RNA–Protein interactions for RNA: ENST00000394331.3

HOXC6-202, Transcript of homeobox C6, humanhuman

TSL 1 (best) BASIC

Gene HOXC6, Length 2,943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-202ENST00000394331 BRPF3Q9ULD4 1205 aa25.12■■□□□ 1.61
HOXC6-202ENST00000394331 PTPRGP23470 1445 aa25.11■■□□□ 1.61
HOXC6-202ENST00000394331 NUP155O75694 1391 aa25.11■■□□□ 1.61
HOXC6-202ENST00000394331 MS4A1P11836 297 aa25.1■■□□□ 1.61
HOXC6-202ENST00000394331 PKNOX2Q96KN3 472 aa25.1■■□□□ 1.61
HOXC6-202ENST00000394331 LAS1LQ9Y4W2 734 aaKnown RBP25.09■■□□□ 1.61
HOXC6-202ENST00000394331 KDM5DQ9BY66 1539 aa25.07■■□□□ 1.6
HOXC6-202ENST00000394331 EIF5BO60841 1220 aaKnown RBP25.07■■□□□ 1.6
HOXC6-202ENST00000394331 FAM43AQ8N2R8 423 aa25.06■■□□□ 1.6
HOXC6-202ENST00000394331 ARHGEF5Q12774 1597 aa25.06■■□□□ 1.6
HOXC6-202ENST00000394331 USP47Q96K76 1375 aa25.06■■□□□ 1.6
HOXC6-202ENST00000394331 ARID4BQ4LE39 1312 aaPredicted RBP25.06■■□□□ 1.6
HOXC6-202ENST00000394331 UHRF1BP1Q6BDS2 1440 aa25.05■■□□□ 1.6
HOXC6-202ENST00000394331 RSPH4AQ5TD94 716 aa25.04■■□□□ 1.6
HOXC6-202ENST00000394331 DDRGK1Q96HY6 314 aa25.04■■□□□ 1.6
HOXC6-202ENST00000394331 KIF15Q9NS87 1388 aa25.04■■□□□ 1.6
HOXC6-202ENST00000394331 BACH2Q9BYV9 841 aa25.04■■□□□ 1.6
HOXC6-202ENST00000394331 PDE4AP27815 886 aa25.02■■□□□ 1.6
HOXC6-202ENST00000394331 HNRNPMP52272 730 aaKnown RBP eCLIP25.02■■□□□ 1.6
HOXC6-202ENST00000394331 ZNF326Q5BKZ1 582 aaKnown RBP25.02■■□□□ 1.6
HOXC6-202ENST00000394331 ARHGEF12Q9NZN5 1544 aa25.01■■□□□ 1.59
HOXC6-202ENST00000394331 CCDC141Q6ZP82 1450 aa24.99■■□□□ 1.59
HOXC6-202ENST00000394331 RALGAPBQ86X10 1494 aa24.99■■□□□ 1.59
HOXC6-202ENST00000394331 GLIPR1L2Q4G1C9 344 aa24.96■■□□□ 1.59
HOXC6-202ENST00000394331 NPM2Q86SE8 214 aaKnown RBP24.96■■□□□ 1.59
HOXC6-202ENST00000394331 KDM5CP41229 1560 aa24.95■■□□□ 1.59
HOXC6-202ENST00000394331 ROCK2O75116 1388 aaKnown RBP24.95■■□□□ 1.58
HOXC6-202ENST00000394331 DHX29Q7Z478 1369 aaKnown RBP24.94■■□□□ 1.58
HOXC6-202ENST00000394331 PREX2Q70Z35 1606 aa24.93■■□□□ 1.58
HOXC6-202ENST00000394331 SAMD9LQ8IVG5 1584 aa24.92■■□□□ 1.58
HOXC6-202ENST00000394331 NFKBIBQ15653 356 aa24.92■■□□□ 1.58
HOXC6-202ENST00000394331 CARD11Q9BXL7 1154 aa24.92■■□□□ 1.58
HOXC6-202ENST00000394331 BCORL1Q5H9F3 1711 aa24.91■■□□□ 1.58
HOXC6-202ENST00000394331 FRAT1Q92837 279 aaPredicted RBP24.91■■□□□ 1.58
HOXC6-202ENST00000394331 POLR3GLQ9BT43 218 aa24.89■■□□□ 1.57
HOXC6-202ENST00000394331 CDC42BPBQ9Y5S2 1711 aa24.88■■□□□ 1.57
HOXC6-202ENST00000394331 FAM135AQ9P2D6 1515 aa24.86■■□□□ 1.57
HOXC6-202ENST00000394331 DCAF11Q8TEB1 546 aa24.85■■□□□ 1.57
HOXC6-202ENST00000394331 KDM2AQ9Y2K7 1162 aa24.85■■□□□ 1.57
HOXC6-202ENST00000394331 SHROOM2Q13796 1616 aa24.84■■□□□ 1.57
HOXC6-202ENST00000394331 MAST1Q9Y2H9 1570 aa24.84■■□□□ 1.57
HOXC6-202ENST00000394331 PLEKHH2Q8IVE3 1493 aa24.82■■□□□ 1.56
HOXC6-202ENST00000394331 ARHGAP5Q13017 1502 aa24.82■■□□□ 1.56
HOXC6-202ENST00000394331 CHD1O14646 1710 aa24.82■■□□□ 1.56
HOXC6-202ENST00000394331 RRP1P56182 461 aaKnown RBP24.82■■□□□ 1.56
HOXC6-202ENST00000394331 SYCP2Q9BX26 1530 aa24.81■■□□□ 1.56
HOXC6-202ENST00000394331 CCDC144AA2RUR9 1427 aa24.8■■□□□ 1.56
HOXC6-202ENST00000394331 ST20-MTHFSA0A0A6YYL1 179 aa24.79■■□□□ 1.56
HOXC6-202ENST00000394331 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.79■■□□□ 1.56
HOXC6-202ENST00000394331 ABCC2Q92887 1545 aa24.79■■□□□ 1.56
HOXC6-202ENST00000394331 TTC37Q6PGP7 1564 aa24.78■■□□□ 1.56
HOXC6-202ENST00000394331 KTN1Q86UP2 1357 aaKnown RBP24.76■■□□□ 1.55
HOXC6-202ENST00000394331 UNC13BO14795 1591 aa24.76■■□□□ 1.55
HOXC6-202ENST00000394331 PLXNC1O60486 1568 aa24.73■■□□□ 1.55
HOXC6-202ENST00000394331 PRAG1Q86YV5 1406 aa24.73■■□□□ 1.55
HOXC6-202ENST00000394331 EXOC6Q8TAG9 804 aa24.72■■□□□ 1.55
HOXC6-202ENST00000394331 TMC1Q8TDI8 760 aa24.72■■□□□ 1.55
HOXC6-202ENST00000394331 LRPPRCP42704 1394 aaKnown RBP24.72■■□□□ 1.55
HOXC6-202ENST00000394331 CNGB1Q14028 1251 aaPredicted RBP24.72■■□□□ 1.55
HOXC6-202ENST00000394331 RALBP1Q15311 655 aa24.71■■□□□ 1.55
HOXC6-202ENST00000394331 PNISRQ8TF01 805 aaKnown RBP24.71■■□□□ 1.55
HOXC6-202ENST00000394331 MYO5CQ9NQX4 1742 aa24.71■■□□□ 1.55
HOXC6-202ENST00000394331 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.69■■□□□ 1.54
HOXC6-202ENST00000394331 PLA2R1Q13018 1463 aa24.69■■□□□ 1.54
HOXC6-202ENST00000394331 DUOX2Q9NRD8 1548 aa24.69■■□□□ 1.54
HOXC6-202ENST00000394331 IQGAP3Q86VI3 1631 aa24.67■■□□□ 1.54
HOXC6-202ENST00000394331 PLCH2O75038 1416 aa24.67■■□□□ 1.54
HOXC6-202ENST00000394331 GPRASP1Q5JY77 1395 aa24.67■■□□□ 1.54
HOXC6-202ENST00000394331 BRD4O60885 1362 aaPredicted RBP24.66■■□□□ 1.54
HOXC6-202ENST00000394331 EFCAB2Q5VUJ9 269 aa24.66■■□□□ 1.54
HOXC6-202ENST00000394331 ERCC6L2Q5T890 1561 aa24.66■■□□□ 1.54
HOXC6-202ENST00000394331 ERBINQ96RT1 1412 aa24.66■■□□□ 1.54
HOXC6-202ENST00000394331 MYBBP1AQ9BQG0 1328 aaKnown RBP24.66■■□□□ 1.54
HOXC6-202ENST00000394331 TRPM1Q7Z4N2 1603 aa24.66■■□□□ 1.54
HOXC6-202ENST00000394331 RGL3Q3MIN7 710 aa24.65■■□□□ 1.54
HOXC6-202ENST00000394331 DAXXQ9UER7 740 aaPredicted RBP24.65■■□□□ 1.54
HOXC6-202ENST00000394331 ATP10AO60312 1499 aa24.64■■□□□ 1.54
HOXC6-202ENST00000394331 ZMYND15Q9H091 742 aa24.64■■□□□ 1.54
HOXC6-202ENST00000394331 RCAN3Q9UKA8 241 aa24.63■■□□□ 1.53
HOXC6-202ENST00000394331 A2MP01023 1474 aa24.63■■□□□ 1.53
HOXC6-202ENST00000394331 UHRF1BP1LA0JNW5 1464 aa24.63■■□□□ 1.53
HOXC6-202ENST00000394331 MAGI2Q86UL8 1455 aa24.62■■□□□ 1.53
HOXC6-202ENST00000394331 RRP9O43818 475 aaKnown RBP24.61■■□□□ 1.53
HOXC6-202ENST00000394331 PDE3BQ13370 1112 aa24.61■■□□□ 1.53
HOXC6-202ENST00000394331 E9PCH4 1651 aa24.6■■□□□ 1.53
HOXC6-202ENST00000394331 NBPF1Q3BBV0 1214 aa24.59■■□□□ 1.53
HOXC6-202ENST00000394331 LAMC1P11047 1609 aa24.59■■□□□ 1.53
HOXC6-202ENST00000394331 EIF2AK4Q9P2K8 1649 aaKnown RBP24.57■■□□□ 1.52
HOXC6-202ENST00000394331 FRAT2O75474 233 aaPredicted RBP24.56■■□□□ 1.52
HOXC6-202ENST00000394331 L1TD1Q5T7N2 865 aaKnown RBP24.56■■□□□ 1.52
HOXC6-202ENST00000394331 ZCCHC11Q5TAX3 1644 aaKnown RBP24.56■■□□□ 1.52
HOXC6-202ENST00000394331 VSIG10Q8N0Z9 540 aa24.55■■□□□ 1.52
HOXC6-202ENST00000394331 RRAGDQ9NQL2 400 aaPredicted RBP24.55■■□□□ 1.52
HOXC6-202ENST00000394331 NLRP13Q86W25 1043 aa24.55■■□□□ 1.52
HOXC6-202ENST00000394331 ABCC1P33527 1531 aa24.55■■□□□ 1.52
HOXC6-202ENST00000394331 PRDM15P57071 1507 aaPredicted RBP24.55■■□□□ 1.52
HOXC6-202ENST00000394331 CLASP1Q7Z460 1538 aa24.54■■□□□ 1.52
HOXC6-202ENST00000394331 PARD3Q8TEW0 1356 aa24.53■■□□□ 1.52
HOXC6-202ENST00000394331 COL17A1Q9UMD9 1497 aaPredicted RBP24.53■■□□□ 1.52
HOXC6-202ENST00000394331 TESK2Q96S53 571 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms