RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 U2AF1Q01081 240 aaKnown RBP eCLIP15.03■□□□□ -0
PCDHA9-201ENST00000378122 KIF3BO15066 747 aa15.02■□□□□ -0
PCDHA9-201ENST00000378122 WASHC2CQ9Y4E1 1318 aa15.02■□□□□ -0
PCDHA9-201ENST00000378122 KIAA1211Q6ZU35 1233 aa15.02■□□□□ -0
PCDHA9-201ENST00000378122 CNKSR2Q8WXI2 1034 aa15.02□□□□□ -0.01
PCDHA9-201ENST00000378122 MROH2BQ7Z745 1585 aa15.01□□□□□ -0.01
PCDHA9-201ENST00000378122 HDGFL2Q7Z4V5 671 aaPredicted RBP15.01□□□□□ -0.01
PCDHA9-201ENST00000378122 GORABQ5T7V8 394 aa15□□□□□ -0.01
PCDHA9-201ENST00000378122 NGEFQ8N5V2 710 aa14.99□□□□□ -0.01
PCDHA9-201ENST00000378122 SMC4Q9NTJ3 1288 aa14.99□□□□□ -0.01
PCDHA9-201ENST00000378122 NOL8Q76FK4 1167 aaKnown RBP14.99□□□□□ -0.01
PCDHA9-201ENST00000378122 WIZO95785 1651 aa14.99□□□□□ -0.01
PCDHA9-201ENST00000378122 SLC4A3P48751 1232 aa14.99□□□□□ -0.01
PCDHA9-201ENST00000378122 USP35Q9P2H5 1018 aa14.98□□□□□ -0.01
PCDHA9-201ENST00000378122 AMPHP49418 695 aa14.98□□□□□ -0.01
PCDHA9-201ENST00000378122 SYAP1Q96A49 352 aaPredicted RBP14.98□□□□□ -0.01
PCDHA9-201ENST00000378122 HSP90AA2PQ14568 343 aaPredicted RBP14.98□□□□□ -0.01
PCDHA9-201ENST00000378122 CLUAP1Q96AJ1 413 aa14.98□□□□□ -0.01
PCDHA9-201ENST00000378122 RSPH6AQ9H0K4 717 aa14.98□□□□□ -0.01
PCDHA9-201ENST00000378122 NUP155O75694 1391 aa14.97□□□□□ -0.01
PCDHA9-201ENST00000378122 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.97□□□□□ -0.01
PCDHA9-201ENST00000378122 FMN1Q68DA7 1419 aa14.97□□□□□ -0.01
PCDHA9-201ENST00000378122 ATF3P18847 181 aa14.96□□□□□ -0.01
PCDHA9-201ENST00000378122 L3MBTL2Q969R5 705 aa14.96□□□□□ -0.01
PCDHA9-201ENST00000378122 TRIM6-TRIM34B2RNG4 842 aa14.95□□□□□ -0.02
PCDHA9-201ENST00000378122 FOXD4L5Q5VV16 416 aaPredicted RBP14.95□□□□□ -0.02
PCDHA9-201ENST00000378122 FOXD4L4Q8WXT5 416 aaPredicted RBP14.95□□□□□ -0.02
PCDHA9-201ENST00000378122 CENPJQ9HC77 1338 aaPredicted RBP14.95□□□□□ -0.02
PCDHA9-201ENST00000378122 HSP90B1P14625 803 aaKnown RBP14.94□□□□□ -0.02
PCDHA9-201ENST00000378122 GSE1Q14687 1217 aa14.94□□□□□ -0.02
PCDHA9-201ENST00000378122 PLIN1O60240 522 aa14.94□□□□□ -0.02
PCDHA9-201ENST00000378122 CTDP1Q9Y5B0 961 aaPredicted RBP14.94□□□□□ -0.02
PCDHA9-201ENST00000378122 CALD1Q05682 793 aaKnown RBP14.94□□□□□ -0.02
PCDHA9-201ENST00000378122 EIF3AQ14152 1382 aaKnown RBP14.93□□□□□ -0.02
PCDHA9-201ENST00000378122 TNNT3P45378 269 aaPredicted RBP14.93□□□□□ -0.02
PCDHA9-201ENST00000378122 TRIM34Q9BYJ4 488 aa14.93□□□□□ -0.02
PCDHA9-201ENST00000378122 DHX57Q6P158 1386 aaKnown RBP14.92□□□□□ -0.02
PCDHA9-201ENST00000378122 KIF15Q9NS87 1388 aa14.92□□□□□ -0.02
PCDHA9-201ENST00000378122 PDE4AP27815 886 aa14.92□□□□□ -0.02
PCDHA9-201ENST00000378122 TOMM22Q9NS69 142 aa14.92□□□□□ -0.02
PCDHA9-201ENST00000378122 ANKRD30AQ9BXX3 1397 aa14.92□□□□□ -0.02
PCDHA9-201ENST00000378122 CARMIL2Q6F5E8 1435 aa14.91□□□□□ -0.02
PCDHA9-201ENST00000378122 EXOC6Q8TAG9 804 aa14.91□□□□□ -0.02
PCDHA9-201ENST00000378122 EFCAB2Q5VUJ9 269 aa14.91□□□□□ -0.02
PCDHA9-201ENST00000378122 HNRNPMP52272 730 aaKnown RBP eCLIP14.9□□□□□ -0.02
PCDHA9-201ENST00000378122 PSME1Q06323 249 aa14.9□□□□□ -0.02
PCDHA9-201ENST00000378122 TDRD9Q8NDG6 1382 aaKnown RBP14.9□□□□□ -0.02
PCDHA9-201ENST00000378122 PAXIP1Q6ZW49 1069 aaPredicted RBP14.9□□□□□ -0.02
PCDHA9-201ENST00000378122 CRBNQ96SW2 442 aa14.9□□□□□ -0.02
PCDHA9-201ENST00000378122 DDX11L8A8MPP1 907 aa14.9□□□□□ -0.02
PCDHA9-201ENST00000378122 MYBBP1AQ9BQG0 1328 aaKnown RBP14.9□□□□□ -0.02
PCDHA9-201ENST00000378122 FANCIQ9NVI1 1328 aa14.9□□□□□ -0.02
PCDHA9-201ENST00000378122 PDE3BQ13370 1112 aa14.89□□□□□ -0.03
PCDHA9-201ENST00000378122 HTATSF1O43719 755 aaKnown RBP14.89□□□□□ -0.03
PCDHA9-201ENST00000378122 VSIG10Q8N0Z9 540 aa14.89□□□□□ -0.03
PCDHA9-201ENST00000378122 RRP7AQ9Y3A4 280 aaKnown RBP14.89□□□□□ -0.03
PCDHA9-201ENST00000378122 TPM4P67936 248 aa14.89□□□□□ -0.03
PCDHA9-201ENST00000378122 NLRP13Q86W25 1043 aa14.89□□□□□ -0.03
PCDHA9-201ENST00000378122 FHOD3Q2V2M9 1422 aa14.89□□□□□ -0.03
PCDHA9-201ENST00000378122 RRP1P56182 461 aaKnown RBP14.88□□□□□ -0.03
PCDHA9-201ENST00000378122 SLC4A10Q6U841 1118 aa14.88□□□□□ -0.03
PCDHA9-201ENST00000378122 PDS5BQ9NTI5 1447 aa14.88□□□□□ -0.03
PCDHA9-201ENST00000378122 FAM161AQ3B820 660 aa14.88□□□□□ -0.03
PCDHA9-201ENST00000378122 CENPQQ7L2Z9 268 aaPredicted RBP14.88□□□□□ -0.03
PCDHA9-201ENST00000378122 NOC3LQ8WTT2 800 aaKnown RBP14.88□□□□□ -0.03
PCDHA9-201ENST00000378122 RAPGEF2Q9Y4G8 1499 aa14.86□□□□□ -0.03
PCDHA9-201ENST00000378122 TOP2AP11388 1531 aaKnown RBP14.86□□□□□ -0.03
PCDHA9-201ENST00000378122 CSPP1Q1MSJ5 1256 aa14.86□□□□□ -0.03
PCDHA9-201ENST00000378122 GPATCH3Q96I76 525 aa14.86□□□□□ -0.03
PCDHA9-201ENST00000378122 PHLDB1Q86UU1 1377 aa14.85□□□□□ -0.03
PCDHA9-201ENST00000378122 STK31Q9BXU1 1019 aa14.85□□□□□ -0.03
PCDHA9-201ENST00000378122 SMARCA2P51531 1590 aa14.85□□□□□ -0.03
PCDHA9-201ENST00000378122 ST18O60284 1047 aa14.84□□□□□ -0.03
PCDHA9-201ENST00000378122 SPAG9O60271 1321 aaKnown RBP14.84□□□□□ -0.03
PCDHA9-201ENST00000378122 RASSF8Q8NHQ8 419 aa14.84□□□□□ -0.03
PCDHA9-201ENST00000378122 PHF14O94880 888 aa14.84□□□□□ -0.03
PCDHA9-201ENST00000378122 BCL2L13Q9BXK5 485 aa14.83□□□□□ -0.03
PCDHA9-201ENST00000378122 PANK3Q9H999 370 aa14.83□□□□□ -0.03
PCDHA9-201ENST00000378122 HMMRO75330 724 aa14.83□□□□□ -0.04
PCDHA9-201ENST00000378122 ZNF428Q96B54 188 aa14.83□□□□□ -0.04
PCDHA9-201ENST00000378122 STRN4Q9NRL3 753 aa14.83□□□□□ -0.04
PCDHA9-201ENST00000378122 ZBED9Q6R2W3 1325 aa14.83□□□□□ -0.04
PCDHA9-201ENST00000378122 NUTM2GQ5VZR2 741 aa14.83□□□□□ -0.04
PCDHA9-201ENST00000378122 MARCH6O60337 910 aa14.83□□□□□ -0.04
PCDHA9-201ENST00000378122 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.82□□□□□ -0.04
PCDHA9-201ENST00000378122 FOXD4L6Q3SYB3 417 aaPredicted RBP14.81□□□□□ -0.04
PCDHA9-201ENST00000378122 FOXD4L3Q6VB84 417 aaPredicted RBP14.81□□□□□ -0.04
PCDHA9-201ENST00000378122 GOLGA6L1Q8N7Z2 621 aa14.81□□□□□ -0.04
PCDHA9-201ENST00000378122 IBSPP21815 317 aaPredicted RBP14.81□□□□□ -0.04
PCDHA9-201ENST00000378122 C1orf141Q5JVX7 400 aa14.8□□□□□ -0.04
PCDHA9-201ENST00000378122 ANKRD45Q5TZF3 282 aa14.8□□□□□ -0.04
PCDHA9-201ENST00000378122 CCAR1Q8IX12 1150 aaKnown RBP14.8□□□□□ -0.04
PCDHA9-201ENST00000378122 ST20-MTHFSA0A0A6YYL1 179 aa14.8□□□□□ -0.04
PCDHA9-201ENST00000378122 PRKRIP1Q9H875 184 aaPredicted RBP14.8□□□□□ -0.04
PCDHA9-201ENST00000378122 TCEAL9Q9UHQ7 104 aa14.8□□□□□ -0.04
PCDHA9-201ENST00000378122 FAM177BA6PVY3 158 aa14.8□□□□□ -0.04
PCDHA9-201ENST00000378122 NECTIN2Q92692 538 aa14.8□□□□□ -0.04
PCDHA9-201ENST00000378122 DDX49Q9Y6V7 483 aaKnown RBP14.79□□□□□ -0.04
PCDHA9-201ENST00000378122 KIF16BQ96L93 1317 aa14.79□□□□□ -0.04
PCDHA9-201ENST00000378122 RILPL2Q969X0 211 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms