RNA–Protein interactions for RNA: ENST00000462236.1

COPS3-204, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 551 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-204ENST00000462236 ERCC6Q03468 1493 aa9.78□□□□□ -0.84
COPS3-204ENST00000462236 HIC1Q14526 733 aa9.77□□□□□ -0.85
COPS3-204ENST00000462236 NUDT7P0C024 238 aa9.76□□□□□ -0.85
COPS3-204ENST00000462236 HOXB1P14653 301 aaPredicted RBP9.76□□□□□ -0.85
COPS3-204ENST00000462236 THOC2Q8NI27 1593 aaKnown RBP9.75□□□□□ -0.85
COPS3-204ENST00000462236 AK7Q96M32 723 aa9.75□□□□□ -0.85
COPS3-204ENST00000462236 GNPATO15228 680 aa9.74□□□□□ -0.85
COPS3-204ENST00000462236 PTGDRQ13258 359 aa9.74□□□□□ -0.85
COPS3-204ENST00000462236 CERKQ8TCT0 537 aa9.74□□□□□ -0.85
COPS3-204ENST00000462236 ZDHHC16Q969W1 377 aa9.74□□□□□ -0.85
COPS3-204ENST00000462236 SLC24A3Q9HC58 644 aa9.74□□□□□ -0.85
COPS3-204ENST00000462236 MINK1Q8N4C8 1332 aaPredicted RBP9.74□□□□□ -0.85
COPS3-204ENST00000462236 MAP3K7O43318 606 aa9.73□□□□□ -0.85
COPS3-204ENST00000462236 PRIM1P49642 420 aaKnown RBP9.73□□□□□ -0.85
COPS3-204ENST00000462236 KRI1Q8N9T8 703 aaKnown RBP9.73□□□□□ -0.85
COPS3-204ENST00000462236 HMGXB3Q12766 1538 aa9.72□□□□□ -0.85
COPS3-204ENST00000462236 MAP2K5Q13163 448 aa9.72□□□□□ -0.85
COPS3-204ENST00000462236 ZNF454Q8N9F8 522 aa9.72□□□□□ -0.85
COPS3-204ENST00000462236 KHSRPQ92945 711 aaKnown RBP eCLIP9.72□□□□□ -0.85
COPS3-204ENST00000462236 PPP4R3BQ5MIZ7 849 aa9.71□□□□□ -0.86
COPS3-204ENST00000462236 ATAD2BQ9ULI0 1458 aa9.71□□□□□ -0.86
COPS3-204ENST00000462236 LHX6Q9UPM6 363 aa9.7□□□□□ -0.86
COPS3-204ENST00000462236 NESP48681 1621 aa9.7□□□□□ -0.86
COPS3-204ENST00000462236 C6orf132Q5T0Z8 1188 aa9.68□□□□□ -0.86
COPS3-204ENST00000462236 RBM33Q96EV2 1170 aaKnown RBP9.68□□□□□ -0.86
COPS3-204ENST00000462236 NPDC1Q9NQX5 325 aaPredicted RBP9.68□□□□□ -0.86
COPS3-204ENST00000462236 RBM27Q9P2N5 1060 aaKnown RBP9.68□□□□□ -0.86
COPS3-204ENST00000462236 IRF6O14896 467 aa9.67□□□□□ -0.86
COPS3-204ENST00000462236 SMARCA2P51531 1590 aa9.67□□□□□ -0.86
COPS3-204ENST00000462236 BCL2L12Q9HB09 334 aa9.66□□□□□ -0.86
COPS3-204ENST00000462236 KIF21AQ7Z4S6 1674 aa9.66□□□□□ -0.86
COPS3-204ENST00000462236 SMARCA4P51532 1647 aa9.66□□□□□ -0.86
COPS3-204ENST00000462236 TSR1Q2NL82 804 aaKnown RBP9.65□□□□□ -0.86
COPS3-204ENST00000462236 ADAM33Q9BZ11 813 aa9.65□□□□□ -0.86
COPS3-204ENST00000462236 CDHR5Q9HBB8 845 aa9.65□□□□□ -0.86
COPS3-204ENST00000462236 DAXXQ9UER7 740 aaPredicted RBP9.65□□□□□ -0.86
COPS3-204ENST00000462236 BRPF1P55201 1214 aaPredicted RBP9.64□□□□□ -0.87
COPS3-204ENST00000462236 LAMC3Q9Y6N6 1575 aa9.63□□□□□ -0.87
COPS3-204ENST00000462236 TRIM66O15016 1216 aa9.63□□□□□ -0.87
COPS3-204ENST00000462236 CCDC102AQ96A19 550 aa9.62□□□□□ -0.87
COPS3-204ENST00000462236 PEG3Q9GZU2 1588 aa9.62□□□□□ -0.87
COPS3-204ENST00000462236 PTPREP23469 700 aa9.61□□□□□ -0.87
COPS3-204ENST00000462236 AMHR2Q16671 573 aa9.61□□□□□ -0.87
COPS3-204ENST00000462236 FECHP22830 423 aa9.6□□□□□ -0.87
COPS3-204ENST00000462236 TTC13Q8NBP0 860 aa9.6□□□□□ -0.87
COPS3-204ENST00000462236 PPP1R3GB7ZBB8 358 aa9.59□□□□□ -0.87
COPS3-204ENST00000462236 PDE4DQ08499 809 aa9.59□□□□□ -0.87
COPS3-204ENST00000462236 NEUROD2Q15784 382 aa9.59□□□□□ -0.87
COPS3-204ENST00000462236 TMEM132AQ24JP5 1023 aa9.59□□□□□ -0.87
COPS3-204ENST00000462236 KCNH8Q96L42 1107 aa9.59□□□□□ -0.87
COPS3-204ENST00000462236 ST18O60284 1047 aa9.58□□□□□ -0.88
COPS3-204ENST00000462236 OATP04181 439 aa9.58□□□□□ -0.88
COPS3-204ENST00000462236 PRSS12P56730 875 aa9.58□□□□□ -0.88
COPS3-204ENST00000462236 ONECUT3O60422 494 aaPredicted RBP9.57□□□□□ -0.88
COPS3-204ENST00000462236 ERBB3P21860 1342 aa9.56□□□□□ -0.88
COPS3-204ENST00000462236 CDCA7LQ96GN5 454 aa9.56□□□□□ -0.88
COPS3-204ENST00000462236 PBX2P40425 430 aa9.55□□□□□ -0.88
COPS3-204ENST00000462236 PADI6Q6TGC4 694 aa9.55□□□□□ -0.88
COPS3-204ENST00000462236 BAZ1BQ9UIG0 1483 aaKnown RBP9.54□□□□□ -0.88
COPS3-204ENST00000462236 EMP3P54852 163 aa9.54□□□□□ -0.88
COPS3-204ENST00000462236 COL9A1P20849 921 aa9.53□□□□□ -0.88
COPS3-204ENST00000462236 ADGRG1Q9Y653 693 aa9.53□□□□□ -0.88
COPS3-204ENST00000462236 BAZ1AQ9NRL2 1556 aaPredicted RBP9.53□□□□□ -0.88
COPS3-204ENST00000462236 VARS2Q5ST30 1063 aaKnown RBP9.52□□□□□ -0.89
COPS3-204ENST00000462236 SLC4A5Q9BY07 1137 aa9.52□□□□□ -0.89
COPS3-204ENST00000462236 KDM4CQ9H3R0 1056 aa9.52□□□□□ -0.89
COPS3-204ENST00000462236 ARHGAP33O14559 1287 aa9.51□□□□□ -0.89
COPS3-204ENST00000462236 METTL3Q86U44 580 aaKnown RBP9.51□□□□□ -0.89
COPS3-204ENST00000462236 RBM46Q8TBY0 533 aaKnown RBP9.51□□□□□ -0.89
COPS3-204ENST00000462236 WDR62O43379 1518 aa9.51□□□□□ -0.89
COPS3-204ENST00000462236 PDS5BQ9NTI5 1447 aa9.5□□□□□ -0.89
COPS3-204ENST00000462236 TRIM6-TRIM34B2RNG4 842 aa9.5□□□□□ -0.89
COPS3-204ENST00000462236 CLCN1P35523 988 aa9.5□□□□□ -0.89
COPS3-204ENST00000462236 PACS2Q86VP3 889 aa9.5□□□□□ -0.89
COPS3-204ENST00000462236 ZNF687Q8N1G0 1237 aa9.5□□□□□ -0.89
COPS3-204ENST00000462236 PXYLP1Q8TE99 480 aa9.5□□□□□ -0.89
COPS3-204ENST00000462236 KCNK17Q96T54 332 aa9.5□□□□□ -0.89
COPS3-204ENST00000462236 PARP9Q8IXQ6 854 aa9.49□□□□□ -0.89
COPS3-204ENST00000462236 NBPF26B4DH59 902 aa9.48□□□□□ -0.89
COPS3-204ENST00000462236 FAM163AQ96GL9 167 aaPredicted RBP9.48□□□□□ -0.89
COPS3-204ENST00000462236 TMUB1Q9BVT8 246 aa9.48□□□□□ -0.89
COPS3-204ENST00000462236 GPBP1L1Q9HC44 474 aaPredicted RBP9.48□□□□□ -0.89
COPS3-204ENST00000462236 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.47□□□□□ -0.89
COPS3-204ENST00000462236 TTLL12Q14166 644 aaPredicted RBP9.47□□□□□ -0.89
COPS3-204ENST00000462236 DDRGK1Q96HY6 314 aa9.47□□□□□ -0.89
COPS3-204ENST00000462236 ZBED2Q9BTP6 218 aa9.47□□□□□ -0.89
COPS3-204ENST00000462236 GPCPD1Q9NPB8 672 aa9.47□□□□□ -0.89
COPS3-204ENST00000462236 TSKSQ9UJT2 592 aa9.47□□□□□ -0.89
COPS3-204ENST00000462236 MRC2Q9UBG0 1479 aa9.47□□□□□ -0.89
COPS3-204ENST00000462236 MARVELD3Q96A59 401 aa9.46□□□□□ -0.9
COPS3-204ENST00000462236 EYA1Q99502 592 aa9.46□□□□□ -0.9
COPS3-204ENST00000462236 PHOX2BQ99453 314 aa9.45□□□□□ -0.9
COPS3-204ENST00000462236 FAM198AQ9UFP1 575 aa9.45□□□□□ -0.9
COPS3-204ENST00000462236 FAM205CA6NFA0 338 aa9.44□□□□□ -0.9
COPS3-204ENST00000462236 GIGYF2Q6Y7W6 1299 aaKnown RBP9.44□□□□□ -0.9
COPS3-204ENST00000462236 TATDN2Q93075 761 aa9.44□□□□□ -0.9
COPS3-204ENST00000462236 RABGEF1Q9UJ41 708 aa9.44□□□□□ -0.9
COPS3-204ENST00000462236 MROH2BQ7Z745 1585 aa9.44□□□□□ -0.9
COPS3-204ENST00000462236 CADPSQ9ULU8 1353 aa9.43□□□□□ -0.9
COPS3-204ENST00000462236 HS3ST6Q96QI5 342 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms