RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 CCDC184Q52MB2 194 aa14.91□□□□□ -0.02
NEDD9-201ENST00000379433 PLEKHH2Q8IVE3 1493 aa14.9□□□□□ -0.02
NEDD9-201ENST00000379433 HNRNPUQ00839 825 aaKnown RBP eCLIP14.9□□□□□ -0.02
NEDD9-201ENST00000379433 MBD5Q9P267 1494 aa14.9□□□□□ -0.02
NEDD9-201ENST00000379433 RPRD2Q5VT52 1461 aaKnown RBP14.9□□□□□ -0.02
NEDD9-201ENST00000379433 TRAPPC8Q9Y2L5 1435 aa14.89□□□□□ -0.03
NEDD9-201ENST00000379433 TPRNQ4KMQ1 711 aa14.89□□□□□ -0.03
NEDD9-201ENST00000379433 ST20-MTHFSA0A0A6YYL1 179 aa14.89□□□□□ -0.03
NEDD9-201ENST00000379433 GGT6Q6P531 493 aa14.89□□□□□ -0.03
NEDD9-201ENST00000379433 SAMD9LQ8IVG5 1584 aa14.88□□□□□ -0.03
NEDD9-201ENST00000379433 NBPF1Q3BBV0 1214 aa14.88□□□□□ -0.03
NEDD9-201ENST00000379433 RSPH4AQ5TD94 716 aa14.88□□□□□ -0.03
NEDD9-201ENST00000379433 KIF7Q2M1P5 1343 aa14.86□□□□□ -0.03
NEDD9-201ENST00000379433 KDM5BQ9UGL1 1544 aa14.86□□□□□ -0.03
NEDD9-201ENST00000379433 SCAPERQ9BY12 1400 aa14.86□□□□□ -0.03
NEDD9-201ENST00000379433 ARHGEF12Q9NZN5 1544 aa14.85□□□□□ -0.03
NEDD9-201ENST00000379433 CDC42BPBQ9Y5S2 1711 aa14.85□□□□□ -0.03
NEDD9-201ENST00000379433 MRS2Q9HD23 443 aa14.85□□□□□ -0.03
NEDD9-201ENST00000379433 RAPGEF3O95398 923 aa14.85□□□□□ -0.03
NEDD9-201ENST00000379433 USP47Q96K76 1375 aa14.85□□□□□ -0.03
NEDD9-201ENST00000379433 ADCY10Q96PN6 1610 aa14.84□□□□□ -0.03
NEDD9-201ENST00000379433 CCDC144AA2RUR9 1427 aa14.84□□□□□ -0.03
NEDD9-201ENST00000379433 IRX6P78412 446 aaPredicted RBP14.83□□□□□ -0.04
NEDD9-201ENST00000379433 PLCH2O75038 1416 aa14.83□□□□□ -0.04
NEDD9-201ENST00000379433 ZCCHC11Q5TAX3 1644 aaKnown RBP14.82□□□□□ -0.04
NEDD9-201ENST00000379433 NUTM2DQ5VT03 806 aaPredicted RBP14.82□□□□□ -0.04
NEDD9-201ENST00000379433 DHX37Q8IY37 1157 aaKnown RBP14.82□□□□□ -0.04
NEDD9-201ENST00000379433 ROCK2O75116 1388 aaKnown RBP14.82□□□□□ -0.04
NEDD9-201ENST00000379433 ADGRL2O95490 1459 aa14.82□□□□□ -0.04
NEDD9-201ENST00000379433 BCL11BQ9C0K0 894 aaPredicted RBP14.82□□□□□ -0.04
NEDD9-201ENST00000379433 TEX14Q8IWB6 1497 aa14.81□□□□□ -0.04
NEDD9-201ENST00000379433 SHROOM2Q13796 1616 aa14.81□□□□□ -0.04
NEDD9-201ENST00000379433 CCDC7Q96M83 1385 aa14.81□□□□□ -0.04
NEDD9-201ENST00000379433 CCDC136Q96JN2 1154 aa14.81□□□□□ -0.04
NEDD9-201ENST00000379433 CLASP1Q7Z460 1538 aa14.81□□□□□ -0.04
NEDD9-201ENST00000379433 ASXL2Q76L83 1435 aa14.81□□□□□ -0.04
NEDD9-201ENST00000379433 SALL2Q9Y467 1007 aaPredicted RBP14.81□□□□□ -0.04
NEDD9-201ENST00000379433 FKBP8Q14318 412 aa14.8□□□□□ -0.04
NEDD9-201ENST00000379433 ADGBQ8N7X0 1667 aa14.79□□□□□ -0.04
NEDD9-201ENST00000379433 FANCAO15360 1455 aa14.78□□□□□ -0.04
NEDD9-201ENST00000379433 PREX2Q70Z35 1606 aa14.78□□□□□ -0.04
NEDD9-201ENST00000379433 PRKRIP1Q9H875 184 aaPredicted RBP14.77□□□□□ -0.05
NEDD9-201ENST00000379433 FAM135AQ9P2D6 1515 aa14.77□□□□□ -0.05
NEDD9-201ENST00000379433 CHMP4AQ9BY43 222 aa14.76□□□□□ -0.05
NEDD9-201ENST00000379433 WDR7Q9Y4E6 1490 aa14.76□□□□□ -0.05
NEDD9-201ENST00000379433 CROCC2H7BZ55 1655 aa14.76□□□□□ -0.05
NEDD9-201ENST00000379433 SHANK2Q9UPX8 1470 aa14.75□□□□□ -0.05
NEDD9-201ENST00000379433 CCER2I3L3R5 266 aa14.75□□□□□ -0.05
NEDD9-201ENST00000379433 SUPT16HQ9Y5B9 1047 aaKnown RBP14.74□□□□□ -0.05
NEDD9-201ENST00000379433 MYO5CQ9NQX4 1742 aa14.74□□□□□ -0.05
NEDD9-201ENST00000379433 ADGRL1O94910 1474 aa14.74□□□□□ -0.05
NEDD9-201ENST00000379433 A0A0U1RQG5 324 aaPredicted RBP14.73□□□□□ -0.05
NEDD9-201ENST00000379433 MLECQ14165 292 aa14.73□□□□□ -0.05
NEDD9-201ENST00000379433 CC2D1BQ5T0F9 858 aaKnown RBP14.73□□□□□ -0.05
NEDD9-201ENST00000379433 FAM69CQ0P6D2 419 aa14.71□□□□□ -0.05
NEDD9-201ENST00000379433 CNTLNQ9NXG0 1405 aa14.71□□□□□ -0.06
NEDD9-201ENST00000379433 CD109Q6YHK3 1445 aa14.7□□□□□ -0.06
NEDD9-201ENST00000379433 ARHGEF5Q12774 1597 aa14.7□□□□□ -0.06
NEDD9-201ENST00000379433 CFAP65Q6ZU64 1925 aaKnown RBP14.7□□□□□ -0.06
NEDD9-201ENST00000379433 TMC1Q8TDI8 760 aa14.69□□□□□ -0.06
NEDD9-201ENST00000379433 WASHC2CQ9Y4E1 1318 aa14.68□□□□□ -0.06
NEDD9-201ENST00000379433 UHRF1BP1LA0JNW5 1464 aa14.67□□□□□ -0.06
NEDD9-201ENST00000379433 PLA2R1Q13018 1463 aa14.67□□□□□ -0.06
NEDD9-201ENST00000379433 KANK1Q14678 1352 aa14.67□□□□□ -0.06
NEDD9-201ENST00000379433 SAFB2Q14151 953 aaKnown RBP eCLIP14.66□□□□□ -0.06
NEDD9-201ENST00000379433 SPATA31E1Q6ZUB1 1445 aa14.65□□□□□ -0.06
NEDD9-201ENST00000379433 CFAP70Q5T0N1 1121 aa14.65□□□□□ -0.06
NEDD9-201ENST00000379433 ABCC1P33527 1531 aa14.64□□□□□ -0.07
NEDD9-201ENST00000379433 TAF7LQ5H9L4 462 aa14.64□□□□□ -0.07
NEDD9-201ENST00000379433 DUOX2Q9NRD8 1548 aa14.64□□□□□ -0.07
NEDD9-201ENST00000379433 TMEM132EQ6IEE7 984 aa14.62□□□□□ -0.07
NEDD9-201ENST00000379433 PANK3Q9H999 370 aa14.61□□□□□ -0.07
NEDD9-201ENST00000379433 A2MP01023 1474 aa14.61□□□□□ -0.07
NEDD9-201ENST00000379433 FGD1P98174 961 aa14.6□□□□□ -0.07
NEDD9-201ENST00000379433 TRAK1Q9UPV9 953 aa14.6□□□□□ -0.07
NEDD9-201ENST00000379433 ADGRF5Q8IZF2 1346 aa14.59□□□□□ -0.07
NEDD9-201ENST00000379433 ERBINQ96RT1 1412 aa14.59□□□□□ -0.07
NEDD9-201ENST00000379433 UGGT1Q9NYU2 1555 aa14.59□□□□□ -0.07
NEDD9-201ENST00000379433 PRAG1Q86YV5 1406 aa14.59□□□□□ -0.07
NEDD9-201ENST00000379433 TMF1P82094 1093 aa14.58□□□□□ -0.07
NEDD9-201ENST00000379433 DHX29Q7Z478 1369 aaKnown RBP14.58□□□□□ -0.08
NEDD9-201ENST00000379433 BCORL1Q5H9F3 1711 aa14.58□□□□□ -0.08
NEDD9-201ENST00000379433 STK26Q9P289 416 aa14.58□□□□□ -0.08
NEDD9-201ENST00000379433 DISP3Q9P2K9 1392 aa14.58□□□□□ -0.08
NEDD9-201ENST00000379433 ATP7AQ04656 1500 aa14.57□□□□□ -0.08
NEDD9-201ENST00000379433 TNNT2P45379 298 aaPredicted RBP14.57□□□□□ -0.08
NEDD9-201ENST00000379433 STAG3Q9UJ98 1225 aa14.57□□□□□ -0.08
NEDD9-201ENST00000379433 RALGAPBQ86X10 1494 aa14.56□□□□□ -0.08
NEDD9-201ENST00000379433 ZFYVE16Q7Z3T8 1539 aa14.56□□□□□ -0.08
NEDD9-201ENST00000379433 FBXO31Q5XUX0 539 aaPredicted RBP14.54□□□□□ -0.08
NEDD9-201ENST00000379433 TESK2Q96S53 571 aa14.54□□□□□ -0.08
NEDD9-201ENST00000379433 KDM5DQ9BY66 1539 aa14.53□□□□□ -0.08
NEDD9-201ENST00000379433 ARID4BQ4LE39 1312 aaPredicted RBP14.53□□□□□ -0.08
NEDD9-201ENST00000379433 UHRF1BP1Q6BDS2 1440 aa14.53□□□□□ -0.08
NEDD9-201ENST00000379433 MAST1Q9Y2H9 1570 aa14.52□□□□□ -0.09
NEDD9-201ENST00000379433 KNSTRNQ9Y448 316 aa14.51□□□□□ -0.09
NEDD9-201ENST00000379433 KDM5CP41229 1560 aa14.51□□□□□ -0.09
NEDD9-201ENST00000379433 ATP10AO60312 1499 aa14.51□□□□□ -0.09
NEDD9-201ENST00000379433 SAMD1Q6SPF0 538 aaPredicted RBP14.51□□□□□ -0.09
NEDD9-201ENST00000379433 PLXNC1O60486 1568 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms