RNA–Protein interactions for RNA: ENST00000376259.6

TNFRSF1B-201, Transcript of TNF receptor superfamily member 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1B, Length 3,683 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-201ENST00000376259 UPF2Q9HAU5 1272 aaKnown RBP18.65■□□□□ 0.58
TNFRSF1B-201ENST00000376259 COG6Q9Y2V7 657 aa18.65■□□□□ 0.58
TNFRSF1B-201ENST00000376259 MAGI3Q5TCQ9 1506 aa18.65■□□□□ 0.58
TNFRSF1B-201ENST00000376259 CFAP43Q8NDM7 1665 aa18.65■□□□□ 0.58
TNFRSF1B-201ENST00000376259 KDM6BO15054 1643 aa18.65■□□□□ 0.58
TNFRSF1B-201ENST00000376259 GGT6Q6P531 493 aa18.64■□□□□ 0.57
TNFRSF1B-201ENST00000376259 PDE3BQ13370 1112 aa18.63■□□□□ 0.57
TNFRSF1B-201ENST00000376259 TRAK1Q9UPV9 953 aa18.63■□□□□ 0.57
TNFRSF1B-201ENST00000376259 UGGT2Q9NYU1 1516 aa18.62■□□□□ 0.57
TNFRSF1B-201ENST00000376259 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
TNFRSF1B-201ENST00000376259 STK26Q9P289 416 aa18.62■□□□□ 0.57
TNFRSF1B-201ENST00000376259 SLC24A1O60721 1099 aa18.61■□□□□ 0.57
TNFRSF1B-201ENST00000376259 BCAR3O75815 825 aa18.61■□□□□ 0.57
TNFRSF1B-201ENST00000376259 CDCA8Q53HL2 280 aa18.61■□□□□ 0.57
TNFRSF1B-201ENST00000376259 MORC1Q86VD1 984 aa18.61■□□□□ 0.57
TNFRSF1B-201ENST00000376259 AFAP1Q8N556 730 aa18.61■□□□□ 0.57
TNFRSF1B-201ENST00000376259 BRD4O60885 1362 aaPredicted RBP18.6■□□□□ 0.57
TNFRSF1B-201ENST00000376259 BACH2Q9BYV9 841 aa18.6■□□□□ 0.57
TNFRSF1B-201ENST00000376259 GZF1Q9H116 711 aaPredicted RBP18.6■□□□□ 0.57
TNFRSF1B-201ENST00000376259 TROQ12816 1431 aaPredicted RBP18.59■□□□□ 0.57
TNFRSF1B-201ENST00000376259 HSP90AA1P07900 732 aaKnown RBP18.59■□□□□ 0.57
TNFRSF1B-201ENST00000376259 HECW1Q76N89 1606 aa18.59■□□□□ 0.57
TNFRSF1B-201ENST00000376259 PANK1Q8TE04 598 aa18.59■□□□□ 0.57
TNFRSF1B-201ENST00000376259 C9orf84Q5VXU9 1444 aa18.58■□□□□ 0.57
TNFRSF1B-201ENST00000376259 PTPRGP23470 1445 aa18.58■□□□□ 0.57
TNFRSF1B-201ENST00000376259 FTSJ3Q8IY81 847 aaKnown RBP18.58■□□□□ 0.56
TNFRSF1B-201ENST00000376259 CUL7Q14999 1698 aa18.58■□□□□ 0.56
TNFRSF1B-201ENST00000376259 IQGAP2Q13576 1575 aa18.58■□□□□ 0.56
TNFRSF1B-201ENST00000376259 ANO8Q9HCE9 1232 aaPredicted RBP18.58■□□□□ 0.56
TNFRSF1B-201ENST00000376259 DHX29Q7Z478 1369 aaKnown RBP18.57■□□□□ 0.56
TNFRSF1B-201ENST00000376259 BRPF3Q9ULD4 1205 aa18.57■□□□□ 0.56
TNFRSF1B-201ENST00000376259 ARHGEF11O15085 1522 aa18.56■□□□□ 0.56
TNFRSF1B-201ENST00000376259 U2AF1L5P0DN76 240 aaPredicted RBP18.55■□□□□ 0.56
TNFRSF1B-201ENST00000376259 U2AF1Q01081 240 aaKnown RBP eCLIP18.55■□□□□ 0.56
TNFRSF1B-201ENST00000376259 PPP2R1AP30153 589 aa18.55■□□□□ 0.56
TNFRSF1B-201ENST00000376259 STAG3Q9UJ98 1225 aa18.55■□□□□ 0.56
TNFRSF1B-201ENST00000376259 CAMSAP2Q08AD1 1489 aa18.55■□□□□ 0.56
TNFRSF1B-201ENST00000376259 ROCK1Q13464 1354 aa18.55■□□□□ 0.56
TNFRSF1B-201ENST00000376259 CFAP70Q5T0N1 1121 aa18.54■□□□□ 0.56
TNFRSF1B-201ENST00000376259 EFCAB2Q5VUJ9 269 aa18.54■□□□□ 0.56
TNFRSF1B-201ENST00000376259 NFKBIBQ15653 356 aa18.53■□□□□ 0.56
TNFRSF1B-201ENST00000376259 SPAG9O60271 1321 aaKnown RBP18.52■□□□□ 0.56
TNFRSF1B-201ENST00000376259 FAM161AQ3B820 660 aa18.51■□□□□ 0.55
TNFRSF1B-201ENST00000376259 TMEM132EQ6IEE7 984 aa18.51■□□□□ 0.55
TNFRSF1B-201ENST00000376259 FRAT2O75474 233 aaPredicted RBP18.5■□□□□ 0.55
TNFRSF1B-201ENST00000376259 ARID4BQ4LE39 1312 aaPredicted RBP18.5■□□□□ 0.55
TNFRSF1B-201ENST00000376259 BECN1Q14457 450 aa18.5■□□□□ 0.55
TNFRSF1B-201ENST00000376259 CENPQQ7L2Z9 268 aaPredicted RBP18.5■□□□□ 0.55
TNFRSF1B-201ENST00000376259 DISP3Q9P2K9 1392 aa18.49■□□□□ 0.55
TNFRSF1B-201ENST00000376259 CENPJQ9HC77 1338 aaPredicted RBP18.49■□□□□ 0.55
TNFRSF1B-201ENST00000376259 CTTNBP2Q8WZ74 1663 aa18.48■□□□□ 0.55
TNFRSF1B-201ENST00000376259 NUP153P49790 1475 aaKnown RBP18.48■□□□□ 0.55
TNFRSF1B-201ENST00000376259 DENND4BO75064 1496 aaPredicted RBP18.48■□□□□ 0.55
TNFRSF1B-201ENST00000376259 PLEKHG5O94827 1062 aa18.47■□□□□ 0.55
TNFRSF1B-201ENST00000376259 SRPK2P78362 688 aaKnown RBP18.47■□□□□ 0.55
TNFRSF1B-201ENST00000376259 CFAP53Q96M91 514 aa18.47■□□□□ 0.55
TNFRSF1B-201ENST00000376259 MS4A1P11836 297 aa18.47■□□□□ 0.55
TNFRSF1B-201ENST00000376259 GSE1Q14687 1217 aa18.47■□□□□ 0.55
TNFRSF1B-201ENST00000376259 NPM1P06748 294 aaKnown RBP eCLIP18.46■□□□□ 0.55
TNFRSF1B-201ENST00000376259 MFAP1P55081 439 aaKnown RBP18.46■□□□□ 0.55
TNFRSF1B-201ENST00000376259 GPATCH8Q9UKJ3 1502 aaKnown RBP18.46■□□□□ 0.55
TNFRSF1B-201ENST00000376259 TEX14Q8IWB6 1497 aa18.46■□□□□ 0.54
TNFRSF1B-201ENST00000376259 FOXD4L1Q9NU39 408 aa18.45■□□□□ 0.54
TNFRSF1B-201ENST00000376259 KIAA0586Q9BVV6 1533 aa18.45■□□□□ 0.54
TNFRSF1B-201ENST00000376259 LAMC3Q9Y6N6 1575 aa18.44■□□□□ 0.54
TNFRSF1B-201ENST00000376259 ELL2O00472 640 aaPredicted RBP18.44■□□□□ 0.54
TNFRSF1B-201ENST00000376259 SOX12O15370 315 aa18.44■□□□□ 0.54
TNFRSF1B-201ENST00000376259 PZPP20742 1482 aa18.43■□□□□ 0.54
TNFRSF1B-201ENST00000376259 TPRNQ4KMQ1 711 aa18.43■□□□□ 0.54
TNFRSF1B-201ENST00000376259 ITPRIPQ8IWB1 547 aa18.43■□□□□ 0.54
TNFRSF1B-201ENST00000376259 SLC12A5Q9H2X9 1139 aa18.43■□□□□ 0.54
TNFRSF1B-201ENST00000376259 SPATA31E1Q6ZUB1 1445 aa18.42■□□□□ 0.54
TNFRSF1B-201ENST00000376259 RSPH4AQ5TD94 716 aa18.42■□□□□ 0.54
TNFRSF1B-201ENST00000376259 APBB1O00213 710 aa18.42■□□□□ 0.54
TNFRSF1B-201ENST00000376259 TCOF1Q13428 1488 aaKnown RBP18.41■□□□□ 0.54
TNFRSF1B-201ENST00000376259 MAPK8IP3Q9UPT6 1336 aa18.41■□□□□ 0.54
TNFRSF1B-201ENST00000376259 POGKQ9P215 609 aa18.4■□□□□ 0.54
TNFRSF1B-201ENST00000376259 MRC2Q9UBG0 1479 aa18.4■□□□□ 0.54
TNFRSF1B-201ENST00000376259 SMC4Q9NTJ3 1288 aa18.39■□□□□ 0.54
TNFRSF1B-201ENST00000376259 PER1O15534 1290 aaPredicted RBP18.39■□□□□ 0.53
TNFRSF1B-201ENST00000376259 SPINK5Q9NQ38 1064 aaPredicted RBP18.39■□□□□ 0.53
TNFRSF1B-201ENST00000376259 ERBINQ96RT1 1412 aa18.39■□□□□ 0.53
TNFRSF1B-201ENST00000376259 DUSP27Q5VZP5 1158 aa18.38■□□□□ 0.53
TNFRSF1B-201ENST00000376259 E9PSI1 815 aa18.37■□□□□ 0.53
TNFRSF1B-201ENST00000376259 TESK2Q96S53 571 aa18.37■□□□□ 0.53
TNFRSF1B-201ENST00000376259 KDM5BQ9UGL1 1544 aa18.37■□□□□ 0.53
TNFRSF1B-201ENST00000376259 MTHFSP49914 203 aa18.36■□□□□ 0.53
TNFRSF1B-201ENST00000376259 TCP11L2Q8N4U5 519 aa18.36■□□□□ 0.53
TNFRSF1B-201ENST00000376259 TSR2Q969E8 191 aaKnown RBP18.35■□□□□ 0.53
TNFRSF1B-201ENST00000376259 GRIN2AQ12879 1464 aa18.35■□□□□ 0.53
TNFRSF1B-201ENST00000376259 ARHGAP5Q13017 1502 aa18.35■□□□□ 0.53
TNFRSF1B-201ENST00000376259 KANK1Q14678 1352 aa18.35■□□□□ 0.53
TNFRSF1B-201ENST00000376259 MLECQ14165 292 aa18.35■□□□□ 0.53
TNFRSF1B-201ENST00000376259 USP35Q9P2H5 1018 aa18.34■□□□□ 0.53
TNFRSF1B-201ENST00000376259 TNNQ9UQP3 1299 aa18.34■□□□□ 0.53
TNFRSF1B-201ENST00000376259 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.34■□□□□ 0.53
TNFRSF1B-201ENST00000376259 WDR62O43379 1518 aa18.33■□□□□ 0.53
TNFRSF1B-201ENST00000376259 NCLP19338 710 aaKnown RBP18.33■□□□□ 0.53
TNFRSF1B-201ENST00000376259 PLEKHH2Q8IVE3 1493 aa18.33■□□□□ 0.52
TNFRSF1B-201ENST00000376259 MAGI1Q96QZ7 1491 aaPredicted RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms