RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 GCC2Q8IWJ2 1684 aa14.92□□□□□ -0.02
PTCH1-208ENST00000430669 MYBBP1AQ9BQG0 1328 aaKnown RBP14.92□□□□□ -0.02
PTCH1-208ENST00000430669 EID1Q9Y6B2 187 aa14.91□□□□□ -0.02
PTCH1-208ENST00000430669 VGFO15240 615 aaPredicted RBP14.9□□□□□ -0.02
PTCH1-208ENST00000430669 PDE3BQ13370 1112 aa14.9□□□□□ -0.02
PTCH1-208ENST00000430669 SAMD9Q5K651 1589 aa14.9□□□□□ -0.02
PTCH1-208ENST00000430669 CFAP44Q96MT7 982 aa14.9□□□□□ -0.02
PTCH1-208ENST00000430669 TRHP20396 242 aaPredicted RBP14.89□□□□□ -0.03
PTCH1-208ENST00000430669 ANP32EQ9BTT0 268 aa14.89□□□□□ -0.03
PTCH1-208ENST00000430669 MLECQ14165 292 aa14.88□□□□□ -0.03
PTCH1-208ENST00000430669 U2SURPO15042 1029 aaKnown RBP14.88□□□□□ -0.03
PTCH1-208ENST00000430669 AKNAQ7Z591 1439 aa14.88□□□□□ -0.03
PTCH1-208ENST00000430669 CHMP4AQ9BY43 222 aa14.87□□□□□ -0.03
PTCH1-208ENST00000430669 CNTLNQ9NXG0 1405 aa14.87□□□□□ -0.03
PTCH1-208ENST00000430669 EVC2Q86UK5 1308 aa14.86□□□□□ -0.03
PTCH1-208ENST00000430669 FAM135AQ9P2D6 1515 aa14.85□□□□□ -0.03
PTCH1-208ENST00000430669 TNNT2P45379 298 aaPredicted RBP14.85□□□□□ -0.03
PTCH1-208ENST00000430669 ARHGEF11O15085 1522 aa14.85□□□□□ -0.03
PTCH1-208ENST00000430669 NAIPQ13075 1403 aa14.84□□□□□ -0.03
PTCH1-208ENST00000430669 IPO8O15397 1037 aaKnown RBP14.84□□□□□ -0.03
PTCH1-208ENST00000430669 SENP3Q9H4L4 574 aaPredicted RBP14.84□□□□□ -0.03
PTCH1-208ENST00000430669 TARBP1Q13395 1621 aaKnown RBP14.84□□□□□ -0.03
PTCH1-208ENST00000430669 ZNF644Q9H582 1327 aaPredicted RBP14.84□□□□□ -0.03
PTCH1-208ENST00000430669 NGEFQ8N5V2 710 aa14.84□□□□□ -0.03
PTCH1-208ENST00000430669 CGNL1Q0VF96 1302 aa14.84□□□□□ -0.03
PTCH1-208ENST00000430669 STK26Q9P289 416 aa14.83□□□□□ -0.03
PTCH1-208ENST00000430669 DNMT1P26358 1616 aaKnown RBP14.83□□□□□ -0.04
PTCH1-208ENST00000430669 ST20-MTHFSA0A0A6YYL1 179 aa14.83□□□□□ -0.04
PTCH1-208ENST00000430669 ZBED9Q6R2W3 1325 aa14.83□□□□□ -0.04
PTCH1-208ENST00000430669 EIF2AK4Q9P2K8 1649 aaKnown RBP14.83□□□□□ -0.04
PTCH1-208ENST00000430669 CFAP74Q9C0B2 1584 aa14.83□□□□□ -0.04
PTCH1-208ENST00000430669 ZBTB7CA1YPR0 619 aa14.82□□□□□ -0.04
PTCH1-208ENST00000430669 RCAN3Q9UKA8 241 aa14.82□□□□□ -0.04
PTCH1-208ENST00000430669 CCDC7Q96M83 1385 aa14.81□□□□□ -0.04
PTCH1-208ENST00000430669 ZNF608Q9ULD9 1512 aaPredicted RBP14.81□□□□□ -0.04
PTCH1-208ENST00000430669 LAS1LQ9Y4W2 734 aaKnown RBP14.81□□□□□ -0.04
PTCH1-208ENST00000430669 NEUROD2Q15784 382 aa14.8□□□□□ -0.04
PTCH1-208ENST00000430669 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.8□□□□□ -0.04
PTCH1-208ENST00000430669 PLB1Q6P1J6 1458 aa14.8□□□□□ -0.04
PTCH1-208ENST00000430669 RTF1Q92541 710 aaKnown RBP14.79□□□□□ -0.04
PTCH1-208ENST00000430669 LMOD3Q0VAK6 560 aa14.79□□□□□ -0.04
PTCH1-208ENST00000430669 CHD1O14646 1710 aa14.78□□□□□ -0.04
PTCH1-208ENST00000430669 FRAT1Q92837 279 aaPredicted RBP14.77□□□□□ -0.05
PTCH1-208ENST00000430669 PRKRIP1Q9H875 184 aaPredicted RBP14.77□□□□□ -0.05
PTCH1-208ENST00000430669 SAFB2Q14151 953 aaKnown RBP eCLIP14.77□□□□□ -0.05
PTCH1-208ENST00000430669 DUOX2Q9NRD8 1548 aa14.77□□□□□ -0.05
PTCH1-208ENST00000430669 GOLGA6L22H0YM25 854 aa14.76□□□□□ -0.05
PTCH1-208ENST00000430669 KIF1BO60333 1816 aa14.75□□□□□ -0.05
PTCH1-208ENST00000430669 GOLGA2Q08379 1002 aa14.75□□□□□ -0.05
PTCH1-208ENST00000430669 WASHC2AQ641Q2 1341 aa14.75□□□□□ -0.05
PTCH1-208ENST00000430669 PANK3Q9H999 370 aa14.74□□□□□ -0.05
PTCH1-208ENST00000430669 U2AF1L5P0DN76 240 aaPredicted RBP14.74□□□□□ -0.05
PTCH1-208ENST00000430669 U2AF1Q01081 240 aaKnown RBP eCLIP14.74□□□□□ -0.05
PTCH1-208ENST00000430669 CYB5RLQ6IPT4 315 aa14.74□□□□□ -0.05
PTCH1-208ENST00000430669 ABCC5O15440 1437 aa14.74□□□□□ -0.05
PTCH1-208ENST00000430669 BRD4O60885 1362 aaPredicted RBP14.73□□□□□ -0.05
PTCH1-208ENST00000430669 TCOF1Q13428 1488 aaKnown RBP14.73□□□□□ -0.05
PTCH1-208ENST00000430669 PMFBP1Q8TBY8 1022 aa14.71□□□□□ -0.05
PTCH1-208ENST00000430669 FAM69CQ0P6D2 419 aa14.71□□□□□ -0.05
PTCH1-208ENST00000430669 SHANK2Q9UPX8 1470 aa14.71□□□□□ -0.05
PTCH1-208ENST00000430669 ADGRL1O94910 1474 aa14.7□□□□□ -0.06
PTCH1-208ENST00000430669 TRAK1Q9UPV9 953 aa14.7□□□□□ -0.06
PTCH1-208ENST00000430669 B4GALNT3Q6L9W6 998 aa14.7□□□□□ -0.06
PTCH1-208ENST00000430669 LMOD2Q6P5Q4 547 aa14.7□□□□□ -0.06
PTCH1-208ENST00000430669 GPATCH8Q9UKJ3 1502 aaKnown RBP14.69□□□□□ -0.06
PTCH1-208ENST00000430669 KIF7Q2M1P5 1343 aa14.69□□□□□ -0.06
PTCH1-208ENST00000430669 CENPJQ9HC77 1338 aaPredicted RBP14.69□□□□□ -0.06
PTCH1-208ENST00000430669 TCERG1O14776 1098 aaKnown RBP14.68□□□□□ -0.06
PTCH1-208ENST00000430669 NCLP19338 710 aaKnown RBP14.68□□□□□ -0.06
PTCH1-208ENST00000430669 NCOA1Q15788 1441 aa14.68□□□□□ -0.06
PTCH1-208ENST00000430669 RPRD2Q5VT52 1461 aaKnown RBP14.68□□□□□ -0.06
PTCH1-208ENST00000430669 ERBINQ96RT1 1412 aa14.68□□□□□ -0.06
PTCH1-208ENST00000430669 NUP153P49790 1475 aaKnown RBP14.68□□□□□ -0.06
PTCH1-208ENST00000430669 NBR1Q14596 966 aa14.67□□□□□ -0.06
PTCH1-208ENST00000430669 RWDD1Q9H446 243 aaPredicted RBP14.67□□□□□ -0.06
PTCH1-208ENST00000430669 HDAC5Q9UQL6 1122 aa14.67□□□□□ -0.06
PTCH1-208ENST00000430669 ANKRD30BQ9BXX2 1392 aa14.67□□□□□ -0.06
PTCH1-208ENST00000430669 E9PSI1 815 aa14.67□□□□□ -0.06
PTCH1-208ENST00000430669 RPGRIP1LQ68CZ1 1315 aa14.66□□□□□ -0.06
PTCH1-208ENST00000430669 FANCAO15360 1455 aa14.66□□□□□ -0.06
PTCH1-208ENST00000430669 NOP58Q9Y2X3 529 aaKnown RBP14.65□□□□□ -0.06
PTCH1-208ENST00000430669 SLC52A1Q9NWF4 448 aa14.64□□□□□ -0.07
PTCH1-208ENST00000430669 SYCP2Q9BX26 1530 aa14.64□□□□□ -0.07
PTCH1-208ENST00000430669 MCCP23508 829 aa14.64□□□□□ -0.07
PTCH1-208ENST00000430669 KAT6BQ8WYB5 2073 aa14.64□□□□□ -0.07
PTCH1-208ENST00000430669 POGZQ7Z3K3 1410 aa14.64□□□□□ -0.07
PTCH1-208ENST00000430669 PAK3O75914 559 aaPredicted RBP14.64□□□□□ -0.07
PTCH1-208ENST00000430669 CEP170Q5SW79 1584 aa14.63□□□□□ -0.07
PTCH1-208ENST00000430669 CD109Q6YHK3 1445 aa14.63□□□□□ -0.07
PTCH1-208ENST00000430669 COG3Q96JB2 828 aa14.63□□□□□ -0.07
PTCH1-208ENST00000430669 NGDNQ8NEJ9 315 aaKnown RBP14.63□□□□□ -0.07
PTCH1-208ENST00000430669 ABCC2Q92887 1545 aa14.63□□□□□ -0.07
PTCH1-208ENST00000430669 RGS3P49796 1198 aa14.62□□□□□ -0.07
PTCH1-208ENST00000430669 OS9Q13438 667 aaPredicted RBP14.62□□□□□ -0.07
PTCH1-208ENST00000430669 AFAP1Q8N556 730 aa14.61□□□□□ -0.07
PTCH1-208ENST00000430669 ATP10BO94823 1461 aa14.61□□□□□ -0.07
PTCH1-208ENST00000430669 CDC42BPAQ5VT25 1732 aa14.61□□□□□ -0.07
PTCH1-208ENST00000430669 AAMPQ13685 434 aa14.6□□□□□ -0.07
PTCH1-208ENST00000430669 A0A0G2JS52 829 aa14.6□□□□□ -0.07
PTCH1-208ENST00000430669 SMC4Q9NTJ3 1288 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms