RNA–Protein interactions for RNA: ENST00000470026.5

BRCA1-209, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-209ENST00000470026 PNISRQ8TF01 805 aaKnown RBP18.58■□□□□ 0.57
BRCA1-209ENST00000470026 LRPPRCP42704 1394 aaKnown RBP18.57■□□□□ 0.56
BRCA1-209ENST00000470026 PLXNC1O60486 1568 aa18.56■□□□□ 0.56
BRCA1-209ENST00000470026 NUDCQ9Y266 331 aa18.56■□□□□ 0.56
BRCA1-209ENST00000470026 LAMC1P11047 1609 aa18.56■□□□□ 0.56
BRCA1-209ENST00000470026 PRAG1Q86YV5 1406 aa18.56■□□□□ 0.56
BRCA1-209ENST00000470026 TTC37Q6PGP7 1564 aa18.55■□□□□ 0.56
BRCA1-209ENST00000470026 ST20-MTHFSA0A0A6YYL1 179 aa18.55■□□□□ 0.56
BRCA1-209ENST00000470026 SYCP2Q9BX26 1530 aa18.55■□□□□ 0.56
BRCA1-209ENST00000470026 GPRASP1Q5JY77 1395 aa18.54■□□□□ 0.56
BRCA1-209ENST00000470026 PLA2R1Q13018 1463 aa18.54■□□□□ 0.56
BRCA1-209ENST00000470026 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.54■□□□□ 0.56
BRCA1-209ENST00000470026 IQGAP3Q86VI3 1631 aa18.54■□□□□ 0.56
BRCA1-209ENST00000470026 BRD4O60885 1362 aaPredicted RBP18.54■□□□□ 0.56
BRCA1-209ENST00000470026 DCAF11Q8TEB1 546 aa18.53■□□□□ 0.56
BRCA1-209ENST00000470026 CHD1O14646 1710 aa18.53■□□□□ 0.56
BRCA1-209ENST00000470026 MSH5O43196 834 aa18.52■□□□□ 0.56
BRCA1-209ENST00000470026 RALBP1Q15311 655 aa18.52■□□□□ 0.55
BRCA1-209ENST00000470026 CCDC144AA2RUR9 1427 aa18.52■□□□□ 0.55
BRCA1-209ENST00000470026 ATP10AO60312 1499 aa18.52■□□□□ 0.55
BRCA1-209ENST00000470026 PLEKHH2Q8IVE3 1493 aa18.52■□□□□ 0.55
BRCA1-209ENST00000470026 MAGI2Q86UL8 1455 aa18.51■□□□□ 0.55
BRCA1-209ENST00000470026 MYBBP1AQ9BQG0 1328 aaKnown RBP18.5■□□□□ 0.55
BRCA1-209ENST00000470026 POLR3GLQ9BT43 218 aa18.5■□□□□ 0.55
BRCA1-209ENST00000470026 KDM2AQ9Y2K7 1162 aa18.5■□□□□ 0.55
BRCA1-209ENST00000470026 MYO5CQ9NQX4 1742 aa18.5■□□□□ 0.55
BRCA1-209ENST00000470026 ARHGAP5Q13017 1502 aa18.5■□□□□ 0.55
BRCA1-209ENST00000470026 ABCC2Q92887 1545 aa18.5■□□□□ 0.55
BRCA1-209ENST00000470026 A2MP01023 1474 aa18.49■□□□□ 0.55
BRCA1-209ENST00000470026 B4GALNT3Q6L9W6 998 aa18.49■□□□□ 0.55
BRCA1-209ENST00000470026 PRDM15P57071 1507 aaPredicted RBP18.49■□□□□ 0.55
BRCA1-209ENST00000470026 TMC1Q8TDI8 760 aa18.48■□□□□ 0.55
BRCA1-209ENST00000470026 PARD3Q8TEW0 1356 aa18.47■□□□□ 0.55
BRCA1-209ENST00000470026 DUOX2Q9NRD8 1548 aa18.47■□□□□ 0.55
BRCA1-209ENST00000470026 EIF2AK4Q9P2K8 1649 aaKnown RBP18.46■□□□□ 0.55
BRCA1-209ENST00000470026 COL17A1Q9UMD9 1497 aaPredicted RBP18.45■□□□□ 0.54
BRCA1-209ENST00000470026 ERBINQ96RT1 1412 aa18.44■□□□□ 0.54
BRCA1-209ENST00000470026 PER1O15534 1290 aaPredicted RBP18.42■□□□□ 0.54
BRCA1-209ENST00000470026 INSRP06213 1382 aa18.42■□□□□ 0.54
BRCA1-209ENST00000470026 WASHC2CQ9Y4E1 1318 aa18.41■□□□□ 0.54
BRCA1-209ENST00000470026 ZMYM4Q5VZL5 1548 aa18.41■□□□□ 0.54
BRCA1-209ENST00000470026 ERCC6L2Q5T890 1561 aa18.41■□□□□ 0.54
BRCA1-209ENST00000470026 RNF17Q9BXT8 1623 aaKnown RBP18.41■□□□□ 0.54
BRCA1-209ENST00000470026 PLCH2O75038 1416 aa18.4■□□□□ 0.54
BRCA1-209ENST00000470026 NBPF1Q3BBV0 1214 aa18.4■□□□□ 0.54
BRCA1-209ENST00000470026 NLRP13Q86W25 1043 aa18.4■□□□□ 0.54
BRCA1-209ENST00000470026 CNGB1Q14028 1251 aaPredicted RBP18.39■□□□□ 0.53
BRCA1-209ENST00000470026 TESK2Q96S53 571 aa18.39■□□□□ 0.53
BRCA1-209ENST00000470026 UHRF1BP1LA0JNW5 1464 aa18.38■□□□□ 0.53
BRCA1-209ENST00000470026 ABCC1P33527 1531 aa18.38■□□□□ 0.53
BRCA1-209ENST00000470026 ZCCHC11Q5TAX3 1644 aaKnown RBP18.36■□□□□ 0.53
BRCA1-209ENST00000470026 DISP3Q9P2K9 1392 aa18.35■□□□□ 0.53
BRCA1-209ENST00000470026 RGL3Q3MIN7 710 aa18.34■□□□□ 0.53
BRCA1-209ENST00000470026 PDE3BQ13370 1112 aa18.34■□□□□ 0.53
BRCA1-209ENST00000470026 ARAP3Q8WWN8 1544 aa18.33■□□□□ 0.52
BRCA1-209ENST00000470026 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.32■□□□□ 0.521e-6■■■□□ 18.6
BRCA1-209ENST00000470026 BLMP54132 1417 aaPredicted RBP18.32■□□□□ 0.52
BRCA1-209ENST00000470026 CLASP1Q7Z460 1538 aa18.31■□□□□ 0.52
BRCA1-209ENST00000470026 CCDC136Q96JN2 1154 aa18.31■□□□□ 0.52
BRCA1-209ENST00000470026 RTEL1-TNFRSF6BF6WH68 1400 aa18.31■□□□□ 0.52
BRCA1-209ENST00000470026 MADDQ8WXG6 1647 aa18.3■□□□□ 0.52
BRCA1-209ENST00000470026 EFCAB2Q5VUJ9 269 aa18.3■□□□□ 0.52
BRCA1-209ENST00000470026 IQGAP1P46940 1657 aa18.3■□□□□ 0.52
BRCA1-209ENST00000470026 TRAPPC8Q9Y2L5 1435 aa18.29■□□□□ 0.52
BRCA1-209ENST00000470026 TRPM2O94759 1503 aa18.29■□□□□ 0.52
BRCA1-209ENST00000470026 RRP1P56182 461 aaKnown RBP18.29■□□□□ 0.52
BRCA1-209ENST00000470026 DEPDC5O75140 1603 aa18.28■□□□□ 0.52
BRCA1-209ENST00000470026 PTPRTO14522 1441 aa18.27■□□□□ 0.52
BRCA1-209ENST00000470026 SPHKAPQ2M3C7 1700 aa18.27■□□□□ 0.52
BRCA1-209ENST00000470026 TMF1P82094 1093 aa18.27■□□□□ 0.52
BRCA1-209ENST00000470026 CEP152O94986 1710 aa18.26■□□□□ 0.51
BRCA1-209ENST00000470026 ZFYVE16Q7Z3T8 1539 aa18.26■□□□□ 0.51
BRCA1-209ENST00000470026 STAC3Q96MF2 364 aa18.25■□□□□ 0.51
BRCA1-209ENST00000470026 PANK3Q9H999 370 aa18.25■□□□□ 0.51
BRCA1-209ENST00000470026 RCAN3Q9UKA8 241 aa18.25■□□□□ 0.51
BRCA1-209ENST00000470026 WDR7Q9Y4E6 1490 aa18.25■□□□□ 0.51
BRCA1-209ENST00000470026 SCAPERQ9BY12 1400 aa18.24■□□□□ 0.51
BRCA1-209ENST00000470026 NEURL4Q96JN8 1562 aa18.24■□□□□ 0.51
BRCA1-209ENST00000470026 SENP3-EIF4A1A0A087X0R7 540 aa18.23■□□□□ 0.51
BRCA1-209ENST00000470026 VWDEQ8N2E2 1590 aa18.23■□□□□ 0.51
BRCA1-209ENST00000470026 ERICH6Q7L0X2 663 aa18.23■□□□□ 0.51
BRCA1-209ENST00000470026 TET3O43151 1660 aa18.22■□□□□ 0.51
BRCA1-209ENST00000470026 CLTCL1P53675 1640 aa18.21■□□□□ 0.51
BRCA1-209ENST00000470026 SYNMO15061 1565 aa18.2■□□□□ 0.5
BRCA1-209ENST00000470026 KIAA1210Q9ULL0 1709 aa18.2■□□□□ 0.5
BRCA1-209ENST00000470026 CC2D1BQ5T0F9 858 aaKnown RBP18.2■□□□□ 0.5
BRCA1-209ENST00000470026 INO80Q9ULG1 1556 aaPredicted RBP18.19■□□□□ 0.5
BRCA1-209ENST00000470026 SCAF11Q99590 1463 aaKnown RBP18.19■□□□□ 0.5
BRCA1-209ENST00000470026 SPAG9O60271 1321 aaKnown RBP18.19■□□□□ 0.5
BRCA1-209ENST00000470026 EXOC6Q8TAG9 804 aa18.18■□□□□ 0.5
BRCA1-209ENST00000470026 ABCA9Q8IUA7 1624 aa18.18■□□□□ 0.5
BRCA1-209ENST00000470026 CDCA7LQ96GN5 454 aa18.16■□□□□ 0.5
BRCA1-209ENST00000470026 MYT1LQ9UL68 1186 aa18.15■□□□□ 0.5
BRCA1-209ENST00000470026 NOP58Q9Y2X3 529 aaKnown RBP18.15■□□□□ 0.5
BRCA1-209ENST00000470026 MYOM1P52179 1685 aa18.15■□□□□ 0.5
BRCA1-209ENST00000470026 NPC1L1Q9UHC9 1359 aa18.15■□□□□ 0.5
BRCA1-209ENST00000470026 ATP7AQ04656 1500 aa18.14■□□□□ 0.5
BRCA1-209ENST00000470026 AMER1Q5JTC6 1135 aaPredicted RBP18.14■□□□□ 0.49
BRCA1-209ENST00000470026 CDCA8Q53HL2 280 aa18.13■□□□□ 0.49
BRCA1-209ENST00000470026 AFAP1Q8N556 730 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms