RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 THOC2Q8NI27 1593 aaKnown RBP18.94■□□□□ 0.62
TCOF1-202ENST00000377797 RAPGEF3O95398 923 aa18.94■□□□□ 0.62
TCOF1-202ENST00000377797 EID1Q9Y6B2 187 aa18.94■□□□□ 0.62
TCOF1-202ENST00000377797 ADAMTS12P58397 1594 aa18.93■□□□□ 0.62
TCOF1-202ENST00000377797 B4GALNT3Q6L9W6 998 aa18.93■□□□□ 0.62
TCOF1-202ENST00000377797 TERF2IPQ9NYB0 399 aa18.93■□□□□ 0.62
TCOF1-202ENST00000377797 FRAT1Q92837 279 aaPredicted RBP18.92■□□□□ 0.62
TCOF1-202ENST00000377797 UPF2Q9HAU5 1272 aaKnown RBP18.92■□□□□ 0.62
TCOF1-202ENST00000377797 MYBBP1AQ9BQG0 1328 aaKnown RBP18.91■□□□□ 0.62
TCOF1-202ENST00000377797 U2AF1L5P0DN76 240 aaPredicted RBP18.91■□□□□ 0.62
TCOF1-202ENST00000377797 U2AF1Q01081 240 aaKnown RBP eCLIP18.91■□□□□ 0.62
TCOF1-202ENST00000377797 CCDC141Q6ZP82 1450 aa18.91■□□□□ 0.62
TCOF1-202ENST00000377797 PNNQ9H307 717 aaKnown RBP18.91■□□□□ 0.62
TCOF1-202ENST00000377797 CTTNBP2Q8WZ74 1663 aa18.9■□□□□ 0.62
TCOF1-202ENST00000377797 NCOA1Q15788 1441 aa18.9■□□□□ 0.62
TCOF1-202ENST00000377797 NUP153P49790 1475 aaKnown RBP18.89■□□□□ 0.62
TCOF1-202ENST00000377797 NBPF1Q3BBV0 1214 aa18.89■□□□□ 0.61
TCOF1-202ENST00000377797 AKNAQ7Z591 1439 aa18.89■□□□□ 0.61
TCOF1-202ENST00000377797 KIF14Q15058 1648 aa18.89■□□□□ 0.61
TCOF1-202ENST00000377797 FTSJ3Q8IY81 847 aaKnown RBP18.88■□□□□ 0.61
TCOF1-202ENST00000377797 UGGT2Q9NYU1 1516 aa18.88■□□□□ 0.61
TCOF1-202ENST00000377797 WDR62O43379 1518 aa18.87■□□□□ 0.61
TCOF1-202ENST00000377797 HAP1P54257 671 aaPredicted RBP18.87■□□□□ 0.61
TCOF1-202ENST00000377797 WDR97A6NE52 1622 aa18.87■□□□□ 0.61
TCOF1-202ENST00000377797 ATP10BO94823 1461 aa18.87■□□□□ 0.61
TCOF1-202ENST00000377797 CFAP70Q5T0N1 1121 aa18.86■□□□□ 0.61
TCOF1-202ENST00000377797 GPATCH8Q9UKJ3 1502 aaKnown RBP18.86■□□□□ 0.61
TCOF1-202ENST00000377797 MYH16Q9H6N6 1097 aa18.85■□□□□ 0.61
TCOF1-202ENST00000377797 PTPRKQ15262 1439 aa18.85■□□□□ 0.61
TCOF1-202ENST00000377797 NUTM2FA1L443 756 aa18.85■□□□□ 0.61
TCOF1-202ENST00000377797 EIF4G3O43432 1585 aaKnown RBP18.85■□□□□ 0.61
TCOF1-202ENST00000377797 EVC2Q86UK5 1308 aa18.85■□□□□ 0.61
TCOF1-202ENST00000377797 MINK1Q8N4C8 1332 aaPredicted RBP18.85■□□□□ 0.61
TCOF1-202ENST00000377797 RAPGEF6Q8TEU7 1601 aa18.84■□□□□ 0.61
TCOF1-202ENST00000377797 ANKRD30BQ9BXX2 1392 aa18.84■□□□□ 0.61
TCOF1-202ENST00000377797 TMEM132EQ6IEE7 984 aa18.83■□□□□ 0.61
TCOF1-202ENST00000377797 CENPJQ9HC77 1338 aaPredicted RBP18.83■□□□□ 0.61
TCOF1-202ENST00000377797 RCAN3Q9UKA8 241 aa18.83■□□□□ 0.61
TCOF1-202ENST00000377797 CNTLNQ9NXG0 1405 aa18.83■□□□□ 0.6
TCOF1-202ENST00000377797 ABCA5Q8WWZ7 1642 aa18.82■□□□□ 0.6
TCOF1-202ENST00000377797 CCDC146Q8IYE0 955 aa18.82■□□□□ 0.6
TCOF1-202ENST00000377797 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.81■□□□□ 0.6
TCOF1-202ENST00000377797 CD109Q6YHK3 1445 aa18.8■□□□□ 0.6
TCOF1-202ENST00000377797 PAK3O75914 559 aaPredicted RBP18.8■□□□□ 0.6
TCOF1-202ENST00000377797 KIAA0556O60303 1618 aa18.8■□□□□ 0.6
TCOF1-202ENST00000377797 A0A0G2JS52 829 aa18.78■□□□□ 0.6
TCOF1-202ENST00000377797 CGNL1Q0VF96 1302 aa18.77■□□□□ 0.59
TCOF1-202ENST00000377797 GOLGA2Q08379 1002 aa18.77■□□□□ 0.59
TCOF1-202ENST00000377797 NGDNQ8NEJ9 315 aaKnown RBP18.76■□□□□ 0.59
TCOF1-202ENST00000377797 NUP160Q12769 1436 aa18.76■□□□□ 0.59
TCOF1-202ENST00000377797 PDE3BQ13370 1112 aa18.76■□□□□ 0.59
TCOF1-202ENST00000377797 ADGRL1O94910 1474 aa18.75■□□□□ 0.59
TCOF1-202ENST00000377797 HSP90AA1P07900 732 aaKnown RBP18.75■□□□□ 0.59
TCOF1-202ENST00000377797 RGS3P49796 1198 aa18.74■□□□□ 0.59
TCOF1-202ENST00000377797 DISP1Q96F81 1524 aa18.74■□□□□ 0.59
TCOF1-202ENST00000377797 ZBED9Q6R2W3 1325 aa18.74■□□□□ 0.59
TCOF1-202ENST00000377797 MS4A1P11836 297 aa18.73■□□□□ 0.59
TCOF1-202ENST00000377797 ERICH6BQ5W0A0 696 aa18.73■□□□□ 0.59
TCOF1-202ENST00000377797 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.72■□□□□ 0.59
TCOF1-202ENST00000377797 TARBP1Q13395 1621 aaKnown RBP18.71■□□□□ 0.59
TCOF1-202ENST00000377797 PBRM1Q86U86 1689 aa18.71■□□□□ 0.59
TCOF1-202ENST00000377797 SLC52A1Q9NWF4 448 aa18.71■□□□□ 0.59
TCOF1-202ENST00000377797 CFAP43Q8NDM7 1665 aa18.7■□□□□ 0.58
TCOF1-202ENST00000377797 FANCAO15360 1455 aa18.69■□□□□ 0.58
TCOF1-202ENST00000377797 RRP7AQ9Y3A4 280 aaKnown RBP18.69■□□□□ 0.58
TCOF1-202ENST00000377797 RTF1Q92541 710 aaKnown RBP18.68■□□□□ 0.58
TCOF1-202ENST00000377797 CABP2Q9NPB3 220 aa18.67■□□□□ 0.58
TCOF1-202ENST00000377797 RPRD2Q5VT52 1461 aaKnown RBP18.66■□□□□ 0.58
TCOF1-202ENST00000377797 PLCH2O75038 1416 aa18.66■□□□□ 0.58
TCOF1-202ENST00000377797 APAF1O14727 1248 aa18.66■□□□□ 0.58
TCOF1-202ENST00000377797 ERBINQ96RT1 1412 aa18.65■□□□□ 0.58
TCOF1-202ENST00000377797 MAPKBP1O60336 1514 aa18.65■□□□□ 0.58
TCOF1-202ENST00000377797 C11orf95C9JLR9 678 aaPredicted RBP18.64■□□□□ 0.57
TCOF1-202ENST00000377797 CALD1Q05682 793 aaKnown RBP18.64■□□□□ 0.57
TCOF1-202ENST00000377797 TCOF1Q13428 1488 aaKnown RBP18.64■□□□□ 0.57
TCOF1-202ENST00000377797 CHMP4BQ9H444 224 aaKnown RBP18.64■□□□□ 0.57
TCOF1-202ENST00000377797 COG3Q96JB2 828 aa18.64■□□□□ 0.57
TCOF1-202ENST00000377797 SAMD9Q5K651 1589 aa18.63■□□□□ 0.57
TCOF1-202ENST00000377797 AMPHP49418 695 aa18.62■□□□□ 0.57
TCOF1-202ENST00000377797 ASXL2Q76L83 1435 aa18.62■□□□□ 0.57
TCOF1-202ENST00000377797 IPO8O15397 1037 aaKnown RBP18.6■□□□□ 0.57
TCOF1-202ENST00000377797 GGNBP2Q9H3C7 697 aa18.6■□□□□ 0.57
TCOF1-202ENST00000377797 BRD4O60885 1362 aaPredicted RBP18.6■□□□□ 0.57
TCOF1-202ENST00000377797 NBR1Q14596 966 aa18.6■□□□□ 0.57
TCOF1-202ENST00000377797 PRAM1Q96QH2 718 aa18.6■□□□□ 0.57
TCOF1-202ENST00000377797 SLC12A5Q9H2X9 1139 aa18.6■□□□□ 0.57
TCOF1-202ENST00000377797 ARXQ96QS3 562 aa18.59■□□□□ 0.57
TCOF1-202ENST00000377797 RPGRIP1LQ68CZ1 1315 aa18.59■□□□□ 0.57
TCOF1-202ENST00000377797 ITSN2Q9NZM3 1697 aa18.58■□□□□ 0.57
TCOF1-202ENST00000377797 TXNDC2Q86VQ3 553 aa18.58■□□□□ 0.57
TCOF1-202ENST00000377797 DHX29Q7Z478 1369 aaKnown RBP18.58■□□□□ 0.57
TCOF1-202ENST00000377797 LTV1Q96GA3 475 aaPredicted RBP18.58■□□□□ 0.56
TCOF1-202ENST00000377797 CCDC184Q52MB2 194 aa18.58■□□□□ 0.56
TCOF1-202ENST00000377797 SYCP2Q9BX26 1530 aa18.57■□□□□ 0.56
TCOF1-202ENST00000377797 CLUAP1Q96AJ1 413 aa18.57■□□□□ 0.56
TCOF1-202ENST00000377797 SMC4Q9NTJ3 1288 aa18.57■□□□□ 0.56
TCOF1-202ENST00000377797 CEP170Q5SW79 1584 aa18.57■□□□□ 0.56
TCOF1-202ENST00000377797 DENND4BO75064 1496 aaPredicted RBP18.56■□□□□ 0.56
TCOF1-202ENST00000377797 ADAMTS8Q9UP79 889 aa18.56■□□□□ 0.56
TCOF1-202ENST00000377797 DDRGK1Q96HY6 314 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms