RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 ZNF454Q8N9F8 522 aa9.25□□□□□ -0.93
VPS41-211ENST00000466017 PCDHGA10Q9Y5H3 936 aa9.25□□□□□ -0.93
VPS41-211ENST00000466017 DDX12PQ92771 950 aa9.24□□□□□ -0.93
VPS41-211ENST00000466017 DMRTA1Q5VZB9 504 aa9.23□□□□□ -0.93
VPS41-211ENST00000466017 ADAM33Q9BZ11 813 aa9.23□□□□□ -0.93
VPS41-211ENST00000466017 ARIH1Q9Y4X5 557 aaPredicted RBP9.23□□□□□ -0.93
VPS41-211ENST00000466017 PDIA6Q15084 440 aa9.22□□□□□ -0.93
VPS41-211ENST00000466017 PLSCR2Q9NRY7 297 aa9.22□□□□□ -0.93
VPS41-211ENST00000466017 LAMC3Q9Y6N6 1575 aa9.21□□□□□ -0.93
VPS41-211ENST00000466017 MLLT3P42568 568 aaPredicted RBP9.2□□□□□ -0.94
VPS41-211ENST00000466017 PCDH10Q9P2E7 1040 aa9.2□□□□□ -0.94
VPS41-211ENST00000466017 SPNS2Q8IVW8 549 aa9.19□□□□□ -0.94
VPS41-211ENST00000466017 PTGER2P43116 358 aa9.18□□□□□ -0.94
VPS41-211ENST00000466017 JPH4Q96JJ6 628 aa9.18□□□□□ -0.94
VPS41-211ENST00000466017 GRXCR2A6NFK2 248 aa9.17□□□□□ -0.94
VPS41-211ENST00000466017 PPP4R3BQ5MIZ7 849 aa9.17□□□□□ -0.94
VPS41-211ENST00000466017 ANKRD13DQ6ZTN6 518 aa9.17□□□□□ -0.94
VPS41-211ENST00000466017 VSIG10Q8N0Z9 540 aa9.17□□□□□ -0.94
VPS41-211ENST00000466017 ARHGEF1Q92888 912 aaKnown RBP9.17□□□□□ -0.94
VPS41-211ENST00000466017 PDS5BQ9NTI5 1447 aa9.16□□□□□ -0.94
VPS41-211ENST00000466017 SEMA3EO15041 775 aa9.16□□□□□ -0.94
VPS41-211ENST00000466017 COL9A1P20849 921 aa9.16□□□□□ -0.94
VPS41-211ENST00000466017 ZDHHC16Q969W1 377 aa9.16□□□□□ -0.94
VPS41-211ENST00000466017 RBM33Q96EV2 1170 aaKnown RBP9.16□□□□□ -0.94
VPS41-211ENST00000466017 KCNK17Q96T54 332 aa9.16□□□□□ -0.94
VPS41-211ENST00000466017 PRDM2Q13029 1718 aa9.16□□□□□ -0.94
VPS41-211ENST00000466017 ARHGAP33O14559 1287 aa9.15□□□□□ -0.94
VPS41-211ENST00000466017 PHF14O94880 888 aa9.15□□□□□ -0.94
VPS41-211ENST00000466017 OSBPP22059 807 aa9.15□□□□□ -0.94
VPS41-211ENST00000466017 SPDYE16A6NNV3 312 aaPredicted RBP9.14□□□□□ -0.95
VPS41-211ENST00000466017 LSM11P83369 360 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS41-211ENST00000466017 TSR1Q2NL82 804 aaKnown RBP9.14□□□□□ -0.95
VPS41-211ENST00000466017 BCL2L12Q9HB09 334 aa9.14□□□□□ -0.95
VPS41-211ENST00000466017 WRNQ14191 1432 aaPredicted RBP eCLIP9.14□□□□□ -0.95
VPS41-211ENST00000466017 FANCD2Q9BXW9 1451 aa9.13□□□□□ -0.95
VPS41-211ENST00000466017 PSDA5PKW4 1024 aaPredicted RBP9.12□□□□□ -0.95
VPS41-211ENST00000466017 NBR1Q14596 966 aa9.12□□□□□ -0.95
VPS41-211ENST00000466017 NESP48681 1621 aa9.12□□□□□ -0.95
VPS41-211ENST00000466017 ABCC8Q09428 1581 aa9.12□□□□□ -0.95
VPS41-211ENST00000466017 TYW1BQ6NUM6 668 aa9.11□□□□□ -0.95
VPS41-211ENST00000466017 C6orf132Q5T0Z8 1188 aa9.1□□□□□ -0.95
VPS41-211ENST00000466017 CDHR5Q9HBB8 845 aa9.1□□□□□ -0.95
VPS41-211ENST00000466017 MMRN1Q13201 1228 aa9.09□□□□□ -0.95
VPS41-211ENST00000466017 PROX2Q3B8N5 592 aa9.09□□□□□ -0.95
VPS41-211ENST00000466017 PBX2P40425 430 aa9.08□□□□□ -0.96
VPS41-211ENST00000466017 EN1Q05925 392 aaPredicted RBP9.08□□□□□ -0.96
VPS41-211ENST00000466017 CEP164Q9UPV0 1460 aa9.08□□□□□ -0.96
VPS41-211ENST00000466017 TOP2BQ02880 1626 aa9.07□□□□□ -0.96
VPS41-211ENST00000466017 HRO43593 1189 aa9.07□□□□□ -0.96
VPS41-211ENST00000466017 PTPREP23469 700 aa9.07□□□□□ -0.96
VPS41-211ENST00000466017 ADGRD1Q6QNK2 874 aa9.07□□□□□ -0.96
VPS41-211ENST00000466017 EPAS1Q99814 870 aa9.07□□□□□ -0.96
VPS41-211ENST00000466017 ZBED2Q9BTP6 218 aa9.07□□□□□ -0.96
VPS41-211ENST00000466017 BIVM-ERCC5R4GMW8 1640 aa9.06□□□□□ -0.96
VPS41-211ENST00000466017 C3orf80F5H4A9 247 aa9.06□□□□□ -0.96
VPS41-211ENST00000466017 VPS9D1Q9Y2B5 631 aa9.06□□□□□ -0.96
VPS41-211ENST00000466017 NPDC1Q9NQX5 325 aaPredicted RBP9.05□□□□□ -0.96
VPS41-211ENST00000466017 FAM198AQ9UFP1 575 aa9.05□□□□□ -0.96
VPS41-211ENST00000466017 CUX1P39880 1505 aa9.05□□□□□ -0.96
VPS41-211ENST00000466017 TESPA1A2RU30 521 aaPredicted RBP9.04□□□□□ -0.96
VPS41-211ENST00000466017 MAP3K7O43318 606 aa9.04□□□□□ -0.96
VPS41-211ENST00000466017 P3H3Q8IVL6 736 aa9.04□□□□□ -0.96
VPS41-211ENST00000466017 FBXW7Q969H0 707 aa9.04□□□□□ -0.96
VPS41-211ENST00000466017 SYNJ1O43426 1573 aa9.03□□□□□ -0.96
VPS41-211ENST00000466017 EEA1Q15075 1411 aa9.03□□□□□ -0.96
VPS41-211ENST00000466017 DNMBPQ6XZF7 1577 aa9.03□□□□□ -0.96
VPS41-211ENST00000466017 TOPBP1Q92547 1522 aa9.02□□□□□ -0.97
VPS41-211ENST00000466017 BHMG1C9JSJ3 638 aaPredicted RBP9.02□□□□□ -0.97
VPS41-211ENST00000466017 RBM26Q5T8P6 1007 aaKnown RBP9.02□□□□□ -0.97
VPS41-211ENST00000466017 TSKSQ9UJT2 592 aa9.01□□□□□ -0.97
VPS41-211ENST00000466017 MRC2Q9UBG0 1479 aa9.01□□□□□ -0.97
VPS41-211ENST00000466017 URB2Q14146 1524 aaKnown RBP9□□□□□ -0.97
VPS41-211ENST00000466017 PPP1R3GB7ZBB8 358 aa9□□□□□ -0.97
VPS41-211ENST00000466017 KIF21AQ7Z4S6 1674 aa9□□□□□ -0.97
VPS41-211ENST00000466017 TK2O00142 265 aa8.99□□□□□ -0.97
VPS41-211ENST00000466017 SLC4A5Q9BY07 1137 aa8.98□□□□□ -0.97
VPS41-211ENST00000466017 KIAA1468Q9P260 1216 aa8.98□□□□□ -0.97
VPS41-211ENST00000466017 MYT1LQ9UL68 1186 aa8.97□□□□□ -0.97
VPS41-211ENST00000466017 SOGA1O94964 1423 aa8.97□□□□□ -0.97
VPS41-211ENST00000466017 ERCC6Q03468 1493 aa8.96□□□□□ -0.97
VPS41-211ENST00000466017 FGD5Q6ZNL6 1462 aa8.96□□□□□ -0.97
VPS41-211ENST00000466017 WDR62O43379 1518 aa8.96□□□□□ -0.97
VPS41-211ENST00000466017 POLA1P09884 1462 aaPredicted RBP8.96□□□□□ -0.98
VPS41-211ENST00000466017 SMAPO00193 183 aa8.95□□□□□ -0.98
VPS41-211ENST00000466017 CDCA7LQ96GN5 454 aa8.95□□□□□ -0.98
VPS41-211ENST00000466017 KIF27Q86VH2 1401 aa8.95□□□□□ -0.98
VPS41-211ENST00000466017 ABCA10Q8WWZ4 1543 aa8.95□□□□□ -0.98
VPS41-211ENST00000466017 TRIM6-TRIM34B2RNG4 842 aa8.94□□□□□ -0.98
VPS41-211ENST00000466017 FECHP22830 423 aa8.94□□□□□ -0.98
VPS41-211ENST00000466017 SEPT9Q9UHD8 586 aaPredicted RBP8.94□□□□□ -0.98
VPS41-211ENST00000466017 GPR37O15354 613 aa8.93□□□□□ -0.98
VPS41-211ENST00000466017 PRSS12P56730 875 aa8.93□□□□□ -0.98
VPS41-211ENST00000466017 PTGDRQ13258 359 aa8.93□□□□□ -0.98
VPS41-211ENST00000466017 FAM161AQ3B820 660 aa8.93□□□□□ -0.98
VPS41-211ENST00000466017 RNF166Q96A37 237 aaPredicted RBP8.93□□□□□ -0.98
VPS41-211ENST00000466017 THOC2Q8NI27 1593 aaKnown RBP8.92□□□□□ -0.98
VPS41-211ENST00000466017 NUTM2FA1L443 756 aa8.92□□□□□ -0.98
VPS41-211ENST00000466017 SLC24A1O60721 1099 aa8.92□□□□□ -0.98
VPS41-211ENST00000466017 PADI6Q6TGC4 694 aa8.92□□□□□ -0.98
VPS41-211ENST00000466017 KCNH8Q96L42 1107 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 1236.3 ms