RNA–Protein interactions for RNA: ENST00000470815.1

HERC3-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-208ENST00000470815 RABGEF1Q9UJ41 708 aa9.37□□□□□ -0.91
HERC3-208ENST00000470815 RGS20O76081 388 aa9.36□□□□□ -0.91
HERC3-208ENST00000470815 COL9A1P20849 921 aa9.33□□□□□ -0.92
HERC3-208ENST00000470815 EPAS1Q99814 870 aa9.33□□□□□ -0.92
HERC3-208ENST00000470815 ONECUT3O60422 494 aaPredicted RBP9.32□□□□□ -0.92
HERC3-208ENST00000470815 PROX2Q3B8N5 592 aa9.32□□□□□ -0.92
HERC3-208ENST00000470815 LAPTM4BQ86VI4 370 aa9.32□□□□□ -0.92
HERC3-208ENST00000470815 ANKK1Q8NFD2 765 aa9.31□□□□□ -0.92
HERC3-208ENST00000470815 A0A0G2JS52 829 aa9.3□□□□□ -0.92
HERC3-208ENST00000470815 DPYSL4O14531 572 aa9.29□□□□□ -0.92
HERC3-208ENST00000470815 C6orf132Q5T0Z8 1188 aa9.28□□□□□ -0.92
HERC3-208ENST00000470815 BBXQ8WY36 941 aaPredicted RBP9.28□□□□□ -0.92
HERC3-208ENST00000470815 NYAP1Q6ZVC0 841 aa9.27□□□□□ -0.93
HERC3-208ENST00000470815 SOWAHBA6NEL2 793 aa9.26□□□□□ -0.93
HERC3-208ENST00000470815 ITGBL1O95965 494 aaPredicted RBP9.26□□□□□ -0.93
HERC3-208ENST00000470815 KIAA1468Q9P260 1216 aa9.25□□□□□ -0.93
HERC3-208ENST00000470815 TRIM6-TRIM34B2RNG4 842 aa9.24□□□□□ -0.93
HERC3-208ENST00000470815 ZFRQ96KR1 1074 aaKnown RBP9.24□□□□□ -0.93
HERC3-208ENST00000470815 BCAMP50895 628 aa9.23□□□□□ -0.93
HERC3-208ENST00000470815 PDIA6Q15084 440 aa9.23□□□□□ -0.93
HERC3-208ENST00000470815 SPDYE16A6NNV3 312 aaPredicted RBP9.21□□□□□ -0.94
HERC3-208ENST00000470815 EN1Q05925 392 aaPredicted RBP9.21□□□□□ -0.94
HERC3-208ENST00000470815 FAM98CQ17RN3 349 aaKnown RBP9.21□□□□□ -0.94
HERC3-208ENST00000470815 DDX12PQ92771 950 aa9.21□□□□□ -0.94
HERC3-208ENST00000470815 RBM33Q96EV2 1170 aaKnown RBP9.2□□□□□ -0.94
HERC3-208ENST00000470815 SEPT9Q9UHD8 586 aaPredicted RBP9.19□□□□□ -0.94
HERC3-208ENST00000470815 NBR1Q14596 966 aa9.18□□□□□ -0.94
HERC3-208ENST00000470815 SPRYD3Q8NCJ5 442 aa9.18□□□□□ -0.94
HERC3-208ENST00000470815 IRX2Q9BZI1 471 aaPredicted RBP9.17□□□□□ -0.94
HERC3-208ENST00000470815 WBP1LQ9NX94 342 aa9.17□□□□□ -0.94
HERC3-208ENST00000470815 ARIH1Q9Y4X5 557 aaPredicted RBP9.17□□□□□ -0.94
HERC3-208ENST00000470815 MAP3K7O43318 606 aa9.16□□□□□ -0.94
HERC3-208ENST00000470815 LRCH3Q96II8 777 aa9.16□□□□□ -0.94
HERC3-208ENST00000470815 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.16□□□□□ -0.94
HERC3-208ENST00000470815 PACS2Q86VP3 889 aa9.15□□□□□ -0.94
HERC3-208ENST00000470815 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.15□□□□□ -0.94
HERC3-208ENST00000470815 TSR3Q9UJK0 312 aaKnown RBP9.15□□□□□ -0.94
HERC3-208ENST00000470815 E2F4Q16254 413 aa9.14□□□□□ -0.95
HERC3-208ENST00000470815 TSR1Q2NL82 804 aaKnown RBP9.14□□□□□ -0.95
HERC3-208ENST00000470815 CERKQ8TCT0 537 aa9.14□□□□□ -0.95
HERC3-208ENST00000470815 TSKSQ9UJT2 592 aa9.14□□□□□ -0.95
HERC3-208ENST00000470815 KCNC4Q03721 635 aa9.13□□□□□ -0.95
HERC3-208ENST00000470815 HPS5Q9UPZ3 1129 aa9.12□□□□□ -0.95
HERC3-208ENST00000470815 PRSS12P56730 875 aa9.1□□□□□ -0.95
HERC3-208ENST00000470815 CDCA7LQ96GN5 454 aa9.1□□□□□ -0.95
HERC3-208ENST00000470815 NBPF26B4DH59 902 aa9.07□□□□□ -0.96
HERC3-208ENST00000470815 WDR70Q9NW82 654 aa9.07□□□□□ -0.96
HERC3-208ENST00000470815 RBM27Q9P2N5 1060 aaKnown RBP9.07□□□□□ -0.96
HERC3-208ENST00000470815 PRIM1P49642 420 aaKnown RBP9.06□□□□□ -0.96
HERC3-208ENST00000470815 FAM198AQ9UFP1 575 aa9.06□□□□□ -0.96
HERC3-208ENST00000470815 PPP4CP60510 307 aa9.05□□□□□ -0.96
HERC3-208ENST00000470815 GRXCR2A6NFK2 248 aa9.04□□□□□ -0.96
HERC3-208ENST00000470815 SAMD7Q7Z3H4 446 aa9.04□□□□□ -0.96
HERC3-208ENST00000470815 TATDN2Q93075 761 aa9.04□□□□□ -0.96
HERC3-208ENST00000470815 OSBPP22059 807 aa9.03□□□□□ -0.96
HERC3-208ENST00000470815 PAXIP1Q6ZW49 1069 aaPredicted RBP9.03□□□□□ -0.96
HERC3-208ENST00000470815 SMAPO00193 183 aa9.02□□□□□ -0.97
HERC3-208ENST00000470815 CFAP44Q96MT7 982 aa9.02□□□□□ -0.97
HERC3-208ENST00000470815 PLCB2Q00722 1185 aa9.01□□□□□ -0.97
HERC3-208ENST00000470815 TJAP1Q5JTD0 557 aa9.01□□□□□ -0.97
HERC3-208ENST00000470815 PNMA3Q9UL41 463 aa9.01□□□□□ -0.97
HERC3-208ENST00000470815 C3orf80F5H4A9 247 aa9□□□□□ -0.97
HERC3-208ENST00000470815 CDHR5Q9HBB8 845 aa9□□□□□ -0.97
HERC3-208ENST00000470815 TTC13Q8NBP0 860 aa8.99□□□□□ -0.97
HERC3-208ENST00000470815 IL21Q9HBE4 155 aa8.99□□□□□ -0.97
HERC3-208ENST00000470815 LAPTM4AQ15012 233 aa8.98□□□□□ -0.97
HERC3-208ENST00000470815 NUDT18Q6ZVK8 323 aa8.98□□□□□ -0.97
HERC3-208ENST00000470815 NECTIN2Q92692 538 aa8.98□□□□□ -0.97
HERC3-208ENST00000470815 HDGFP51858 240 aaKnown RBP8.97□□□□□ -0.97
HERC3-208ENST00000470815 MTRQ99707 1265 aa8.97□□□□□ -0.97
HERC3-208ENST00000470815 Q6ZNB5 142 aa8.95□□□□□ -0.98
HERC3-208ENST00000470815 NPDC1Q9NQX5 325 aaPredicted RBP8.95□□□□□ -0.98
HERC3-208ENST00000470815 PADI6Q6TGC4 694 aa8.93□□□□□ -0.98
HERC3-208ENST00000470815 RNF40O75150 1001 aa8.92□□□□□ -0.98
HERC3-208ENST00000470815 APLP1P51693 650 aa8.92□□□□□ -0.98
HERC3-208ENST00000470815 SLF2Q8IX21 1173 aa8.92□□□□□ -0.98
HERC3-208ENST00000470815 V9GY48 417 aaPredicted RBP8.91□□□□□ -0.98
HERC3-208ENST00000470815 SWT1Q5T5J6 900 aaKnown RBP8.9□□□□□ -0.98
HERC3-208ENST00000470815 PPP1R18Q6NYC8 613 aa8.9□□□□□ -0.98
HERC3-208ENST00000470815 ARHGEF1Q92888 912 aaKnown RBP8.9□□□□□ -0.98
HERC3-208ENST00000470815 PRKD2Q9BZL6 878 aa8.9□□□□□ -0.98
HERC3-208ENST00000470815 SLC4A3P48751 1232 aa8.89□□□□□ -0.99
HERC3-208ENST00000470815 ZNF516Q92618 1163 aa8.89□□□□□ -0.99
HERC3-208ENST00000470815 EYA1Q99502 592 aa8.89□□□□□ -0.99
HERC3-208ENST00000470815 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.89□□□□□ -0.99
HERC3-208ENST00000470815 GFRA3O60609 400 aa8.87□□□□□ -0.99
HERC3-208ENST00000470815 PRR14Q9BWN1 585 aa8.87□□□□□ -0.99
HERC3-208ENST00000470815 NRG2O14511 850 aaPredicted RBP8.85□□□□□ -0.99
HERC3-208ENST00000470815 GGCXP38435 758 aa8.85□□□□□ -0.99
HERC3-208ENST00000470815 MLLT3P42568 568 aaPredicted RBP8.84□□□□□ -0.99
HERC3-208ENST00000470815 TMUB1Q9BVT8 246 aa8.84□□□□□ -0.99
HERC3-208ENST00000470815 LCE2BO14633 110 aa8.83□□□□□ -1
HERC3-208ENST00000470815 PTGDRQ13258 359 aa8.83□□□□□ -1
HERC3-208ENST00000470815 TRAF7Q6Q0C0 670 aa8.83□□□□□ -1
HERC3-208ENST00000470815 KCNV2Q8TDN2 545 aa8.83□□□□□ -1
HERC3-208ENST00000470815 TSHZ2Q9NRE2 1034 aa8.83□□□□□ -1
HERC3-208ENST00000470815 ZPR1O75312 459 aa8.82□□□□□ -1
HERC3-208ENST00000470815 DNAJB2P25686 324 aa8.82□□□□□ -1
HERC3-208ENST00000470815 COPS2P61201 443 aa8.82□□□□□ -1
HERC3-208ENST00000470815 NKX2-3Q8TAU0 364 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms