RNA–Protein interactions for RNA: ENST00000428599.6

CTNND1-208, Transcript of catenin delta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNND1, Length 6,016 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-208ENST00000428599 MARCH6O60337 910 aa11.22□□□□□ -0.61
CTNND1-208ENST00000428599 FAM69CQ0P6D2 419 aa11.21□□□□□ -0.61
CTNND1-208ENST00000428599 PDE4CQ08493 712 aa11.21□□□□□ -0.61
CTNND1-208ENST00000428599 NOP58Q9Y2X3 529 aaKnown RBP11.21□□□□□ -0.62
CTNND1-208ENST00000428599 GRIN2BQ13224 1484 aa11.2□□□□□ -0.62
CTNND1-208ENST00000428599 SYAP1Q96A49 352 aaPredicted RBP11.19□□□□□ -0.62
CTNND1-208ENST00000428599 MRC2Q9UBG0 1479 aa11.19□□□□□ -0.62
CTNND1-208ENST00000428599 SPRYD3Q8NCJ5 442 aa11.19□□□□□ -0.62
CTNND1-208ENST00000428599 CCDC144AA2RUR9 1427 aa11.19□□□□□ -0.62
CTNND1-208ENST00000428599 GBP4Q96PP9 640 aa11.19□□□□□ -0.62
CTNND1-208ENST00000428599 CFTRP13569 1480 aa11.19□□□□□ -0.62
CTNND1-208ENST00000428599 ITPRIPQ8IWB1 547 aa11.18□□□□□ -0.62
CTNND1-208ENST00000428599 U2AF1L5P0DN76 240 aaPredicted RBP11.18□□□□□ -0.62
CTNND1-208ENST00000428599 U2AF1Q01081 240 aaKnown RBP eCLIP11.18□□□□□ -0.622e-10■■□□□ 12.3
CTNND1-208ENST00000428599 TRAK1Q9UPV9 953 aa11.18□□□□□ -0.62
CTNND1-208ENST00000428599 NUTM2FA1L443 756 aa11.18□□□□□ -0.62
CTNND1-208ENST00000428599 NGDNQ8NEJ9 315 aaKnown RBP11.18□□□□□ -0.62
CTNND1-208ENST00000428599 USP35Q9P2H5 1018 aa11.18□□□□□ -0.62
CTNND1-208ENST00000428599 HMMRO75330 724 aa11.17□□□□□ -0.62
CTNND1-208ENST00000428599 RWDD1Q9H446 243 aaPredicted RBP11.17□□□□□ -0.62
CTNND1-208ENST00000428599 TOMM22Q9NS69 142 aa11.17□□□□□ -0.62
CTNND1-208ENST00000428599 TERF2IPQ9NYB0 399 aa11.17□□□□□ -0.62
CTNND1-208ENST00000428599 CSPP1Q1MSJ5 1256 aa11.17□□□□□ -0.62
CTNND1-208ENST00000428599 GOLGA6L1Q8N7Z2 621 aa11.17□□□□□ -0.62
CTNND1-208ENST00000428599 CTDP1Q9Y5B0 961 aaPredicted RBP11.15□□□□□ -0.62
CTNND1-208ENST00000428599 MSH5O43196 834 aa11.15□□□□□ -0.62
CTNND1-208ENST00000428599 CREBRFQ8IUR6 639 aa11.15□□□□□ -0.62
CTNND1-208ENST00000428599 TRIM6-TRIM34B2RNG4 842 aa11.15□□□□□ -0.63
CTNND1-208ENST00000428599 CCER2I3L3R5 266 aa11.15□□□□□ -0.63
CTNND1-208ENST00000428599 TCEAL9Q9UHQ7 104 aa11.14□□□□□ -0.63
CTNND1-208ENST00000428599 HMGXB3Q12766 1538 aa11.14□□□□□ -0.63
CTNND1-208ENST00000428599 UACAQ9BZF9 1416 aa11.14□□□□□ -0.63
CTNND1-208ENST00000428599 TPM3P06753 285 aa11.14□□□□□ -0.63
CTNND1-208ENST00000428599 RALBP1Q15311 655 aa11.14□□□□□ -0.63
CTNND1-208ENST00000428599 TRIM34Q9BYJ4 488 aa11.14□□□□□ -0.63
CTNND1-208ENST00000428599 KIF3AQ9Y496 699 aa11.14□□□□□ -0.63
CTNND1-208ENST00000428599 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.13□□□□□ -0.63
CTNND1-208ENST00000428599 IFT140Q96RY7 1462 aa11.13□□□□□ -0.63
CTNND1-208ENST00000428599 AMPHP49418 695 aa11.13□□□□□ -0.63
CTNND1-208ENST00000428599 B4GALNT3Q6L9W6 998 aa11.13□□□□□ -0.63
CTNND1-208ENST00000428599 LMOD3Q0VAK6 560 aa11.13□□□□□ -0.63
CTNND1-208ENST00000428599 MYOM3Q5VTT5 1437 aa11.13□□□□□ -0.63
CTNND1-208ENST00000428599 VGFO15240 615 aaPredicted RBP11.12□□□□□ -0.63
CTNND1-208ENST00000428599 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.12□□□□□ -0.632e-8■□□□□ 11.3
CTNND1-208ENST00000428599 ZNF644Q9H582 1327 aaPredicted RBP11.12□□□□□ -0.63
CTNND1-208ENST00000428599 SYNJ1O43426 1573 aa11.12□□□□□ -0.63
CTNND1-208ENST00000428599 AMOTL1Q8IY63 956 aa11.12□□□□□ -0.63
CTNND1-208ENST00000428599 NOL10Q9BSC4 688 aaKnown RBP11.12□□□□□ -0.63
CTNND1-208ENST00000428599 PRG4Q92954 1404 aaPredicted RBP11.12□□□□□ -0.63
CTNND1-208ENST00000428599 CNKSR2Q8WXI2 1034 aa11.12□□□□□ -0.63
CTNND1-208ENST00000428599 RTN4Q9NQC3 1192 aaKnown RBP11.12□□□□□ -0.63
CTNND1-208ENST00000428599 TOPBP1Q92547 1522 aa11.11□□□□□ -0.63
CTNND1-208ENST00000428599 CUX1P39880 1505 aa11.11□□□□□ -0.63
CTNND1-208ENST00000428599 PMFBP1Q8TBY8 1022 aa11.11□□□□□ -0.63
CTNND1-208ENST00000428599 DCAF8L1A6NGE4 600 aa11.1□□□□□ -0.63
CTNND1-208ENST00000428599 AMER1Q5JTC6 1135 aaPredicted RBP11.1□□□□□ -0.63
CTNND1-208ENST00000428599 EVA1CP58658 441 aa11.1□□□□□ -0.63
CTNND1-208ENST00000428599 MEX3CQ5U5Q3 659 aaKnown RBP11.1□□□□□ -0.63
CTNND1-208ENST00000428599 SLC4A10Q6U841 1118 aa11.1□□□□□ -0.63
CTNND1-208ENST00000428599 AEBP2Q6ZN18 517 aaPredicted RBP11.1□□□□□ -0.63
CTNND1-208ENST00000428599 CWC22Q9HCG8 908 aaKnown RBP11.1□□□□□ -0.63
CTNND1-208ENST00000428599 CHMP4CQ96CF2 233 aa11.1□□□□□ -0.63
CTNND1-208ENST00000428599 TPM2P07951 284 aa11.09□□□□□ -0.63
CTNND1-208ENST00000428599 AKAP17AQ02040 695 aaKnown RBP11.09□□□□□ -0.63
CTNND1-208ENST00000428599 KIF21BO75037 1637 aa11.09□□□□□ -0.63
CTNND1-208ENST00000428599 ST20-MTHFSA0A0A6YYL1 179 aa11.09□□□□□ -0.63
CTNND1-208ENST00000428599 FGD6Q6ZV73 1430 aa11.09□□□□□ -0.63
CTNND1-208ENST00000428599 SF3A1Q15459 793 aaKnown RBP11.09□□□□□ -0.63
CTNND1-208ENST00000428599 TPD52L1Q16890 204 aaPredicted RBP11.09□□□□□ -0.63
CTNND1-208ENST00000428599 LTV1Q96GA3 475 aaPredicted RBP11.09□□□□□ -0.63
CTNND1-208ENST00000428599 KIF15Q9NS87 1388 aa11.08□□□□□ -0.63
CTNND1-208ENST00000428599 DHX57Q6P158 1386 aaKnown RBP11.08□□□□□ -0.64
CTNND1-208ENST00000428599 SMC4Q9NTJ3 1288 aa11.08□□□□□ -0.64
CTNND1-208ENST00000428599 KIF16BQ96L93 1317 aa11.08□□□□□ -0.64
CTNND1-208ENST00000428599 TSR1Q2NL82 804 aaKnown RBP11.08□□□□□ -0.64
CTNND1-208ENST00000428599 SYNJ2O15056 1496 aa11.08□□□□□ -0.64
CTNND1-208ENST00000428599 ARHGAP5Q13017 1502 aa11.08□□□□□ -0.64
CTNND1-208ENST00000428599 POLA1P09884 1462 aaPredicted RBP11.08□□□□□ -0.64
CTNND1-208ENST00000428599 SNAPC4Q5SXM2 1469 aa11.07□□□□□ -0.64
CTNND1-208ENST00000428599 PES1O00541 588 aaKnown RBP11.07□□□□□ -0.64
CTNND1-208ENST00000428599 CASKIN1Q8WXD9 1431 aa11.07□□□□□ -0.64
CTNND1-208ENST00000428599 TCERG1O14776 1098 aaKnown RBP11.07□□□□□ -0.64
CTNND1-208ENST00000428599 C1orf141Q5JVX7 400 aa11.06□□□□□ -0.64
CTNND1-208ENST00000428599 MINK1Q8N4C8 1332 aaPredicted RBP11.06□□□□□ -0.64
CTNND1-208ENST00000428599 SYNE3Q6ZMZ3 975 aa11.06□□□□□ -0.64
CTNND1-208ENST00000428599 LRRC9Q6ZRR7 1453 aa11.06□□□□□ -0.64
CTNND1-208ENST00000428599 RAD21O60216 631 aa11.06□□□□□ -0.64
CTNND1-208ENST00000428599 TNNT3P45378 269 aaPredicted RBP11.05□□□□□ -0.64
CTNND1-208ENST00000428599 LRRFIP1Q32MZ4 808 aaKnown RBP11.05□□□□□ -0.64
CTNND1-208ENST00000428599 WWC1Q8IX03 1113 aa11.05□□□□□ -0.64
CTNND1-208ENST00000428599 EVC2Q86UK5 1308 aa11.05□□□□□ -0.64
CTNND1-208ENST00000428599 ERICH3Q5RHP9 1530 aa11.05□□□□□ -0.64
CTNND1-208ENST00000428599 CCDC146Q8IYE0 955 aa11.05□□□□□ -0.64
CTNND1-208ENST00000428599 NCOA2Q15596 1464 aa11.05□□□□□ -0.64
CTNND1-208ENST00000428599 ANO8Q9HCE9 1232 aaPredicted RBP11.05□□□□□ -0.64
CTNND1-208ENST00000428599 TOP2BQ02880 1626 aa11.05□□□□□ -0.64
CTNND1-208ENST00000428599 PHF14O94880 888 aa11.05□□□□□ -0.64
CTNND1-208ENST00000428599 PHLDB1Q86UU1 1377 aa11.05□□□□□ -0.64
CTNND1-208ENST00000428599 MFAP1P55081 439 aaKnown RBP11.04□□□□□ -0.64
CTNND1-208ENST00000428599 FYCO1Q9BQS8 1478 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms