RNA–Protein interactions for RNA: ENST00000460120.5

HPS3-202, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2 BASIC

Gene HPS3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-202ENST00000460120 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.68■■□□□ 1.54
HPS3-202ENST00000460120 PLEKHH2Q8IVE3 1493 aa24.67■■□□□ 1.54
HPS3-202ENST00000460120 POLR1AO95602 1720 aaPredicted RBP24.66■■□□□ 1.54
HPS3-202ENST00000460120 RSPH4AQ5TD94 716 aa24.66■■□□□ 1.54
HPS3-202ENST00000460120 SALL2Q9Y467 1007 aaPredicted RBP24.66■■□□□ 1.54
HPS3-202ENST00000460120 KDM5DQ9BY66 1539 aa24.65■■□□□ 1.54
HPS3-202ENST00000460120 ARHGEF12Q9NZN5 1544 aa24.62■■□□□ 1.53
HPS3-202ENST00000460120 PPP4R2Q9NY27 417 aa24.6■■□□□ 1.53
HPS3-202ENST00000460120 MYT1LQ9UL68 1186 aa24.59■■□□□ 1.53
HPS3-202ENST00000460120 ARID4BQ4LE39 1312 aaPredicted RBP24.58■■□□□ 1.53
HPS3-202ENST00000460120 PLA2R1Q13018 1463 aa24.58■■□□□ 1.53
HPS3-202ENST00000460120 ABCC2Q92887 1545 aa24.58■■□□□ 1.53
HPS3-202ENST00000460120 PNISRQ8TF01 805 aaKnown RBP24.58■■□□□ 1.53
HPS3-202ENST00000460120 AFAP1Q8N556 730 aa24.57■■□□□ 1.52
HPS3-202ENST00000460120 PRAG1Q86YV5 1406 aa24.56■■□□□ 1.52
HPS3-202ENST00000460120 EFCAB2Q5VUJ9 269 aa24.55■■□□□ 1.52
HPS3-202ENST00000460120 CC2D1BQ5T0F9 858 aaKnown RBP24.55■■□□□ 1.52
HPS3-202ENST00000460120 SHROOM2Q13796 1616 aa24.52■■□□□ 1.52
HPS3-202ENST00000460120 A2MP01023 1474 aa24.52■■□□□ 1.52
HPS3-202ENST00000460120 TRAPPC8Q9Y2L5 1435 aa24.52■■□□□ 1.52
HPS3-202ENST00000460120 NUDCQ9Y266 331 aa24.51■■□□□ 1.51
HPS3-202ENST00000460120 MYO5CQ9NQX4 1742 aa24.5■■□□□ 1.51
HPS3-202ENST00000460120 MYBBP1AQ9BQG0 1328 aaKnown RBP24.5■■□□□ 1.51
HPS3-202ENST00000460120 ANP32EQ9BTT0 268 aa24.48■■□□□ 1.51
HPS3-202ENST00000460120 DISP3Q9P2K9 1392 aa24.47■■□□□ 1.51
HPS3-202ENST00000460120 PLCH2O75038 1416 aa24.47■■□□□ 1.51
HPS3-202ENST00000460120 SPAG9O60271 1321 aaKnown RBP24.47■■□□□ 1.51
HPS3-202ENST00000460120 SMG6Q86US8 1419 aaKnown RBP24.45■■□□□ 1.51
HPS3-202ENST00000460120 RALBP1Q15311 655 aa24.45■■□□□ 1.5
HPS3-202ENST00000460120 ZCCHC11Q5TAX3 1644 aaKnown RBP24.45■■□□□ 1.5
HPS3-202ENST00000460120 UNC13BO14795 1591 aa24.45■■□□□ 1.5
HPS3-202ENST00000460120 PANK3Q9H999 370 aa24.44■■□□□ 1.5
HPS3-202ENST00000460120 TRPM1Q7Z4N2 1603 aa24.43■■□□□ 1.5
HPS3-202ENST00000460120 KTN1Q86UP2 1357 aaKnown RBP24.43■■□□□ 1.5
HPS3-202ENST00000460120 ERICH6BQ5W0A0 696 aa24.43■■□□□ 1.5
HPS3-202ENST00000460120 DUOX2Q9NRD8 1548 aa24.43■■□□□ 1.5
HPS3-202ENST00000460120 MAST1Q9Y2H9 1570 aa24.42■■□□□ 1.5
HPS3-202ENST00000460120 TESK2Q96S53 571 aa24.42■■□□□ 1.5
HPS3-202ENST00000460120 BCL11AQ9H165 835 aa24.4■■□□□ 1.5
HPS3-202ENST00000460120 BRD4O60885 1362 aaPredicted RBP24.39■■□□□ 1.5
HPS3-202ENST00000460120 PLXNC1O60486 1568 aa24.39■■□□□ 1.49
HPS3-202ENST00000460120 MSH5O43196 834 aa24.38■■□□□ 1.49
HPS3-202ENST00000460120 NLRP13Q86W25 1043 aa24.38■■□□□ 1.49
HPS3-202ENST00000460120 IQGAP3Q86VI3 1631 aa24.38■■□□□ 1.49
HPS3-202ENST00000460120 ERBINQ96RT1 1412 aa24.37■■□□□ 1.49
HPS3-202ENST00000460120 PER1O15534 1290 aaPredicted RBP24.37■■□□□ 1.49
HPS3-202ENST00000460120 TMF1P82094 1093 aa24.37■■□□□ 1.49
HPS3-202ENST00000460120 CCDC136Q96JN2 1154 aa24.36■■□□□ 1.49
HPS3-202ENST00000460120 KIF3BO15066 747 aa24.35■■□□□ 1.49
HPS3-202ENST00000460120 ABCC1P33527 1531 aa24.35■■□□□ 1.49
HPS3-202ENST00000460120 LRPPRCP42704 1394 aaKnown RBP24.33■■□□□ 1.49
HPS3-202ENST00000460120 GPRASP1Q5JY77 1395 aa24.33■■□□□ 1.49
HPS3-202ENST00000460120 COL17A1Q9UMD9 1497 aaPredicted RBP24.32■■□□□ 1.48
HPS3-202ENST00000460120 PARD3Q8TEW0 1356 aa24.31■■□□□ 1.48
HPS3-202ENST00000460120 CLASP1Q7Z460 1538 aa24.31■■□□□ 1.48
HPS3-202ENST00000460120 CDCA7LQ96GN5 454 aa24.31■■□□□ 1.48
HPS3-202ENST00000460120 E9PCH4 1651 aa24.3■■□□□ 1.48
HPS3-202ENST00000460120 PRDM15P57071 1507 aaPredicted RBP24.28■■□□□ 1.48
HPS3-202ENST00000460120 SCAPERQ9BY12 1400 aa24.28■■□□□ 1.48
HPS3-202ENST00000460120 MAGI2Q86UL8 1455 aa24.26■■□□□ 1.47
HPS3-202ENST00000460120 UHRF1BP1LA0JNW5 1464 aa24.25■■□□□ 1.47
HPS3-202ENST00000460120 FANCAO15360 1455 aa24.24■■□□□ 1.47
HPS3-202ENST00000460120 RCAN3Q9UKA8 241 aa24.23■■□□□ 1.47
HPS3-202ENST00000460120 RNF123Q5XPI4 1314 aa24.23■■□□□ 1.47
HPS3-202ENST00000460120 ATP10AO60312 1499 aa24.23■■□□□ 1.47
HPS3-202ENST00000460120 CHGAP10645 457 aaKnown RBP24.22■■□□□ 1.47
HPS3-202ENST00000460120 ERICH6Q7L0X2 663 aa24.22■■□□□ 1.47
HPS3-202ENST00000460120 ZFYVE16Q7Z3T8 1539 aa24.22■■□□□ 1.47
HPS3-202ENST00000460120 KNSTRNQ9Y448 316 aa24.22■■□□□ 1.47
HPS3-202ENST00000460120 EXOC6Q8TAG9 804 aa24.21■■□□□ 1.47
HPS3-202ENST00000460120 WDR7Q9Y4E6 1490 aa24.21■■□□□ 1.47
HPS3-202ENST00000460120 RRP1P56182 461 aaKnown RBP24.2■■□□□ 1.47
HPS3-202ENST00000460120 EIF2AK4Q9P2K8 1649 aaKnown RBP24.2■■□□□ 1.47
HPS3-202ENST00000460120 PLIN1O60240 522 aa24.2■■□□□ 1.46
HPS3-202ENST00000460120 CFAP70Q5T0N1 1121 aa24.19■■□□□ 1.46
HPS3-202ENST00000460120 KANK1Q14678 1352 aa24.19■■□□□ 1.46
HPS3-202ENST00000460120 FANCIQ9NVI1 1328 aa24.18■■□□□ 1.46
HPS3-202ENST00000460120 ADGRL1O94910 1474 aa24.17■■□□□ 1.46
HPS3-202ENST00000460120 UGGT1Q9NYU2 1555 aa24.17■■□□□ 1.46
HPS3-202ENST00000460120 SENP3Q9H4L4 574 aaPredicted RBP24.17■■□□□ 1.46
HPS3-202ENST00000460120 ADAMTS8Q9UP79 889 aa24.16■■□□□ 1.46
HPS3-202ENST00000460120 CLTCL1P53675 1640 aa24.14■■□□□ 1.46
HPS3-202ENST00000460120 ATP7AQ04656 1500 aa24.14■■□□□ 1.45
HPS3-202ENST00000460120 RTEL1-TNFRSF6BF6WH68 1400 aa24.14■■□□□ 1.45
HPS3-202ENST00000460120 ADGRF5Q8IZF2 1346 aa24.13■■□□□ 1.45
HPS3-202ENST00000460120 MADDQ8WXG6 1647 aa24.12■■□□□ 1.45
HPS3-202ENST00000460120 ASXL2Q76L83 1435 aa24.12■■□□□ 1.45
HPS3-202ENST00000460120 TRPM2O94759 1503 aa24.12■■□□□ 1.45
HPS3-202ENST00000460120 PPP2R1AP30153 589 aa24.12■■□□□ 1.45
HPS3-202ENST00000460120 LAMC1P11047 1609 aa24.11■■□□□ 1.45
HPS3-202ENST00000460120 GGT6Q6P531 493 aa24.11■■□□□ 1.45
HPS3-202ENST00000460120 WDR43Q15061 677 aaKnown RBP eCLIP24.11■■□□□ 1.45
HPS3-202ENST00000460120 WASHC2CQ9Y4E1 1318 aa24.1■■□□□ 1.45
HPS3-202ENST00000460120 CCDC146Q8IYE0 955 aa24.08■■□□□ 1.45
HPS3-202ENST00000460120 SCAF11Q99590 1463 aaKnown RBP24.08■■□□□ 1.45
HPS3-202ENST00000460120 PTPRTO14522 1441 aa24.08■■□□□ 1.45
HPS3-202ENST00000460120 RNF17Q9BXT8 1623 aaKnown RBP24.08■■□□□ 1.45
HPS3-202ENST00000460120 SPHKAPQ2M3C7 1700 aa24.07■■□□□ 1.44
HPS3-202ENST00000460120 NPM1P06748 294 aaKnown RBP eCLIP24.07■■□□□ 1.44
HPS3-202ENST00000460120 AMER1Q5JTC6 1135 aaPredicted RBP24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms