RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 ERICH6BQ5W0A0 696 aa11.4□□□□□ -0.58
VAPB-205ENST00000476395 MRS2Q9HD23 443 aa11.4□□□□□ -0.58
VAPB-205ENST00000476395 RTL5Q5HYW3 569 aaPredicted RBP11.39□□□□□ -0.59
VAPB-205ENST00000476395 ATP10BO94823 1461 aa11.39□□□□□ -0.59
VAPB-205ENST00000476395 LAS1LQ9Y4W2 734 aaKnown RBP11.39□□□□□ -0.59
VAPB-205ENST00000476395 SAMD9LQ8IVG5 1584 aa11.39□□□□□ -0.59
VAPB-205ENST00000476395 ARHGEF5Q12774 1597 aa11.38□□□□□ -0.59
VAPB-205ENST00000476395 ANKRD50Q9ULJ7 1429 aa11.38□□□□□ -0.59
VAPB-205ENST00000476395 PDIA4P13667 645 aaKnown RBP11.37□□□□□ -0.59
VAPB-205ENST00000476395 LRPPRCP42704 1394 aaKnown RBP11.37□□□□□ -0.59
VAPB-205ENST00000476395 MYO5CQ9NQX4 1742 aa11.36□□□□□ -0.59
VAPB-205ENST00000476395 NPM2Q86SE8 214 aaKnown RBP11.36□□□□□ -0.59
VAPB-205ENST00000476395 BRPF3Q9ULD4 1205 aa11.36□□□□□ -0.59
VAPB-205ENST00000476395 PREX2Q70Z35 1606 aa11.36□□□□□ -0.59
VAPB-205ENST00000476395 PKD2Q13563 968 aa11.36□□□□□ -0.59
VAPB-205ENST00000476395 HOMEZQ8IX15 550 aa11.36□□□□□ -0.59
VAPB-205ENST00000476395 C9orf84Q5VXU9 1444 aa11.35□□□□□ -0.59
VAPB-205ENST00000476395 PNISRQ8TF01 805 aaKnown RBP11.35□□□□□ -0.59
VAPB-205ENST00000476395 CFDP1Q9UEE9 299 aaPredicted RBP11.35□□□□□ -0.59
VAPB-205ENST00000476395 PLA2R1Q13018 1463 aa11.35□□□□□ -0.59
VAPB-205ENST00000476395 CNGB1Q14028 1251 aaPredicted RBP11.34□□□□□ -0.59
VAPB-205ENST00000476395 IPO9Q96P70 1041 aaKnown RBP11.34□□□□□ -0.59
VAPB-205ENST00000476395 UNC13BO14795 1591 aa11.34□□□□□ -0.59
VAPB-205ENST00000476395 PDE4CQ08493 712 aa11.33□□□□□ -0.6
VAPB-205ENST00000476395 ZBTB47Q9UFB7 747 aaPredicted RBP11.33□□□□□ -0.6
VAPB-205ENST00000476395 FAM135AQ9P2D6 1515 aa11.33□□□□□ -0.6
VAPB-205ENST00000476395 ANKRD30AQ9BXX3 1397 aa11.32□□□□□ -0.6
VAPB-205ENST00000476395 LAMC1P11047 1609 aa11.32□□□□□ -0.6
VAPB-205ENST00000476395 ARID4BQ4LE39 1312 aaPredicted RBP11.31□□□□□ -0.6
VAPB-205ENST00000476395 TTC37Q6PGP7 1564 aa11.31□□□□□ -0.6
VAPB-205ENST00000476395 ANP32AP39687 249 aaKnown RBP11.31□□□□□ -0.6
VAPB-205ENST00000476395 NEFMP07197 916 aa11.3□□□□□ -0.6
VAPB-205ENST00000476395 MAST1Q9Y2H9 1570 aa11.3□□□□□ -0.6
VAPB-205ENST00000476395 PRDM15P57071 1507 aaPredicted RBP11.3□□□□□ -0.6
VAPB-205ENST00000476395 NUDCQ9Y266 331 aa11.29□□□□□ -0.6
VAPB-205ENST00000476395 PRAG1Q86YV5 1406 aa11.29□□□□□ -0.6
VAPB-205ENST00000476395 RNF17Q9BXT8 1623 aaKnown RBP11.29□□□□□ -0.6
VAPB-205ENST00000476395 NUP155O75694 1391 aa11.29□□□□□ -0.6
VAPB-205ENST00000476395 JPH4Q96JJ6 628 aa11.28□□□□□ -0.6
VAPB-205ENST00000476395 IQGAP3Q86VI3 1631 aa11.28□□□□□ -0.6
VAPB-205ENST00000476395 A2MP01023 1474 aa11.28□□□□□ -0.6
VAPB-205ENST00000476395 ZNF777Q9ULD5 760 aaPredicted RBP11.28□□□□□ -0.6
VAPB-205ENST00000476395 ST20-MTHFSA0A0A6YYL1 179 aa11.27□□□□□ -0.61
VAPB-205ENST00000476395 PARD3Q8TEW0 1356 aa11.27□□□□□ -0.61
VAPB-205ENST00000476395 KIF15Q9NS87 1388 aa11.27□□□□□ -0.61
VAPB-205ENST00000476395 SHROOM2Q13796 1616 aa11.27□□□□□ -0.61
VAPB-205ENST00000476395 MAGI2Q86UL8 1455 aa11.26□□□□□ -0.61
VAPB-205ENST00000476395 PER1O15534 1290 aaPredicted RBP11.26□□□□□ -0.61
VAPB-205ENST00000476395 PLXNC1O60486 1568 aa11.26□□□□□ -0.61
VAPB-205ENST00000476395 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.26□□□□□ -0.61
VAPB-205ENST00000476395 SYCP2Q9BX26 1530 aa11.26□□□□□ -0.61
VAPB-205ENST00000476395 GPRASP1Q5JY77 1395 aa11.26□□□□□ -0.61
VAPB-205ENST00000476395 CHD1O14646 1710 aa11.25□□□□□ -0.61
VAPB-205ENST00000476395 ROCK2O75116 1388 aaKnown RBP11.25□□□□□ -0.61
VAPB-205ENST00000476395 CCDC141Q6ZP82 1450 aa11.25□□□□□ -0.61
VAPB-205ENST00000476395 COL17A1Q9UMD9 1497 aaPredicted RBP11.25□□□□□ -0.61
VAPB-205ENST00000476395 CARMIL2Q6F5E8 1435 aa11.25□□□□□ -0.61
VAPB-205ENST00000476395 ZNF326Q5BKZ1 582 aaKnown RBP11.25□□□□□ -0.61
VAPB-205ENST00000476395 HNRNPMP52272 730 aaKnown RBP eCLIP11.24□□□□□ -0.61
VAPB-205ENST00000476395 SKAP1Q86WV1 359 aa11.24□□□□□ -0.61
VAPB-205ENST00000476395 ERCC6L2Q5T890 1561 aa11.24□□□□□ -0.61
VAPB-205ENST00000476395 BRD4O60885 1362 aaPredicted RBP11.23□□□□□ -0.61
VAPB-205ENST00000476395 AMER1Q5JTC6 1135 aaPredicted RBP11.23□□□□□ -0.61
VAPB-205ENST00000476395 DISP3Q9P2K9 1392 aa11.22□□□□□ -0.61
VAPB-205ENST00000476395 TESK2Q96S53 571 aa11.22□□□□□ -0.61
VAPB-205ENST00000476395 CARD11Q9BXL7 1154 aa11.22□□□□□ -0.61
VAPB-205ENST00000476395 IQGAP1P46940 1657 aa11.22□□□□□ -0.61
VAPB-205ENST00000476395 NBPF1Q3BBV0 1214 aa11.22□□□□□ -0.61
VAPB-205ENST00000476395 MYOM1P52179 1685 aa11.22□□□□□ -0.61
VAPB-205ENST00000476395 ATP10AO60312 1499 aa11.21□□□□□ -0.61
VAPB-205ENST00000476395 MYBBP1AQ9BQG0 1328 aaKnown RBP11.21□□□□□ -0.61
VAPB-205ENST00000476395 BLMP54132 1417 aaPredicted RBP11.21□□□□□ -0.61
VAPB-205ENST00000476395 DCAF11Q8TEB1 546 aa11.2□□□□□ -0.62
VAPB-205ENST00000476395 MADDQ8WXG6 1647 aa11.2□□□□□ -0.62
VAPB-205ENST00000476395 KTN1Q86UP2 1357 aaKnown RBP11.2□□□□□ -0.62
VAPB-205ENST00000476395 SLC4A3P48751 1232 aa11.2□□□□□ -0.62
VAPB-205ENST00000476395 ZMYM4Q5VZL5 1548 aa11.18□□□□□ -0.62
VAPB-205ENST00000476395 WASHC2CQ9Y4E1 1318 aa11.18□□□□□ -0.62
VAPB-205ENST00000476395 KDM2AQ9Y2K7 1162 aa11.18□□□□□ -0.62
VAPB-205ENST00000476395 PLEKHH2Q8IVE3 1493 aa11.18□□□□□ -0.62
VAPB-205ENST00000476395 PLEKHD1A6NEE1 506 aa11.18□□□□□ -0.62
VAPB-205ENST00000476395 KCNA4P22459 653 aa11.17□□□□□ -0.62
VAPB-205ENST00000476395 WDR7Q9Y4E6 1490 aa11.17□□□□□ -0.62
VAPB-205ENST00000476395 POLR3GLQ9BT43 218 aa11.17□□□□□ -0.62
VAPB-205ENST00000476395 SPHKAPQ2M3C7 1700 aa11.17□□□□□ -0.62
VAPB-205ENST00000476395 EIF2AK4Q9P2K8 1649 aaKnown RBP11.17□□□□□ -0.62
VAPB-205ENST00000476395 RRP1P56182 461 aaKnown RBP11.16□□□□□ -0.62
VAPB-205ENST00000476395 CEP152O94986 1710 aa11.16□□□□□ -0.62
VAPB-205ENST00000476395 ADRA2BP18089 450 aa11.16□□□□□ -0.62
VAPB-205ENST00000476395 RALBP1Q15311 655 aa11.16□□□□□ -0.62
VAPB-205ENST00000476395 CDCA7LQ96GN5 454 aa11.16□□□□□ -0.62
VAPB-205ENST00000476395 EXOC6Q8TAG9 804 aa11.15□□□□□ -0.62
VAPB-205ENST00000476395 FRAT1Q92837 279 aaPredicted RBP11.15□□□□□ -0.62
VAPB-205ENST00000476395 DEPDC5O75140 1603 aa11.15□□□□□ -0.63
VAPB-205ENST00000476395 TMC1Q8TDI8 760 aa11.15□□□□□ -0.63
VAPB-205ENST00000476395 CCDC144AA2RUR9 1427 aa11.14□□□□□ -0.63
VAPB-205ENST00000476395 INSRP06213 1382 aa11.14□□□□□ -0.63
VAPB-205ENST00000476395 ARHGAP5Q13017 1502 aa11.13□□□□□ -0.63
VAPB-205ENST00000476395 ERBINQ96RT1 1412 aa11.13□□□□□ -0.63
VAPB-205ENST00000476395 ZCCHC11Q5TAX3 1644 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms