RNA–Protein interactions for RNA: ENST00000371429.3

NDC1-201, Transcript of NDC1 transmembrane nucleoporin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDC1, Length 5,134 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-201ENST00000371429 CFTRP13569 1480 aa18.64■□□□□ 0.58
NDC1-201ENST00000371429 SLC4A10Q6U841 1118 aa18.64■□□□□ 0.57
NDC1-201ENST00000371429 KIAA1211Q6ZU35 1233 aa18.64■□□□□ 0.57
NDC1-201ENST00000371429 PSME1Q06323 249 aa18.63■□□□□ 0.57
NDC1-201ENST00000371429 RWDD1Q9H446 243 aaPredicted RBP18.63■□□□□ 0.57
NDC1-201ENST00000371429 TRIM44Q96DX7 344 aaPredicted RBP18.63■□□□□ 0.57
NDC1-201ENST00000371429 C1orf141Q5JVX7 400 aa18.61■□□□□ 0.57
NDC1-201ENST00000371429 DHX57Q6P158 1386 aaKnown RBP18.6■□□□□ 0.57
NDC1-201ENST00000371429 PTMAP06454 111 aaKnown RBP18.6■□□□□ 0.57
NDC1-201ENST00000371429 IFT140Q96RY7 1462 aa18.6■□□□□ 0.57
NDC1-201ENST00000371429 CLUAP1Q96AJ1 413 aa18.59■□□□□ 0.57
NDC1-201ENST00000371429 PHLDB1Q86UU1 1377 aa18.59■□□□□ 0.57
NDC1-201ENST00000371429 HMMRO75330 724 aa18.59■□□□□ 0.57
NDC1-201ENST00000371429 HSCBQ8IWL3 235 aa18.59■□□□□ 0.57
NDC1-201ENST00000371429 FGD6Q6ZV73 1430 aa18.59■□□□□ 0.57
NDC1-201ENST00000371429 CC2D2AQ9P2K1 1620 aa18.59■□□□□ 0.57
NDC1-201ENST00000371429 PRDM2Q13029 1718 aa18.59■□□□□ 0.57
NDC1-201ENST00000371429 GOLGA6L4A6NEF3 574 aa18.59■□□□□ 0.57
NDC1-201ENST00000371429 RRP7AQ9Y3A4 280 aaKnown RBP18.58■□□□□ 0.57
NDC1-201ENST00000371429 SYNJ2O15056 1496 aa18.58■□□□□ 0.57
NDC1-201ENST00000371429 ATF3P18847 181 aa18.58■□□□□ 0.57
NDC1-201ENST00000371429 TEFQ10587 303 aa18.58■□□□□ 0.56
NDC1-201ENST00000371429 USP47Q96K76 1375 aa18.57■□□□□ 0.56
NDC1-201ENST00000371429 G3V3G9 751 aa18.57■□□□□ 0.56
NDC1-201ENST00000371429 DCAF8Q5TAQ9 597 aa18.57■□□□□ 0.56
NDC1-201ENST00000371429 CENPJQ9HC77 1338 aaPredicted RBP18.56■□□□□ 0.56
NDC1-201ENST00000371429 MYBBP1AQ9BQG0 1328 aaKnown RBP18.56■□□□□ 0.56
NDC1-201ENST00000371429 STAC3Q96MF2 364 aa18.56■□□□□ 0.56
NDC1-201ENST00000371429 ANKRD50Q9ULJ7 1429 aa18.56■□□□□ 0.56
NDC1-201ENST00000371429 PDE3BQ13370 1112 aa18.54■□□□□ 0.56
NDC1-201ENST00000371429 ELL2O00472 640 aaPredicted RBP18.54■□□□□ 0.56
NDC1-201ENST00000371429 PLCB2Q00722 1185 aa18.54■□□□□ 0.56
NDC1-201ENST00000371429 CUX1P39880 1505 aa18.53■□□□□ 0.56
NDC1-201ENST00000371429 ARHGAP5Q13017 1502 aa18.53■□□□□ 0.56
NDC1-201ENST00000371429 MEX3CQ5U5Q3 659 aaKnown RBP18.53■□□□□ 0.56
NDC1-201ENST00000371429 GPATCH3Q96I76 525 aa18.53■□□□□ 0.56
NDC1-201ENST00000371429 CASKIN1Q8WXD9 1431 aa18.52■□□□□ 0.56
NDC1-201ENST00000371429 PMFBP1Q8TBY8 1022 aa18.52■□□□□ 0.56
NDC1-201ENST00000371429 FRAT2O75474 233 aaPredicted RBP18.51■□□□□ 0.55
NDC1-201ENST00000371429 TTC5Q8N0Z6 440 aa18.51■□□□□ 0.55
NDC1-201ENST00000371429 GNL2Q13823 731 aaKnown RBP18.51■□□□□ 0.55
NDC1-201ENST00000371429 TOPBP1Q92547 1522 aa18.5■□□□□ 0.55
NDC1-201ENST00000371429 MSH5O43196 834 aa18.5■□□□□ 0.55
NDC1-201ENST00000371429 TXNDC2Q86VQ3 553 aa18.49■□□□□ 0.55
NDC1-201ENST00000371429 DIAPH1O60610 1272 aaKnown RBP18.49■□□□□ 0.55
NDC1-201ENST00000371429 NCOA2Q15596 1464 aa18.49■□□□□ 0.55
NDC1-201ENST00000371429 TRIM6-TRIM34B2RNG4 842 aa18.48■□□□□ 0.55
NDC1-201ENST00000371429 SYTL4Q96C24 671 aaPredicted RBP18.48■□□□□ 0.55
NDC1-201ENST00000371429 LRRC9Q6ZRR7 1453 aa18.48■□□□□ 0.55
NDC1-201ENST00000371429 FYCO1Q9BQS8 1478 aa18.48■□□□□ 0.55
NDC1-201ENST00000371429 TMEM132EQ6IEE7 984 aa18.48■□□□□ 0.55
NDC1-201ENST00000371429 SPRYD3Q8NCJ5 442 aa18.46■□□□□ 0.55
NDC1-201ENST00000371429 POLA1P09884 1462 aaPredicted RBP18.46■□□□□ 0.54
NDC1-201ENST00000371429 ERICH6BQ5W0A0 696 aa18.45■□□□□ 0.54
NDC1-201ENST00000371429 HMGXB3Q12766 1538 aa18.45■□□□□ 0.54
NDC1-201ENST00000371429 SNAPC4Q5SXM2 1469 aa18.45■□□□□ 0.54
NDC1-201ENST00000371429 KIF21BO75037 1637 aa18.45■□□□□ 0.54
NDC1-201ENST00000371429 PRKRIP1Q9H875 184 aaPredicted RBP18.44■□□□□ 0.54
NDC1-201ENST00000371429 NGEFQ8N5V2 710 aa18.44■□□□□ 0.54
NDC1-201ENST00000371429 EIF2S2P20042 333 aaKnown RBP18.43■□□□□ 0.54
NDC1-201ENST00000371429 PROSER2Q86WR7 435 aaPredicted RBP18.43■□□□□ 0.54
NDC1-201ENST00000371429 RAPGEF4Q8WZA2 1011 aa18.43■□□□□ 0.54
NDC1-201ENST00000371429 BCL2L13Q9BXK5 485 aa18.42■□□□□ 0.54
NDC1-201ENST00000371429 NOP58Q9Y2X3 529 aaKnown RBP18.42■□□□□ 0.54
NDC1-201ENST00000371429 NEXNQ0ZGT2 675 aa18.42■□□□□ 0.54
NDC1-201ENST00000371429 THEMISQ8N1K5 641 aaPredicted RBP18.42■□□□□ 0.54
NDC1-201ENST00000371429 RAPGEF3O95398 923 aa18.42■□□□□ 0.54
NDC1-201ENST00000371429 SCAPERQ9BY12 1400 aa18.42■□□□□ 0.54
NDC1-201ENST00000371429 APAF1O14727 1248 aa18.41■□□□□ 0.54
NDC1-201ENST00000371429 NLRP6P59044 892 aa18.41■□□□□ 0.54
NDC1-201ENST00000371429 GOLGA6L6A8MZA4 724 aa18.41■□□□□ 0.54
NDC1-201ENST00000371429 DNTTIP2Q5QJE6 756 aaKnown RBP18.41■□□□□ 0.54
NDC1-201ENST00000371429 NUTM2GQ5VZR2 741 aa18.41■□□□□ 0.54
NDC1-201ENST00000371429 CABP2Q9NPB3 220 aa18.41■□□□□ 0.54
NDC1-201ENST00000371429 NLRP2Q9NX02 1062 aa18.41■□□□□ 0.54
NDC1-201ENST00000371429 CLSTN1O94985 981 aa18.4■□□□□ 0.54
NDC1-201ENST00000371429 E9PSI1 815 aa18.4■□□□□ 0.54
NDC1-201ENST00000371429 DNAJC5BQ9UF47 199 aa18.4■□□□□ 0.54
NDC1-201ENST00000371429 CFAP70Q5T0N1 1121 aa18.39■□□□□ 0.54
NDC1-201ENST00000371429 NRDCO43847 1150 aa18.39■□□□□ 0.53
NDC1-201ENST00000371429 GGNBP2Q9H3C7 697 aa18.39■□□□□ 0.53
NDC1-201ENST00000371429 MIA2Q96PC5 1412 aa18.38■□□□□ 0.53
NDC1-201ENST00000371429 RIPK4P57078 832 aa18.38■□□□□ 0.53
NDC1-201ENST00000371429 TOMM22Q9NS69 142 aa18.38■□□□□ 0.53
NDC1-201ENST00000371429 SYNJ1O43426 1573 aa18.38■□□□□ 0.53
NDC1-201ENST00000371429 ERICH3Q5RHP9 1530 aa18.37■□□□□ 0.53
NDC1-201ENST00000371429 TCERG1O14776 1098 aaKnown RBP18.37■□□□□ 0.53
NDC1-201ENST00000371429 ESCO1Q5FWF5 840 aa18.37■□□□□ 0.53
NDC1-201ENST00000371429 ZKSCAN2Q63HK3 967 aa18.36■□□□□ 0.53
NDC1-201ENST00000371429 GPRASP1Q5JY77 1395 aa18.36■□□□□ 0.53
NDC1-201ENST00000371429 MFAP1P55081 439 aaKnown RBP18.36■□□□□ 0.53
NDC1-201ENST00000371429 C9orf78Q9NZ63 289 aaPredicted RBP18.36■□□□□ 0.53
NDC1-201ENST00000371429 PLEKHH2Q8IVE3 1493 aa18.35■□□□□ 0.53
NDC1-201ENST00000371429 ARAP1Q96P48 1450 aa18.35■□□□□ 0.53
NDC1-201ENST00000371429 NECTIN2Q92692 538 aa18.35■□□□□ 0.53
NDC1-201ENST00000371429 TROQ12816 1431 aaPredicted RBP18.34■□□□□ 0.53
NDC1-201ENST00000371429 SLC52A1Q9NWF4 448 aa18.34■□□□□ 0.53
NDC1-201ENST00000371429 RRBP1Q9P2E9 1410 aaKnown RBP18.34■□□□□ 0.53
NDC1-201ENST00000371429 HSP90B1P14625 803 aaKnown RBP18.34■□□□□ 0.53
NDC1-201ENST00000371429 DDX58O95786 925 aaKnown RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms