RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 KTN1Q86UP2 1357 aaKnown RBP21.92■■□□□ 1.1
SDC4-201ENST00000372733 ZBTB47Q9UFB7 747 aaPredicted RBP21.92■■□□□ 1.1
SDC4-201ENST00000372733 ABCC10Q5T3U5 1492 aa21.91■■□□□ 1.1
SDC4-201ENST00000372733 RCAN3Q9UKA8 241 aa21.9■■□□□ 1.1
SDC4-201ENST00000372733 CHMP7Q8WUX9 453 aaPredicted RBP21.89■■□□□ 1.09
SDC4-201ENST00000372733 PTPRGP23470 1445 aa21.88■■□□□ 1.09
SDC4-201ENST00000372733 FBLN2P98095 1184 aa21.87■■□□□ 1.09
SDC4-201ENST00000372733 NPM2Q86SE8 214 aaKnown RBP21.87■■□□□ 1.09
SDC4-201ENST00000372733 CARMIL2Q6F5E8 1435 aa21.87■■□□□ 1.09
SDC4-201ENST00000372733 PLEKHD1A6NEE1 506 aa21.87■■□□□ 1.09
SDC4-201ENST00000372733 NLRP13Q86W25 1043 aa21.87■■□□□ 1.09
SDC4-201ENST00000372733 MAGI1Q96QZ7 1491 aaPredicted RBP21.87■■□□□ 1.09
SDC4-201ENST00000372733 TSPY4P0CV99 314 aa21.86■■□□□ 1.09
SDC4-201ENST00000372733 TSPY10P0CW01 314 aa21.86■■□□□ 1.09
SDC4-201ENST00000372733 PARD3Q8TEW0 1356 aa21.86■■□□□ 1.09
SDC4-201ENST00000372733 HNRNPMP52272 730 aaKnown RBP eCLIP21.85■■□□□ 1.09
SDC4-201ENST00000372733 SYNJ2O15056 1496 aa21.84■■□□□ 1.09
SDC4-201ENST00000372733 ABCA8O94911 1581 aa21.84■■□□□ 1.09
SDC4-201ENST00000372733 RTL5Q5HYW3 569 aaPredicted RBP21.83■■□□□ 1.09
SDC4-201ENST00000372733 JPH4Q96JJ6 628 aa21.83■■□□□ 1.09
SDC4-201ENST00000372733 ATP10BO94823 1461 aa21.83■■□□□ 1.08
SDC4-201ENST00000372733 CDCA7LQ96GN5 454 aa21.82■■□□□ 1.08
SDC4-201ENST00000372733 PRAG1Q86YV5 1406 aa21.82■■□□□ 1.08
SDC4-201ENST00000372733 TRPM1Q7Z4N2 1603 aa21.82■■□□□ 1.08
SDC4-201ENST00000372733 FAM135AQ9P2D6 1515 aa21.81■■□□□ 1.08
SDC4-201ENST00000372733 TCERG1O14776 1098 aaKnown RBP21.81■■□□□ 1.08
SDC4-201ENST00000372733 NBPF1Q3BBV0 1214 aa21.79■■□□□ 1.08
SDC4-201ENST00000372733 PDE4AP27815 886 aa21.78■■□□□ 1.08
SDC4-201ENST00000372733 PDE3BQ13370 1112 aa21.78■■□□□ 1.08
SDC4-201ENST00000372733 RGL3Q3MIN7 710 aa21.78■■□□□ 1.08
SDC4-201ENST00000372733 ARHGEF5Q12774 1597 aa21.78■■□□□ 1.08
SDC4-201ENST00000372733 NUP160Q12769 1436 aa21.78■■□□□ 1.08
SDC4-201ENST00000372733 CCDC144AA2RUR9 1427 aa21.77■■□□□ 1.08
SDC4-201ENST00000372733 PER1O15534 1290 aaPredicted RBP21.77■■□□□ 1.08
SDC4-201ENST00000372733 CC2D1BQ5T0F9 858 aaKnown RBP21.76■■□□□ 1.07
SDC4-201ENST00000372733 PLIN1O60240 522 aa21.76■■□□□ 1.07
SDC4-201ENST00000372733 COL17A1Q9UMD9 1497 aaPredicted RBP21.76■■□□□ 1.07
SDC4-201ENST00000372733 DISP3Q9P2K9 1392 aa21.75■■□□□ 1.07
SDC4-201ENST00000372733 BACH2Q9BYV9 841 aa21.74■■□□□ 1.07
SDC4-201ENST00000372733 CCDC141Q6ZP82 1450 aa21.74■■□□□ 1.07
SDC4-201ENST00000372733 SAMD9LQ8IVG5 1584 aa21.73■■□□□ 1.07
SDC4-201ENST00000372733 A2MP01023 1474 aa21.73■■□□□ 1.07
SDC4-201ENST00000372733 SKAP1Q86WV1 359 aa21.73■■□□□ 1.07
SDC4-201ENST00000372733 LAS1LQ9Y4W2 734 aaKnown RBP21.72■■□□□ 1.07
SDC4-201ENST00000372733 BLMP54132 1417 aaPredicted RBP21.72■■□□□ 1.07
SDC4-201ENST00000372733 GPRASP1Q5JY77 1395 aa21.71■■□□□ 1.07
SDC4-201ENST00000372733 PLA2R1Q13018 1463 aa21.71■■□□□ 1.07
SDC4-201ENST00000372733 MS4A1P11836 297 aa21.7■■□□□ 1.06
SDC4-201ENST00000372733 TESK2Q96S53 571 aa21.7■■□□□ 1.06
SDC4-201ENST00000372733 CRBNQ96SW2 442 aa21.7■■□□□ 1.06
SDC4-201ENST00000372733 ERCC6Q03468 1493 aa21.69■■□□□ 1.06
SDC4-201ENST00000372733 PRDM15P57071 1507 aaPredicted RBP21.69■■□□□ 1.06
SDC4-201ENST00000372733 PANK3Q9H999 370 aa21.68■■□□□ 1.06
SDC4-201ENST00000372733 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.68■■□□□ 1.067e-8■■□□□ 14
SDC4-201ENST00000372733 ERBINQ96RT1 1412 aa21.67■■□□□ 1.06
SDC4-201ENST00000372733 CDC42BPBQ9Y5S2 1711 aa21.67■■□□□ 1.06
SDC4-201ENST00000372733 PREX2Q70Z35 1606 aa21.66■■□□□ 1.06
SDC4-201ENST00000372733 LAMC1P11047 1609 aa21.65■■□□□ 1.06
SDC4-201ENST00000372733 SYCP2Q9BX26 1530 aa21.64■■□□□ 1.06
SDC4-201ENST00000372733 UNC13BO14795 1591 aa21.64■■□□□ 1.06
SDC4-201ENST00000372733 WASHC2CQ9Y4E1 1318 aa21.64■■□□□ 1.05
SDC4-201ENST00000372733 NEFMP07197 916 aa21.63■■□□□ 1.05
SDC4-201ENST00000372733 MYO5CQ9NQX4 1742 aa21.63■■□□□ 1.05
SDC4-201ENST00000372733 ZMYM4Q5VZL5 1548 aa21.63■■□□□ 1.05
SDC4-201ENST00000372733 C20orf194Q5TEA3 1177 aa21.62■■□□□ 1.05
SDC4-201ENST00000372733 INSRP06213 1382 aa21.62■■□□□ 1.05
SDC4-201ENST00000372733 PLEKHH2Q8IVE3 1493 aa21.61■■□□□ 1.05
SDC4-201ENST00000372733 TMF1P82094 1093 aa21.59■■□□□ 1.05
SDC4-201ENST00000372733 EIF2AK4Q9P2K8 1649 aaKnown RBP21.59■■□□□ 1.05
SDC4-201ENST00000372733 ADAMTS8Q9UP79 889 aa21.58■■□□□ 1.04
SDC4-201ENST00000372733 IQGAP3Q86VI3 1631 aa21.57■■□□□ 1.04
SDC4-201ENST00000372733 ARHGAP5Q13017 1502 aa21.56■■□□□ 1.04
SDC4-201ENST00000372733 RSPH4AQ5TD94 716 aa21.56■■□□□ 1.04
SDC4-201ENST00000372733 TTC37Q6PGP7 1564 aa21.56■■□□□ 1.04
SDC4-201ENST00000372733 MAST1Q9Y2H9 1570 aa21.56■■□□□ 1.04
SDC4-201ENST00000372733 PLEKHH1Q9ULM0 1364 aa21.55■■□□□ 1.04
SDC4-201ENST00000372733 MAGI2Q86UL8 1455 aa21.53■■□□□ 1.04
SDC4-201ENST00000372733 RNF17Q9BXT8 1623 aaKnown RBP21.53■■□□□ 1.04
SDC4-201ENST00000372733 KDM2BQ8NHM5 1336 aa21.53■■□□□ 1.04
SDC4-201ENST00000372733 IL27Q8NEV9 243 aa21.53■■□□□ 1.04
SDC4-201ENST00000372733 USP35Q9P2H5 1018 aa21.53■■□□□ 1.04
SDC4-201ENST00000372733 PPM1GO15355 546 aaPredicted RBP21.52■■□□□ 1.04
SDC4-201ENST00000372733 WDR7Q9Y4E6 1490 aa21.51■■□□□ 1.03
SDC4-201ENST00000372733 PLXNC1O60486 1568 aa21.5■■□□□ 1.03
SDC4-201ENST00000372733 DDRGK1Q96HY6 314 aa21.5■■□□□ 1.03
SDC4-201ENST00000372733 PPP2R1AP30153 589 aa21.5■■□□□ 1.03
SDC4-201ENST00000372733 DUSP27Q5VZP5 1158 aa21.5■■□□□ 1.03
SDC4-201ENST00000372733 WDR43Q15061 677 aaKnown RBP eCLIP21.49■■□□□ 1.03
SDC4-201ENST00000372733 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.48■■□□□ 1.03
SDC4-201ENST00000372733 ATP10AO60312 1499 aa21.48■■□□□ 1.03
SDC4-201ENST00000372733 KNSTRNQ9Y448 316 aa21.47■■□□□ 1.03
SDC4-201ENST00000372733 SLC4A3P48751 1232 aa21.47■■□□□ 1.03
SDC4-201ENST00000372733 CENPQQ7L2Z9 268 aaPredicted RBP21.46■■□□□ 1.03
SDC4-201ENST00000372733 DUOX2Q9NRD8 1548 aa21.45■■□□□ 1.02
SDC4-201ENST00000372733 AMER1Q5JTC6 1135 aaPredicted RBP21.45■■□□□ 1.02
SDC4-201ENST00000372733 ZNF521Q96K83 1311 aa21.45■■□□□ 1.02
SDC4-201ENST00000372733 RTN4Q9NQC3 1192 aaKnown RBP21.43■■□□□ 1.02
SDC4-201ENST00000372733 MADDQ8WXG6 1647 aa21.43■■□□□ 1.02
SDC4-201ENST00000372733 GOLGA2Q08379 1002 aa21.43■■□□□ 1.02
SDC4-201ENST00000372733 IQGAP1P46940 1657 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms