q8N5N7 158 aaKnown RBP12.16□□□□□ -0.46
VPS50-213ENST00000477572 GOLGA8CPA6NN73 597 aa12.14□□□□□ -0.47
VPS50-213ENST00000477572 NBPF3Q9H094 633 aa12.14□□□□□ -0.47
VPS50-213ENST00000477572 RABGEF1Q9UJ41 708 aa12.14□□□□□ -0.47
VPS50-213ENST00000477572 SEPT9Q9UHD8 586 aaPredicted RBP12.13□□□□□ -0.47
VPS50-213ENST00000477572 TRIM6-TRIM34B2RNG4 842 aa12.12□□□□□ -0.47
VPS50-213ENST00000477572 TSKSQ9UJT2 592 aa12.11□□□□□ -0.47
VPS50-213ENST00000477572 VSIG10Q8N0Z9 540 aa12.1□□□□□ -0.47
VPS50-213ENST00000477572 PTPN5P54829 565 aa12.09□□□□□ -0.47
VPS50-213ENST00000477572 WNT2BQ93097 391 aa12.09□□□□□ -0.47
VPS50-213ENST00000477572 CDCA7LQ96GN5 454 aa12.09□□□□□ -0.47
VPS50-213ENST00000477572 PRSS12P56730 875 aa12.08□□□□□ -0.48
VPS50-213ENST00000477572 FAM198AQ9UFP1 575 aa12.08□□□□□ -0.48
VPS50-213ENST00000477572 SMAPO00193 183 aa12.07□□□□□ -0.48
VPS50-213ENST00000477572 HCSTQ9UBK5 93 aa12.07□□□□□ -0.48
VPS50-213ENST00000477572 C3orf80F5H4A9 247 aa12.05□□□□□ -0.48
VPS50-213ENST00000477572 PACS2Q86VP3 889 aa12.05□□□□□ -0.48
VPS50-213ENST00000477572 NPDC1Q9NQX5 325 aaPredicted RBP12.05□□□□□ -0.48
VPS50-213ENST00000477572 NUTM2FA1L443 756 aa12.04□□□□□ -0.48
VPS50-213ENST00000477572 ONECUT3O60422 494 aaPredicted RBP12.04□□□□□ -0.48
VPS50-213ENST00000477572 THSD4Q6ZMP0 1018 aa12.04□□□□□ -0.48
VPS50-213ENST00000477572 CERKQ8TCT0 537 aa12.04□□□□□ -0.48
VPS50-213ENST00000477572 BCAMP50895 628 aa12.02□□□□□ -0.49
VPS50-213ENST00000477572 ZFRQ96KR1 1074 aaKnown RBP12.02□□□□□ -0.49
VPS50-213ENST00000477572 TESPA1A2RU30 521 aaPredicted RBP12.01□□□□□ -0.49
VPS50-213ENST00000477572 PADI6Q6TGC4 694 aa12.01□□□□□ -0.49
VPS50-213ENST00000477572 LAPTM4BQ86VI4 370 aa12.01□□□□□ -0.49
VPS50-213ENST00000477572 ANKK1Q8NFD2 765 aa12.01□□□□□ -0.49
VPS50-213ENST00000477572 FAM98CQ17RN3 349 aaKnown RBP11.99□□□□□ -0.49
VPS50-213ENST00000477572 RBM26Q5T8P6 1007 aaKnown RBP11.99□□□□□ -0.49
VPS50-213ENST00000477572 PNMA3Q9UL41 463 aa11.99□□□□□ -0.49
VPS50-213ENST00000477572 TATDN2Q93075 761 aa11.98□□□□□ -0.49
VPS50-213ENST00000477572 NUDT18Q6ZVK8 323 aa11.97□□□□□ -0.49
VPS50-213ENST00000477572 PTGDRQ13258 359 aa11.96□□□□□ -0.49
VPS50-213ENST00000477572 NBPF26B4DH59 902 aa11.95□□□□□ -0.5
VPS50-213ENST00000477572 SOWAHBA6NEL2 793 aa11.94□□□□□ -0.5
VPS50-213ENST00000477572 SMYD5Q6GMV2 418 aa11.93□□□□□ -0.5
VPS50-213ENST00000477572 TTC13Q8NBP0 860 aa11.93□□□□□ -0.5
VPS50-213ENST00000477572 RBM27Q9P2N5 1060 aaKnown RBP11.93□□□□□ -0.5
VPS50-213ENST00000477572 FAM161AQ3B820 660 aa11.92□□□□□ -0.5
VPS50-213ENST00000477572 SAMD7Q7Z3H4 446 aa11.92□□□□□ -0.5
VPS50-213ENST00000477572 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.92□□□□□ -0.5
VPS50-213ENST00000477572 PLA2G2EQ9NZK7 142 aa11.92□□□□□ -0.5
VPS50-213ENST00000477572 LRCH3Q96II8 777 aa11.91□□□□□ -0.5
VPS50-213ENST00000477572 WBP1LQ9NX94 342 aa11.91□□□□□ -0.5
VPS50-213ENST00000477572 FCHSD2O94868 740 aa11.9□□□□□ -0.5
VPS50-213ENST00000477572 HPS5Q9UPZ3 1129 aa11.89□□□□□ -0.51
VPS50-213ENST00000477572 RNF40O75150 1001 aa11.86□□□□□ -0.51
VPS50-213ENST00000477572 EYA1Q99502 592 aa11.85□□□□□ -0.51
VPS50-213ENST00000477572 TSR3Q9UJK0 312 aaKnown RBP11.85□□□□□ -0.51
VPS50-213ENST00000477572 ADGRG1Q9Y653 693 aa11.84□□□□□ -0.51
VPS50-213ENST00000477572 FECHP22830 423 aa11.83□□□□□ -0.52
VPS50-213ENST00000477572 SWT1Q5T5J6 900 aaKnown RBP11.83□□□□□ -0.52
VPS50-213ENST00000477572 HDGFP51858 240 aaKnown RBP11.82□□□□□ -0.52
VPS50-213ENST00000477572 PPP4CP60510 307 aa11.82□□□□□ -0.52
VPS50-213ENST00000477572 GPR37O15354 613 aa11.81□□□□□ -0.52
VPS50-213ENST00000477572 HIC1Q14526 733 aa11.81□□□□□ -0.52
VPS50-213ENST00000477572 GPIHBP1Q8IV16 184 aa11.8□□□□□ -0.52
VPS50-213ENST00000477572 RBM46Q8TBY0 533 aaKnown RBP11.79□□□□□ -0.52
VPS50-213ENST00000477572 GNPATO15228 680 aa11.78□□□□□ -0.52
VPS50-213ENST00000477572 TULP1O00294 542 aaPredicted RBP11.77□□□□□ -0.53
VPS50-213ENST00000477572 RCCD1A6NED2 376 aa11.76□□□□□ -0.53
VPS50-213ENST00000477572 DNAJB2P25686 324 aa11.74□□□□□ -0.53
VPS50-213ENST00000477572 NYAP1Q6ZVC0 841 aa11.74□□□□□ -0.53
VPS50-213ENST00000477572 NLRP7Q8WX94 980 aa11.73□□□□□ -0.53
VPS50-213ENST00000477572 SLF2Q8IX21 1173 aa11.72□□□□□ -0.53
VPS50-213ENST00000477572 PXYLP1Q8TE99 480 aa11.72□□□□□ -0.53
VPS50-213ENST00000477572 TMEM134Q9H6X4 195 aa11.72□□□□□ -0.53
VPS50-213ENST00000477572 OATP04181 439 aa11.71□□□□□ -0.53
VPS50-213ENST00000477572 APLP1P51693 650 aa11.71□□□□□ -0.53
VPS50-213ENST00000477572 METTL3Q86U44 580 aaKnown RBP11.71□□□□□ -0.53
VPS50-213ENST00000477572 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.69□□□□□ -0.54
VPS50-213ENST00000477572 SLC4A3P48751 1232 aa11.68□□□□□ -0.54
VPS50-213ENST00000477572 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms