RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 SPRYD3Q8NCJ5 442 aa19.04■□□□□ 0.64
NPHP4-201ENST00000378156 RRP1P56182 461 aaKnown RBP19.04■□□□□ 0.64
NPHP4-201ENST00000378156 NPHP1O15259 732 aa19.04■□□□□ 0.64
NPHP4-201ENST00000378156 ZRSR1Q15695 479 aaKnown RBP19.04■□□□□ 0.64
NPHP4-201ENST00000378156 CSB-PGBD3P0DP91 1061 aa19.02■□□□□ 0.64
NPHP4-201ENST00000378156 HMGXB3Q12766 1538 aa19.02■□□□□ 0.64
NPHP4-201ENST00000378156 NUTM2FA1L443 756 aa19.02■□□□□ 0.63
NPHP4-201ENST00000378156 KCNJ4P48050 445 aa19.01■□□□□ 0.63
NPHP4-201ENST00000378156 CLUAP1Q96AJ1 413 aa19.01■□□□□ 0.63
NPHP4-201ENST00000378156 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.01■□□□□ 0.63
NPHP4-201ENST00000378156 HSP90AB1P08238 724 aaKnown RBP19■□□□□ 0.63
NPHP4-201ENST00000378156 WDR97A6NE52 1622 aa18.99■□□□□ 0.63
NPHP4-201ENST00000378156 POLA1P09884 1462 aaPredicted RBP18.99■□□□□ 0.63
NPHP4-201ENST00000378156 ANKRD50Q9ULJ7 1429 aa18.99■□□□□ 0.63
NPHP4-201ENST00000378156 HFM1A2PYH4 1435 aa18.99■□□□□ 0.63
NPHP4-201ENST00000378156 NBPF8Q3BBV2 869 aa18.99■□□□□ 0.63
NPHP4-201ENST00000378156 BICRAQ9NZM4 1560 aa18.99■□□□□ 0.63
NPHP4-201ENST00000378156 ITPRIPQ8IWB1 547 aa18.99■□□□□ 0.63
NPHP4-201ENST00000378156 RWDD1Q9H446 243 aaPredicted RBP18.98■□□□□ 0.63
NPHP4-201ENST00000378156 FGD1P98174 961 aa18.98■□□□□ 0.63
NPHP4-201ENST00000378156 TOPBP1Q92547 1522 aa18.98■□□□□ 0.63
NPHP4-201ENST00000378156 CHMP4AQ9BY43 222 aa18.98■□□□□ 0.63
NPHP4-201ENST00000378156 EFCAB5A4FU69 1503 aa18.97■□□□□ 0.63
NPHP4-201ENST00000378156 RRP7AQ9Y3A4 280 aaKnown RBP18.97■□□□□ 0.63
NPHP4-201ENST00000378156 EVC2Q86UK5 1308 aa18.97■□□□□ 0.63
NPHP4-201ENST00000378156 CENPJQ9HC77 1338 aaPredicted RBP18.97■□□□□ 0.63
NPHP4-201ENST00000378156 PDE4AP27815 886 aa18.96■□□□□ 0.63
NPHP4-201ENST00000378156 HSCBQ8IWL3 235 aa18.96■□□□□ 0.63
NPHP4-201ENST00000378156 CRBNQ96SW2 442 aa18.96■□□□□ 0.63
NPHP4-201ENST00000378156 SLKQ9H2G2 1235 aaPredicted RBP18.96■□□□□ 0.63
NPHP4-201ENST00000378156 SMC4Q9NTJ3 1288 aa18.96■□□□□ 0.63
NPHP4-201ENST00000378156 AMPHP49418 695 aa18.96■□□□□ 0.63
NPHP4-201ENST00000378156 FAM69CQ0P6D2 419 aa18.95■□□□□ 0.62
NPHP4-201ENST00000378156 APBB1O00213 710 aa18.95■□□□□ 0.62
NPHP4-201ENST00000378156 FANCIQ9NVI1 1328 aa18.95■□□□□ 0.62
NPHP4-201ENST00000378156 STK31Q9BXU1 1019 aa18.95■□□□□ 0.62
NPHP4-201ENST00000378156 TPRNQ4KMQ1 711 aa18.94■□□□□ 0.62
NPHP4-201ENST00000378156 PRDM2Q13029 1718 aa18.94■□□□□ 0.62
NPHP4-201ENST00000378156 CFAP44Q96MT7 982 aa18.94■□□□□ 0.62
NPHP4-201ENST00000378156 CGNL1Q0VF96 1302 aa18.93■□□□□ 0.62
NPHP4-201ENST00000378156 LMOD3Q0VAK6 560 aa18.93■□□□□ 0.62
NPHP4-201ENST00000378156 STAC3Q96MF2 364 aa18.93■□□□□ 0.62
NPHP4-201ENST00000378156 MRC2Q9UBG0 1479 aa18.93■□□□□ 0.62
NPHP4-201ENST00000378156 CC2D2AQ9P2K1 1620 aa18.92■□□□□ 0.62
NPHP4-201ENST00000378156 APAF1O14727 1248 aa18.92■□□□□ 0.62
NPHP4-201ENST00000378156 CCDC184Q52MB2 194 aa18.92■□□□□ 0.62
NPHP4-201ENST00000378156 MINK1Q8N4C8 1332 aaPredicted RBP18.92■□□□□ 0.62
NPHP4-201ENST00000378156 AFAP1Q8N556 730 aa18.91■□□□□ 0.62
NPHP4-201ENST00000378156 PMFBP1Q8TBY8 1022 aa18.91■□□□□ 0.62
NPHP4-201ENST00000378156 PRG4Q92954 1404 aaPredicted RBP18.9■□□□□ 0.62
NPHP4-201ENST00000378156 BCL2L13Q9BXK5 485 aa18.9■□□□□ 0.62
NPHP4-201ENST00000378156 NRDCO43847 1150 aa18.9■□□□□ 0.62
NPHP4-201ENST00000378156 IFT140Q96RY7 1462 aa18.89■□□□□ 0.62
NPHP4-201ENST00000378156 GOLGA6L6A8MZA4 724 aa18.89■□□□□ 0.62
NPHP4-201ENST00000378156 MCCP23508 829 aa18.89■□□□□ 0.62
NPHP4-201ENST00000378156 LTV1Q96GA3 475 aaPredicted RBP18.89■□□□□ 0.62
NPHP4-201ENST00000378156 CHAF1AQ13111 956 aaPredicted RBP18.89■□□□□ 0.61
NPHP4-201ENST00000378156 EHBP1L1Q8N3D4 1523 aa18.89■□□□□ 0.61
NPHP4-201ENST00000378156 MSNP26038 577 aaKnown RBP18.89■□□□□ 0.61
NPHP4-201ENST00000378156 NAIPQ13075 1403 aa18.88■□□□□ 0.61
NPHP4-201ENST00000378156 CENPQQ7L2Z9 268 aaPredicted RBP18.88■□□□□ 0.61
NPHP4-201ENST00000378156 COG3Q96JB2 828 aa18.88■□□□□ 0.61
NPHP4-201ENST00000378156 SLC4A3P48751 1232 aa18.87■□□□□ 0.61
NPHP4-201ENST00000378156 SYNJ2O15056 1496 aa18.87■□□□□ 0.61
NPHP4-201ENST00000378156 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.87■□□□□ 0.61
NPHP4-201ENST00000378156 MIA2Q96PC5 1412 aa18.86■□□□□ 0.61
NPHP4-201ENST00000378156 NAP1L2Q9ULW6 460 aaPredicted RBP18.86■□□□□ 0.61
NPHP4-201ENST00000378156 ZNF330Q9Y3S2 320 aaPredicted RBP18.86■□□□□ 0.61
NPHP4-201ENST00000378156 MFAP1P55081 439 aaKnown RBP18.85■□□□□ 0.61
NPHP4-201ENST00000378156 E9PSI1 815 aa18.85■□□□□ 0.61
NPHP4-201ENST00000378156 TAOK2Q9UL54 1235 aa18.84■□□□□ 0.61
NPHP4-201ENST00000378156 COG6Q9Y2V7 657 aa18.84■□□□□ 0.61
NPHP4-201ENST00000378156 PCF11O94913 1555 aaKnown RBP18.84■□□□□ 0.61
NPHP4-201ENST00000378156 PLCB2Q00722 1185 aa18.83■□□□□ 0.61
NPHP4-201ENST00000378156 NBPF1Q3BBV0 1214 aa18.83■□□□□ 0.61
NPHP4-201ENST00000378156 FAM161AQ3B820 660 aa18.82■□□□□ 0.6
NPHP4-201ENST00000378156 HDAC5Q9UQL6 1122 aa18.82■□□□□ 0.6
NPHP4-201ENST00000378156 SLC4A10Q6U841 1118 aa18.82■□□□□ 0.6
NPHP4-201ENST00000378156 HMMRO75330 724 aa18.82■□□□□ 0.6
NPHP4-201ENST00000378156 KIAA1211Q6ZU35 1233 aa18.82■□□□□ 0.6
NPHP4-201ENST00000378156 CDCA7LQ96GN5 454 aa18.82■□□□□ 0.6
NPHP4-201ENST00000378156 GZF1Q9H116 711 aaPredicted RBP18.82■□□□□ 0.6
NPHP4-201ENST00000378156 BRD4O60885 1362 aaPredicted RBP18.81■□□□□ 0.6
NPHP4-201ENST00000378156 DNMBPQ6XZF7 1577 aa18.81■□□□□ 0.6
NPHP4-201ENST00000378156 PTMSP20962 102 aa18.81■□□□□ 0.6
NPHP4-201ENST00000378156 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.8■□□□□ 0.6
NPHP4-201ENST00000378156 KIAA1107Q9UPP5 1409 aa18.8■□□□□ 0.6
NPHP4-201ENST00000378156 ARHGAP5Q13017 1502 aa18.8■□□□□ 0.6
NPHP4-201ENST00000378156 PEG3Q9GZU2 1588 aa18.79■□□□□ 0.6
NPHP4-201ENST00000378156 ADAMTS8Q9UP79 889 aa18.79■□□□□ 0.6
NPHP4-201ENST00000378156 ABCA10Q8WWZ4 1543 aa18.79■□□□□ 0.6
NPHP4-201ENST00000378156 ELL2O00472 640 aaPredicted RBP18.78■□□□□ 0.6
NPHP4-201ENST00000378156 DAPK1P53355 1430 aa18.78■□□□□ 0.6
NPHP4-201ENST00000378156 CDK13Q14004 1512 aaKnown RBP18.77■□□□□ 0.6
NPHP4-201ENST00000378156 TROQ12816 1431 aaPredicted RBP18.77■□□□□ 0.59
NPHP4-201ENST00000378156 GOLGA6L4A6NEF3 574 aa18.76■□□□□ 0.59
NPHP4-201ENST00000378156 C11orf95C9JLR9 678 aaPredicted RBP18.76■□□□□ 0.59
NPHP4-201ENST00000378156 PNISRQ8TF01 805 aaKnown RBP18.76■□□□□ 0.59
NPHP4-201ENST00000378156 AKNAQ7Z591 1439 aa18.76■□□□□ 0.59
NPHP4-201ENST00000378156 CCDC9Q9Y3X0 531 aaKnown RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms