RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 KCNV2Q8TDN2 545 aa12.09□□□□□ -0.47
VPS50-206ENST00000443443 NBR1Q14596 966 aa12.08□□□□□ -0.48
VPS50-206ENST00000443443 ARHGEF1Q92888 912 aaKnown RBP12.08□□□□□ -0.48
VPS50-206ENST00000443443 STAC3Q96MF2 364 aa12.08□□□□□ -0.48
VPS50-206ENST00000443443 TK2O00142 265 aa12.05□□□□□ -0.48
VPS50-206ENST00000443443 P3H3Q8IVL6 736 aa12.05□□□□□ -0.48
VPS50-206ENST00000443443 C6orf132Q5T0Z8 1188 aa12.03□□□□□ -0.48
VPS50-206ENST00000443443 MAP3K7O43318 606 aa12.02□□□□□ -0.49
VPS50-206ENST00000443443 VPS9D1Q9Y2B5 631 aa12.02□□□□□ -0.49
VPS50-206ENST00000443443 KDM2AQ9Y2K7 1162 aa12.02□□□□□ -0.49
VPS50-206ENST00000443443 PPP1R3GB7ZBB8 358 aa11.99□□□□□ -0.49
VPS50-206ENST00000443443 COL9A1P20849 921 aa11.99□□□□□ -0.49
VPS50-206ENST00000443443 ZBED2Q9BTP6 218 aa11.99□□□□□ -0.49
VPS50-206ENST00000443443 EN1Q05925 392 aaPredicted RBP11.98□□□□□ -0.49
VPS50-206ENST00000443443 VSIG10Q8N0Z9 540 aa11.98□□□□□ -0.49
VPS50-206ENST00000443443 SLC4A5Q9BY07 1137 aa11.97□□□□□ -0.49
VPS50-206ENST00000443443 HRO43593 1189 aa11.96□□□□□ -0.49
VPS50-206ENST00000443443 TSR1Q2NL82 804 aaKnown RBP11.96□□□□□ -0.49
VPS50-206ENST00000443443 PROX2Q3B8N5 592 aa11.95□□□□□ -0.5
VPS50-206ENST00000443443 OSBPP22059 807 aa11.94□□□□□ -0.5
VPS50-206ENST00000443443 MLLT3P42568 568 aaPredicted RBP11.94□□□□□ -0.5
VPS50-206ENST00000443443 GOLGA8CPA6NN73 597 aa11.92□□□□□ -0.5
VPS50-206ENST00000443443 PRIM1P49642 420 aaKnown RBP11.92□□□□□ -0.5
VPS50-206ENST00000443443 SEMA3EO15041 775 aa11.91□□□□□ -0.5
VPS50-206ENST00000443443 MRPL50Q8N5N7 158 aaKnown RBP11.91□□□□□ -0.5
VPS50-206ENST00000443443 NBPF3Q9H094 633 aa11.9□□□□□ -0.5
VPS50-206ENST00000443443 KCTD12Q96CX2 325 aaKnown RBP11.89□□□□□ -0.51
VPS50-206ENST00000443443 KIAA1468Q9P260 1216 aa11.89□□□□□ -0.51
VPS50-206ENST00000443443 RABGEF1Q9UJ41 708 aa11.89□□□□□ -0.51
VPS50-206ENST00000443443 BHMG1C9JSJ3 638 aaPredicted RBP11.88□□□□□ -0.51
VPS50-206ENST00000443443 TRIM6-TRIM34B2RNG4 842 aa11.85□□□□□ -0.51
VPS50-206ENST00000443443 PACS2Q86VP3 889 aa11.85□□□□□ -0.51
VPS50-206ENST00000443443 CERKQ8TCT0 537 aa11.85□□□□□ -0.51
VPS50-206ENST00000443443 CDHR5Q9HBB8 845 aa11.85□□□□□ -0.51
VPS50-206ENST00000443443 HCSTQ9UBK5 93 aa11.85□□□□□ -0.51
VPS50-206ENST00000443443 ONECUT3O60422 494 aaPredicted RBP11.84□□□□□ -0.51
VPS50-206ENST00000443443 CDCA7LQ96GN5 454 aa11.84□□□□□ -0.51
VPS50-206ENST00000443443 PRSS12P56730 875 aa11.83□□□□□ -0.52
VPS50-206ENST00000443443 NUTM2FA1L443 756 aa11.82□□□□□ -0.52
VPS50-206ENST00000443443 WNT2BQ93097 391 aa11.82□□□□□ -0.52
VPS50-206ENST00000443443 SEPT9Q9UHD8 586 aaPredicted RBP11.82□□□□□ -0.52
VPS50-206ENST00000443443 SMYD5Q6GMV2 418 aa11.81□□□□□ -0.52
VPS50-206ENST00000443443 PLA2G2EQ9NZK7 142 aa11.81□□□□□ -0.52
VPS50-206ENST00000443443 TSKSQ9UJT2 592 aa11.81□□□□□ -0.52
VPS50-206ENST00000443443 PTPN5P54829 565 aa11.8□□□□□ -0.52
VPS50-206ENST00000443443 TESPA1A2RU30 521 aaPredicted RBP11.78□□□□□ -0.52
VPS50-206ENST00000443443 LAPTM4BQ86VI4 370 aa11.78□□□□□ -0.52
VPS50-206ENST00000443443 NPDC1Q9NQX5 325 aaPredicted RBP11.77□□□□□ -0.53
VPS50-206ENST00000443443 ANKK1Q8NFD2 765 aa11.76□□□□□ -0.53
VPS50-206ENST00000443443 SMAPO00193 183 aa11.75□□□□□ -0.53
VPS50-206ENST00000443443 ZFRQ96KR1 1074 aaKnown RBP11.75□□□□□ -0.53
VPS50-206ENST00000443443 FAM198AQ9UFP1 575 aa11.75□□□□□ -0.53
VPS50-206ENST00000443443 FAM98CQ17RN3 349 aaKnown RBP11.74□□□□□ -0.53
VPS50-206ENST00000443443 RBM26Q5T8P6 1007 aaKnown RBP11.74□□□□□ -0.53
VPS50-206ENST00000443443 THSD4Q6ZMP0 1018 aa11.74□□□□□ -0.53
VPS50-206ENST00000443443 PNMA3Q9UL41 463 aa11.74□□□□□ -0.53
VPS50-206ENST00000443443 PADI6Q6TGC4 694 aa11.73□□□□□ -0.53
VPS50-206ENST00000443443 TATDN2Q93075 761 aa11.73□□□□□ -0.53
VPS50-206ENST00000443443 NBPF26B4DH59 902 aa11.72□□□□□ -0.53
VPS50-206ENST00000443443 PTGDRQ13258 359 aa11.71□□□□□ -0.53
VPS50-206ENST00000443443 NUDT18Q6ZVK8 323 aa11.71□□□□□ -0.53
VPS50-206ENST00000443443 BCAMP50895 628 aa11.7□□□□□ -0.54
VPS50-206ENST00000443443 RBM27Q9P2N5 1060 aaKnown RBP11.7□□□□□ -0.54
VPS50-206ENST00000443443 FCHSD2O94868 740 aa11.69□□□□□ -0.54
VPS50-206ENST00000443443 C3orf80F5H4A9 247 aa11.68□□□□□ -0.54
VPS50-206ENST00000443443 TULP1O00294 542 aaPredicted RBP11.68□□□□□ -0.54
VPS50-206ENST00000443443 HDGFP51858 240 aaKnown RBP11.68□□□□□ -0.54
VPS50-206ENST00000443443 SOWAHBA6NEL2 793 aa11.67□□□□□ -0.54
VPS50-206ENST00000443443 LRCH3Q96II8 777 aa11.67□□□□□ -0.54
VPS50-206ENST00000443443 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.67□□□□□ -0.54
VPS50-206ENST00000443443 TTC13Q8NBP0 860 aa11.65□□□□□ -0.54
VPS50-206ENST00000443443 SAMD7Q7Z3H4 446 aa11.63□□□□□ -0.55
VPS50-206ENST00000443443 HPS5Q9UPZ3 1129 aa11.62□□□□□ -0.55
VPS50-206ENST00000443443 RNF40O75150 1001 aa11.61□□□□□ -0.55
VPS50-206ENST00000443443 HIC1Q14526 733 aa11.61□□□□□ -0.55
VPS50-206ENST00000443443 FAM161AQ3B820 660 aa11.61□□□□□ -0.55
VPS50-206ENST00000443443 WBP1LQ9NX94 342 aa11.61□□□□□ -0.55
VPS50-206ENST00000443443 PPP4CP60510 307 aa11.6□□□□□ -0.55
VPS50-206ENST00000443443 GPIHBP1Q8IV16 184 aa11.6□□□□□ -0.55
VPS50-206ENST00000443443 TSR3Q9UJK0 312 aaKnown RBP11.6□□□□□ -0.55
VPS50-206ENST00000443443 RBM46Q8TBY0 533 aaKnown RBP11.59□□□□□ -0.55
VPS50-206ENST00000443443 EYA1Q99502 592 aa11.59□□□□□ -0.55
VPS50-206ENST00000443443 GNPATO15228 680 aa11.57□□□□□ -0.56
VPS50-206ENST00000443443 ADGRG1Q9Y653 693 aa11.57□□□□□ -0.56
VPS50-206ENST00000443443 SWT1Q5T5J6 900 aaKnown RBP11.56□□□□□ -0.56
VPS50-206ENST00000443443 FECHP22830 423 aa11.54□□□□□ -0.56
VPS50-206ENST00000443443 SLC4A3P48751 1232 aa11.54□□□□□ -0.56
VPS50-206ENST00000443443 OATP04181 439 aa11.53□□□□□ -0.56
VPS50-206ENST00000443443 NYAP1Q6ZVC0 841 aa11.53□□□□□ -0.56
VPS50-206ENST00000443443 DNAJB2P25686 324 aa11.52□□□□□ -0.57
VPS50-206ENST00000443443 RCCD1A6NED2 376 aa11.51□□□□□ -0.57
VPS50-206ENST00000443443 SLF2Q8IX21 1173 aa11.51□□□□□ -0.57
VPS50-206ENST00000443443 GPR37O15354 613 aa11.5□□□□□ -0.57
VPS50-206ENST00000443443 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.49□□□□□ -0.57
VPS50-206ENST00000443443 PXYLP1Q8TE99 480 aa11.47□□□□□ -0.57
VPS50-206ENST00000443443 TMEM134Q9H6X4 195 aa11.47□□□□□ -0.57
VPS50-206ENST00000443443 SLC24A1O60721 1099 aa11.46□□□□□ -0.57
VPS50-206ENST00000443443 IFFO2Q5TF58 517 aa11.46□□□□□ -0.57
VPS50-206ENST00000443443 METTL3Q86U44 580 aaKnown RBP11.46□□□□□ -0.57
VPS50-206ENST00000443443 NECTIN2Q92692 538 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms