RNA–Protein interactions for RNA: ENST00000398868.7

ATL3-201, Transcript of atlastin GTPase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ATL3, Length 7,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-201ENST00000398868 MTMR7Q9Y216 660 aa11.74□□□□□ -0.53
ATL3-201ENST00000398868 MFAP1P55081 439 aaKnown RBP11.74□□□□□ -0.53
ATL3-201ENST00000398868 GOLGA6L3A6NEY3 463 aa11.73□□□□□ -0.53
ATL3-201ENST00000398868 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
ATL3-201ENST00000398868 PIP4K2BP78356 416 aa11.73□□□□□ -0.53
ATL3-201ENST00000398868 NUTM2BA6NNL0 878 aaPredicted RBP11.72□□□□□ -0.53
ATL3-201ENST00000398868 NUTM2EB1AL46 878 aaPredicted RBP11.72□□□□□ -0.53
ATL3-201ENST00000398868 NUTM2AQ8IVF1 878 aaPredicted RBP11.72□□□□□ -0.53
ATL3-201ENST00000398868 SLC4A3P48751 1232 aa11.72□□□□□ -0.53
ATL3-201ENST00000398868 MINK1Q8N4C8 1332 aaPredicted RBP11.72□□□□□ -0.53
ATL3-201ENST00000398868 SOGA1O94964 1423 aa11.72□□□□□ -0.53
ATL3-201ENST00000398868 SMC4Q9NTJ3 1288 aa11.72□□□□□ -0.53
ATL3-201ENST00000398868 NUP155O75694 1391 aa11.72□□□□□ -0.53
ATL3-201ENST00000398868 CARMIL1Q5VZK9 1371 aa11.71□□□□□ -0.53
ATL3-201ENST00000398868 MARCH6O60337 910 aa11.71□□□□□ -0.53
ATL3-201ENST00000398868 FOSBP53539 338 aa11.71□□□□□ -0.53
ATL3-201ENST00000398868 PES1O00541 588 aaKnown RBP11.71□□□□□ -0.54
ATL3-201ENST00000398868 FYB1O15117 783 aa11.71□□□□□ -0.54
ATL3-201ENST00000398868 MCCP23508 829 aa11.7□□□□□ -0.54
ATL3-201ENST00000398868 ZNF771Q7L3S4 317 aaPredicted RBP11.7□□□□□ -0.54
ATL3-201ENST00000398868 STK31Q9BXU1 1019 aa11.7□□□□□ -0.54
ATL3-201ENST00000398868 RILPL2Q969X0 211 aa11.69□□□□□ -0.54
ATL3-201ENST00000398868 SPAG9O60271 1321 aaKnown RBP11.69□□□□□ -0.54
ATL3-201ENST00000398868 PLIN1O60240 522 aa11.67□□□□□ -0.54
ATL3-201ENST00000398868 KRI1Q8N9T8 703 aaKnown RBP11.67□□□□□ -0.54
ATL3-201ENST00000398868 GOLGA6L1Q8N7Z2 621 aa11.67□□□□□ -0.54
ATL3-201ENST00000398868 PSME1Q06323 249 aa11.67□□□□□ -0.54
ATL3-201ENST00000398868 CNKSR2Q8WXI2 1034 aa11.67□□□□□ -0.54
ATL3-201ENST00000398868 GBP4Q96PP9 640 aa11.66□□□□□ -0.54
ATL3-201ENST00000398868 CWC22Q9HCG8 908 aaKnown RBP11.66□□□□□ -0.54
ATL3-201ENST00000398868 MPHOSPH9Q99550 1183 aa11.65□□□□□ -0.54
ATL3-201ENST00000398868 C1orf141Q5JVX7 400 aa11.65□□□□□ -0.54
ATL3-201ENST00000398868 AIMP1Q12904 312 aaKnown RBP11.65□□□□□ -0.55
ATL3-201ENST00000398868 CHMP4CQ96CF2 233 aa11.65□□□□□ -0.55
ATL3-201ENST00000398868 FAM13BQ9NYF5 915 aa11.65□□□□□ -0.55
ATL3-201ENST00000398868 FAM69CQ0P6D2 419 aa11.64□□□□□ -0.55
ATL3-201ENST00000398868 STK11IPQ8N1F8 1099 aa11.64□□□□□ -0.55
ATL3-201ENST00000398868 IPO9Q96P70 1041 aaKnown RBP11.64□□□□□ -0.55
ATL3-201ENST00000398868 RSPH6AQ9H0K4 717 aa11.64□□□□□ -0.55
ATL3-201ENST00000398868 EFCAB2Q5VUJ9 269 aa11.64□□□□□ -0.55
ATL3-201ENST00000398868 CCAR2Q8N163 923 aaKnown RBP11.64□□□□□ -0.55
ATL3-201ENST00000398868 TRIM34Q9BYJ4 488 aa11.64□□□□□ -0.55
ATL3-201ENST00000398868 DHX16O60231 1041 aaKnown RBP11.63□□□□□ -0.55
ATL3-201ENST00000398868 STRN4Q9NRL3 753 aa11.63□□□□□ -0.55
ATL3-201ENST00000398868 KTN1Q86UP2 1357 aaKnown RBP11.63□□□□□ -0.55
ATL3-201ENST00000398868 APPP05067 770 aa11.62□□□□□ -0.55
ATL3-201ENST00000398868 IBSPP21815 317 aaPredicted RBP11.62□□□□□ -0.55
ATL3-201ENST00000398868 VPS37DQ86XT2 251 aa11.62□□□□□ -0.55
ATL3-201ENST00000398868 CTDP1Q9Y5B0 961 aaPredicted RBP11.62□□□□□ -0.55
ATL3-201ENST00000398868 EEA1Q15075 1411 aa11.62□□□□□ -0.55
ATL3-201ENST00000398868 CALRP27797 417 aaKnown RBP11.62□□□□□ -0.55
ATL3-201ENST00000398868 ZNF592Q92610 1267 aa11.61□□□□□ -0.55
ATL3-201ENST00000398868 HMOX1P09601 288 aa11.61□□□□□ -0.55
ATL3-201ENST00000398868 SETQ01105 290 aaPredicted RBP11.6□□□□□ -0.55
ATL3-201ENST00000398868 SMARCA2P51531 1590 aa11.6□□□□□ -0.55
ATL3-201ENST00000398868 TCEAL9Q9UHQ7 104 aa11.6□□□□□ -0.55
ATL3-201ENST00000398868 MS4A1P11836 297 aa11.59□□□□□ -0.55
ATL3-201ENST00000398868 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
ATL3-201ENST00000398868 RCAN3Q9UKA8 241 aa11.59□□□□□ -0.55
ATL3-201ENST00000398868 IPO8O15397 1037 aaKnown RBP11.59□□□□□ -0.55
ATL3-201ENST00000398868 CALD1Q05682 793 aaKnown RBP11.59□□□□□ -0.55
ATL3-201ENST00000398868 TERF2IPQ9NYB0 399 aa11.59□□□□□ -0.55
ATL3-201ENST00000398868 ARHGAP35Q9NRY4 1499 aa11.59□□□□□ -0.55
ATL3-201ENST00000398868 MAPK8IP2Q13387 824 aaPredicted RBP11.59□□□□□ -0.55
ATL3-201ENST00000398868 TTC5Q8N0Z6 440 aa11.59□□□□□ -0.55
ATL3-201ENST00000398868 GPATCH3Q96I76 525 aa11.59□□□□□ -0.55
ATL3-201ENST00000398868 CHMP4BQ9H444 224 aaKnown RBP11.58□□□□□ -0.56
ATL3-201ENST00000398868 MCTP1Q6DN14 999 aa11.58□□□□□ -0.56
ATL3-201ENST00000398868 PKNOX2Q96KN3 472 aa11.57□□□□□ -0.56
ATL3-201ENST00000398868 CARMIL2Q6F5E8 1435 aa11.57□□□□□ -0.56
ATL3-201ENST00000398868 FHOD3Q2V2M9 1422 aa11.57□□□□□ -0.56
ATL3-201ENST00000398868 CCDC180Q9P1Z9 1646 aa11.57□□□□□ -0.56
ATL3-201ENST00000398868 XPCQ01831 940 aaPredicted RBP11.57□□□□□ -0.56
ATL3-201ENST00000398868 TEFQ10587 303 aa11.57□□□□□ -0.56
ATL3-201ENST00000398868 CCDC27Q2M243 656 aa11.57□□□□□ -0.56
ATL3-201ENST00000398868 ANKRD45Q5TZF3 282 aa11.56□□□□□ -0.56
ATL3-201ENST00000398868 COG3Q96JB2 828 aa11.56□□□□□ -0.56
ATL3-201ENST00000398868 PANK3Q9H999 370 aa11.56□□□□□ -0.56
ATL3-201ENST00000398868 ATF3P18847 181 aa11.56□□□□□ -0.56
ATL3-201ENST00000398868 JPH4Q96JJ6 628 aa11.56□□□□□ -0.56
ATL3-201ENST00000398868 PRDM2Q13029 1718 aa11.56□□□□□ -0.56
ATL3-201ENST00000398868 PMFBP1Q8TBY8 1022 aa11.55□□□□□ -0.56
ATL3-201ENST00000398868 PODXL2Q9NZ53 605 aa11.55□□□□□ -0.56
ATL3-201ENST00000398868 GSE1Q14687 1217 aa11.55□□□□□ -0.56
ATL3-201ENST00000398868 C9orf78Q9NZ63 289 aaPredicted RBP11.55□□□□□ -0.56
ATL3-201ENST00000398868 L3MBTL2Q969R5 705 aa11.54□□□□□ -0.56
ATL3-201ENST00000398868 TMEM132EQ6IEE7 984 aa11.54□□□□□ -0.56
ATL3-201ENST00000398868 RBM33Q96EV2 1170 aaKnown RBP11.54□□□□□ -0.56
ATL3-201ENST00000398868 SF3A1Q15459 793 aaKnown RBP11.54□□□□□ -0.56
ATL3-201ENST00000398868 NLRP2Q9NX02 1062 aa11.54□□□□□ -0.56
ATL3-201ENST00000398868 SYAP1Q96A49 352 aaPredicted RBP11.54□□□□□ -0.56
ATL3-201ENST00000398868 RBM42Q9BTD8 480 aaKnown RBP11.53□□□□□ -0.56
ATL3-201ENST00000398868 ST20-MTHFSA0A0A6YYL1 179 aa11.52□□□□□ -0.56
ATL3-201ENST00000398868 H3BQV1 296 aa11.52□□□□□ -0.56
ATL3-201ENST00000398868 IFFO2Q5TF58 517 aa11.52□□□□□ -0.56
ATL3-201ENST00000398868 SETD5Q9C0A6 1442 aa11.52□□□□□ -0.57
ATL3-201ENST00000398868 DHX37Q8IY37 1157 aaKnown RBP11.52□□□□□ -0.57
ATL3-201ENST00000398868 TPD52L1Q16890 204 aaPredicted RBP11.52□□□□□ -0.57
ATL3-201ENST00000398868 TPM4P67936 248 aa11.51□□□□□ -0.57
ATL3-201ENST00000398868 RWDD1Q9H446 243 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms