RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 MKRN4PQ13434 485 aaPredicted RBP11.59□□□□□ -0.55
VPS50-208ENST00000458707 ADCY10Q96PN6 1610 aa11.58□□□□□ -0.56
VPS50-208ENST00000458707 FAM9BQ8IZU0 186 aa11.58□□□□□ -0.56
VPS50-208ENST00000458707 ANO8Q9HCE9 1232 aaPredicted RBP11.58□□□□□ -0.56
VPS50-208ENST00000458707 PZPP20742 1482 aa11.58□□□□□ -0.56
VPS50-208ENST00000458707 DHX29Q7Z478 1369 aaKnown RBP11.58□□□□□ -0.56
VPS50-208ENST00000458707 RNF123Q5XPI4 1314 aa11.58□□□□□ -0.56
VPS50-208ENST00000458707 EVX2Q03828 476 aa11.57□□□□□ -0.56
VPS50-208ENST00000458707 PRKAR2AP13861 404 aaKnown RBP11.55□□□□□ -0.56
VPS50-208ENST00000458707 B4GALNT3Q6L9W6 998 aa11.55□□□□□ -0.56
VPS50-208ENST00000458707 E9PCH4 1651 aa11.55□□□□□ -0.56
VPS50-208ENST00000458707 ADGRL2O95490 1459 aa11.55□□□□□ -0.56
VPS50-208ENST00000458707 NUP153P49790 1475 aaKnown RBP11.55□□□□□ -0.56
VPS50-208ENST00000458707 ARID4BQ4LE39 1312 aaPredicted RBP11.54□□□□□ -0.56
VPS50-208ENST00000458707 DISP1Q96F81 1524 aa11.54□□□□□ -0.56
VPS50-208ENST00000458707 ZNF692Q9BU19 519 aaPredicted RBP11.53□□□□□ -0.56
VPS50-208ENST00000458707 CAMSAP2Q08AD1 1489 aa11.52□□□□□ -0.57
VPS50-208ENST00000458707 NUDCQ9Y266 331 aa11.52□□□□□ -0.57
VPS50-208ENST00000458707 KIAA1107Q9UPP5 1409 aa11.52□□□□□ -0.57
VPS50-208ENST00000458707 KIAA0586Q9BVV6 1533 aa11.51□□□□□ -0.57
VPS50-208ENST00000458707 CLEC11AQ9Y240 323 aa11.51□□□□□ -0.57
VPS50-208ENST00000458707 UHRF1BP1Q6BDS2 1440 aa11.51□□□□□ -0.57
VPS50-208ENST00000458707 RALGAPBQ86X10 1494 aa11.5□□□□□ -0.57
VPS50-208ENST00000458707 ARHGEF12Q9NZN5 1544 aa11.5□□□□□ -0.57
VPS50-208ENST00000458707 USP47Q96K76 1375 aa11.5□□□□□ -0.57
VPS50-208ENST00000458707 CDC42BPAQ5VT25 1732 aa11.5□□□□□ -0.57
VPS50-208ENST00000458707 C19orf67A6NJJ6 358 aa11.5□□□□□ -0.57
VPS50-208ENST00000458707 ROCK2O75116 1388 aaKnown RBP11.49□□□□□ -0.57
VPS50-208ENST00000458707 NOP58Q9Y2X3 529 aaKnown RBP11.49□□□□□ -0.57
VPS50-208ENST00000458707 TROQ12816 1431 aaPredicted RBP11.48□□□□□ -0.57
VPS50-208ENST00000458707 KDM5DQ9BY66 1539 aa11.48□□□□□ -0.57
VPS50-208ENST00000458707 ZNF644Q9H582 1327 aaPredicted RBP11.48□□□□□ -0.57
VPS50-208ENST00000458707 MRC2Q9UBG0 1479 aa11.47□□□□□ -0.57
VPS50-208ENST00000458707 GPATCH8Q9UKJ3 1502 aaKnown RBP11.47□□□□□ -0.57
VPS50-208ENST00000458707 CEP170Q5SW79 1584 aa11.47□□□□□ -0.57
VPS50-208ENST00000458707 LRPPRCP42704 1394 aaKnown RBP11.46□□□□□ -0.57
VPS50-208ENST00000458707 KTN1Q86UP2 1357 aaKnown RBP11.46□□□□□ -0.57
VPS50-208ENST00000458707 PNISRQ8TF01 805 aaKnown RBP11.45□□□□□ -0.58
VPS50-208ENST00000458707 SHANK2Q9UPX8 1470 aa11.45□□□□□ -0.58
VPS50-208ENST00000458707 IFT140Q96RY7 1462 aa11.44□□□□□ -0.58
VPS50-208ENST00000458707 DEKP35659 375 aaKnown RBP11.44□□□□□ -0.58
VPS50-208ENST00000458707 GRIN2AQ12879 1464 aa11.43□□□□□ -0.58
VPS50-208ENST00000458707 KIF15Q9NS87 1388 aa11.43□□□□□ -0.58
VPS50-208ENST00000458707 PLEKHG5O94827 1062 aa11.43□□□□□ -0.58
VPS50-208ENST00000458707 CCDC136Q96JN2 1154 aa11.43□□□□□ -0.58
VPS50-208ENST00000458707 PRG4Q92954 1404 aaPredicted RBP11.43□□□□□ -0.58
VPS50-208ENST00000458707 BRD4O60885 1362 aaPredicted RBP11.43□□□□□ -0.58
VPS50-208ENST00000458707 ANKRD30AQ9BXX3 1397 aa11.43□□□□□ -0.58
VPS50-208ENST00000458707 TRPM1Q7Z4N2 1603 aa11.42□□□□□ -0.58
VPS50-208ENST00000458707 PAK3O75914 559 aaPredicted RBP11.42□□□□□ -0.58
VPS50-208ENST00000458707 IPO9Q96P70 1041 aaKnown RBP11.42□□□□□ -0.58
VPS50-208ENST00000458707 EIF4G3O43432 1585 aaKnown RBP11.42□□□□□ -0.58
VPS50-208ENST00000458707 ARID3CA6NKF2 412 aa11.41□□□□□ -0.58
VPS50-208ENST00000458707 PKNOX2Q96KN3 472 aa11.41□□□□□ -0.58
VPS50-208ENST00000458707 ANKRD50Q9ULJ7 1429 aa11.41□□□□□ -0.58
VPS50-208ENST00000458707 ZNF608Q9ULD9 1512 aaPredicted RBP11.4□□□□□ -0.58
VPS50-208ENST00000458707 PODXL2Q9NZ53 605 aa11.4□□□□□ -0.58
VPS50-208ENST00000458707 LAMC1P11047 1609 aa11.4□□□□□ -0.58
VPS50-208ENST00000458707 ANP32AP39687 249 aaKnown RBP11.4□□□□□ -0.59
VPS50-208ENST00000458707 PKD2Q13563 968 aa11.4□□□□□ -0.59
VPS50-208ENST00000458707 CFDP1Q9UEE9 299 aaPredicted RBP11.4□□□□□ -0.59
VPS50-208ENST00000458707 PTPRGP23470 1445 aa11.4□□□□□ -0.59
VPS50-208ENST00000458707 ARHGEF5Q12774 1597 aa11.39□□□□□ -0.59
VPS50-208ENST00000458707 ZMYM4Q5VZL5 1548 aa11.39□□□□□ -0.59
VPS50-208ENST00000458707 MYBBP1AQ9BQG0 1328 aaKnown RBP11.39□□□□□ -0.59
VPS50-208ENST00000458707 RALBP1Q15311 655 aa11.38□□□□□ -0.59
VPS50-208ENST00000458707 TMC1Q8TDI8 760 aa11.38□□□□□ -0.59
VPS50-208ENST00000458707 ABCC10Q5T3U5 1492 aa11.38□□□□□ -0.59
VPS50-208ENST00000458707 MYO5CQ9NQX4 1742 aa11.38□□□□□ -0.59
VPS50-208ENST00000458707 PLB1Q6P1J6 1458 aa11.37□□□□□ -0.59
VPS50-208ENST00000458707 ABCA8O94911 1581 aa11.37□□□□□ -0.59
VPS50-208ENST00000458707 INSRP06213 1382 aa11.36□□□□□ -0.59
VPS50-208ENST00000458707 C9orf84Q5VXU9 1444 aa11.36□□□□□ -0.59
VPS50-208ENST00000458707 MAGI1Q96QZ7 1491 aaPredicted RBP11.36□□□□□ -0.59
VPS50-208ENST00000458707 PARD3Q8TEW0 1356 aa11.35□□□□□ -0.59
VPS50-208ENST00000458707 GABBR2O75899 941 aa11.35□□□□□ -0.59
VPS50-208ENST00000458707 RRP1P56182 461 aaKnown RBP11.35□□□□□ -0.59
VPS50-208ENST00000458707 ZNF326Q5BKZ1 582 aaKnown RBP11.34□□□□□ -0.59
VPS50-208ENST00000458707 CARD11Q9BXL7 1154 aa11.34□□□□□ -0.59
VPS50-208ENST00000458707 ZBTB47Q9UFB7 747 aaPredicted RBP11.34□□□□□ -0.59
VPS50-208ENST00000458707 CDC42BPBQ9Y5S2 1711 aa11.34□□□□□ -0.59
VPS50-208ENST00000458707 NUP155O75694 1391 aa11.34□□□□□ -0.59
VPS50-208ENST00000458707 TCERG1O14776 1098 aaKnown RBP11.34□□□□□ -0.59
VPS50-208ENST00000458707 PRR29P0C7W0 189 aa11.34□□□□□ -0.59
VPS50-208ENST00000458707 PDE3BQ13370 1112 aa11.34□□□□□ -0.59
VPS50-208ENST00000458707 UNC13BO14795 1591 aa11.33□□□□□ -0.6
VPS50-208ENST00000458707 NBR1Q14596 966 aa11.33□□□□□ -0.6
VPS50-208ENST00000458707 POLR3GLQ9BT43 218 aa11.33□□□□□ -0.6
VPS50-208ENST00000458707 SALL2Q9Y467 1007 aaPredicted RBP11.33□□□□□ -0.6
VPS50-208ENST00000458707 ST20-MTHFSA0A0A6YYL1 179 aa11.32□□□□□ -0.6
VPS50-208ENST00000458707 PRDM15P57071 1507 aaPredicted RBP11.32□□□□□ -0.6
VPS50-208ENST00000458707 PREX2Q70Z35 1606 aa11.32□□□□□ -0.6
VPS50-208ENST00000458707 CHADLQ6NUI6 762 aa11.32□□□□□ -0.6
VPS50-208ENST00000458707 FBXO41Q8TF61 875 aa11.32□□□□□ -0.6
VPS50-208ENST00000458707 SYNJ2O15056 1496 aa11.32□□□□□ -0.6
VPS50-208ENST00000458707 FAM135AQ9P2D6 1515 aa11.31□□□□□ -0.6
VPS50-208ENST00000458707 EIF2AK4Q9P2K8 1649 aaKnown RBP11.31□□□□□ -0.6
VPS50-208ENST00000458707 PRAG1Q86YV5 1406 aa11.31□□□□□ -0.6
VPS50-208ENST00000458707 MS4A1P11836 297 aa11.31□□□□□ -0.6
VPS50-208ENST00000458707 NLRP13Q86W25 1043 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 112 ms