RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 RAD21O60216 631 aa12.4□□□□□ -0.42
COL4A6-202ENST00000372216 TAF7LQ5H9L4 462 aa12.4□□□□□ -0.42
COL4A6-202ENST00000372216 UACAQ9BZF9 1416 aa12.4□□□□□ -0.42
COL4A6-202ENST00000372216 ITPRIPQ8IWB1 547 aa12.39□□□□□ -0.43
COL4A6-202ENST00000372216 MCCP23508 829 aa12.39□□□□□ -0.43
COL4A6-202ENST00000372216 AQRO60306 1485 aaKnown RBP eCLIP12.39□□□□□ -0.43
COL4A6-202ENST00000372216 GORABQ5T7V8 394 aa12.38□□□□□ -0.43
COL4A6-202ENST00000372216 CCDC146Q8IYE0 955 aa12.38□□□□□ -0.43
COL4A6-202ENST00000372216 STK31Q9BXU1 1019 aa12.38□□□□□ -0.43
COL4A6-202ENST00000372216 FBXW7Q969H0 707 aa12.37□□□□□ -0.43
COL4A6-202ENST00000372216 FRAT2O75474 233 aaPredicted RBP12.37□□□□□ -0.43
COL4A6-202ENST00000372216 NOL8Q76FK4 1167 aaKnown RBP12.36□□□□□ -0.43
COL4A6-202ENST00000372216 VGFO15240 615 aaPredicted RBP12.35□□□□□ -0.43
COL4A6-202ENST00000372216 KIAA2012Q0VF49 1180 aa12.35□□□□□ -0.43
COL4A6-202ENST00000372216 GTF2E1P29083 439 aaPredicted RBP12.35□□□□□ -0.43
COL4A6-202ENST00000372216 HSCBQ8IWL3 235 aa12.35□□□□□ -0.43
COL4A6-202ENST00000372216 TOMM22Q9NS69 142 aa12.34□□□□□ -0.43
COL4A6-202ENST00000372216 EVA1CP58658 441 aa12.34□□□□□ -0.43
COL4A6-202ENST00000372216 SAMD1Q6SPF0 538 aaPredicted RBP12.34□□□□□ -0.43
COL4A6-202ENST00000372216 CHMP4AQ9BY43 222 aa12.33□□□□□ -0.44
COL4A6-202ENST00000372216 IGF1RP08069 1367 aa12.33□□□□□ -0.44
COL4A6-202ENST00000372216 RASSF8Q8NHQ8 419 aa12.33□□□□□ -0.44
COL4A6-202ENST00000372216 RCAN3Q9UKA8 241 aa12.33□□□□□ -0.44
COL4A6-202ENST00000372216 SMC4Q9NTJ3 1288 aa12.33□□□□□ -0.44
COL4A6-202ENST00000372216 KIAA1211Q6ZU35 1233 aa12.32□□□□□ -0.44
COL4A6-202ENST00000372216 MINK1Q8N4C8 1332 aaPredicted RBP12.32□□□□□ -0.44
COL4A6-202ENST00000372216 LMOD3Q0VAK6 560 aa12.32□□□□□ -0.44
COL4A6-202ENST00000372216 COG3Q96JB2 828 aa12.32□□□□□ -0.44
COL4A6-202ENST00000372216 EVC2Q86UK5 1308 aa12.32□□□□□ -0.44
COL4A6-202ENST00000372216 SLC4A10Q6U841 1118 aa12.31□□□□□ -0.44
COL4A6-202ENST00000372216 CNKSR2Q8WXI2 1034 aa12.31□□□□□ -0.44
COL4A6-202ENST00000372216 CFAP44Q96MT7 982 aa12.31□□□□□ -0.44
COL4A6-202ENST00000372216 NCAPD3P42695 1498 aa12.31□□□□□ -0.44
COL4A6-202ENST00000372216 NGEFQ8N5V2 710 aa12.31□□□□□ -0.44
COL4A6-202ENST00000372216 RWDD1Q9H446 243 aaPredicted RBP12.3□□□□□ -0.44
COL4A6-202ENST00000372216 PANK3Q9H999 370 aa12.3□□□□□ -0.44
COL4A6-202ENST00000372216 ST20-MTHFSA0A0A6YYL1 179 aa12.3□□□□□ -0.44
COL4A6-202ENST00000372216 A0A0U1RQG5 324 aaPredicted RBP12.29□□□□□ -0.44
COL4A6-202ENST00000372216 MARCH6O60337 910 aa12.29□□□□□ -0.44
COL4A6-202ENST00000372216 FOXD4L1Q9NU39 408 aa12.29□□□□□ -0.44
COL4A6-202ENST00000372216 KIF15Q9NS87 1388 aa12.29□□□□□ -0.44
COL4A6-202ENST00000372216 C1orf141Q5JVX7 400 aa12.29□□□□□ -0.44
COL4A6-202ENST00000372216 GPATCH3Q96I76 525 aa12.28□□□□□ -0.44
COL4A6-202ENST00000372216 SYTL4Q96C24 671 aaPredicted RBP12.28□□□□□ -0.44
COL4A6-202ENST00000372216 GRIN2BQ13224 1484 aa12.28□□□□□ -0.44
COL4A6-202ENST00000372216 NRDCO43847 1150 aa12.27□□□□□ -0.44
COL4A6-202ENST00000372216 CUX1P39880 1505 aa12.27□□□□□ -0.44
COL4A6-202ENST00000372216 MRC2Q9UBG0 1479 aa12.27□□□□□ -0.44
COL4A6-202ENST00000372216 TRIM6-TRIM34B2RNG4 842 aa12.27□□□□□ -0.44
COL4A6-202ENST00000372216 L1TD1Q5T7N2 865 aaKnown RBP12.27□□□□□ -0.45
COL4A6-202ENST00000372216 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.27□□□□□ -0.45
COL4A6-202ENST00000372216 RRP7AQ9Y3A4 280 aaKnown RBP12.27□□□□□ -0.45
COL4A6-202ENST00000372216 MYOM3Q5VTT5 1437 aa12.27□□□□□ -0.45
COL4A6-202ENST00000372216 CGNL1Q0VF96 1302 aa12.27□□□□□ -0.45
COL4A6-202ENST00000372216 ARHGAP5Q13017 1502 aa12.27□□□□□ -0.45
COL4A6-202ENST00000372216 FOXD4L5Q5VV16 416 aaPredicted RBP12.27□□□□□ -0.45
COL4A6-202ENST00000372216 NLRP13Q86W25 1043 aa12.27□□□□□ -0.45
COL4A6-202ENST00000372216 FOXD4L4Q8WXT5 416 aaPredicted RBP12.27□□□□□ -0.45
COL4A6-202ENST00000372216 CWC22Q9HCG8 908 aaKnown RBP12.27□□□□□ -0.45
COL4A6-202ENST00000372216 CC2D2AQ9P2K1 1620 aa12.27□□□□□ -0.45
COL4A6-202ENST00000372216 PSME1Q06323 249 aa12.26□□□□□ -0.45
COL4A6-202ENST00000372216 HDAC5Q9UQL6 1122 aa12.26□□□□□ -0.45
COL4A6-202ENST00000372216 NOP58Q9Y2X3 529 aaKnown RBP12.26□□□□□ -0.45
COL4A6-202ENST00000372216 PMFBP1Q8TBY8 1022 aa12.25□□□□□ -0.45
COL4A6-202ENST00000372216 GZF1Q9H116 711 aaPredicted RBP12.25□□□□□ -0.45
COL4A6-202ENST00000372216 CENPJQ9HC77 1338 aaPredicted RBP12.25□□□□□ -0.45
COL4A6-202ENST00000372216 NESP48681 1621 aa12.25□□□□□ -0.45
COL4A6-202ENST00000372216 HMMRO75330 724 aa12.25□□□□□ -0.45
COL4A6-202ENST00000372216 ZNF644Q9H582 1327 aaPredicted RBP12.25□□□□□ -0.45
COL4A6-202ENST00000372216 PHLDB1Q86UU1 1377 aa12.25□□□□□ -0.45
COL4A6-202ENST00000372216 MYBBP1AQ9BQG0 1328 aaKnown RBP12.24□□□□□ -0.45
COL4A6-202ENST00000372216 CLUAP1Q96AJ1 413 aa12.24□□□□□ -0.45
COL4A6-202ENST00000372216 PPP1R1BQ9UD71 204 aaPredicted RBP12.24□□□□□ -0.45
COL4A6-202ENST00000372216 PES1O00541 588 aaKnown RBP12.24□□□□□ -0.45
COL4A6-202ENST00000372216 CHAF1AQ13111 956 aaPredicted RBP12.24□□□□□ -0.45
COL4A6-202ENST00000372216 PRG4Q92954 1404 aaPredicted RBP12.23□□□□□ -0.45
COL4A6-202ENST00000372216 USP47Q96K76 1375 aa12.23□□□□□ -0.45
COL4A6-202ENST00000372216 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.22□□□□□ -0.45
COL4A6-202ENST00000372216 CTDP1Q9Y5B0 961 aaPredicted RBP12.22□□□□□ -0.45
COL4A6-202ENST00000372216 DHX57Q6P158 1386 aaKnown RBP12.22□□□□□ -0.45
COL4A6-202ENST00000372216 ATF3P18847 181 aa12.21□□□□□ -0.45
COL4A6-202ENST00000372216 TRIM34Q9BYJ4 488 aa12.21□□□□□ -0.45
COL4A6-202ENST00000372216 IFT140Q96RY7 1462 aa12.21□□□□□ -0.46
COL4A6-202ENST00000372216 MSNP26038 577 aaKnown RBP12.21□□□□□ -0.46
COL4A6-202ENST00000372216 FGD6Q6ZV73 1430 aa12.2□□□□□ -0.46
COL4A6-202ENST00000372216 TTC5Q8N0Z6 440 aa12.2□□□□□ -0.46
COL4A6-202ENST00000372216 TCEAL9Q9UHQ7 104 aa12.2□□□□□ -0.46
COL4A6-202ENST00000372216 SYNJ2O15056 1496 aa12.2□□□□□ -0.46
COL4A6-202ENST00000372216 ELL2O00472 640 aaPredicted RBP12.19□□□□□ -0.46
COL4A6-202ENST00000372216 TEFQ10587 303 aa12.19□□□□□ -0.46
COL4A6-202ENST00000372216 MFAP1P55081 439 aaKnown RBP12.18□□□□□ -0.46
COL4A6-202ENST00000372216 NECTIN2Q92692 538 aa12.18□□□□□ -0.46
COL4A6-202ENST00000372216 KIF21BO75037 1637 aa12.18□□□□□ -0.46
COL4A6-202ENST00000372216 PATL2C9JE40 543 aaKnown RBP12.17□□□□□ -0.46
COL4A6-202ENST00000372216 FYCO1Q9BQS8 1478 aa12.17□□□□□ -0.46
COL4A6-202ENST00000372216 FOXD4L6Q3SYB3 417 aaPredicted RBP12.17□□□□□ -0.46
COL4A6-202ENST00000372216 FOXD4L3Q6VB84 417 aaPredicted RBP12.17□□□□□ -0.46
COL4A6-202ENST00000372216 EIF2S2P20042 333 aaKnown RBP12.17□□□□□ -0.46
COL4A6-202ENST00000372216 CASKIN1Q8WXD9 1431 aa12.17□□□□□ -0.46
COL4A6-202ENST00000372216 NCOA2Q15596 1464 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms