RNA–Protein interactions for RNA: ENST00000370828.3

GPC4-201, Transcript of glypican 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC4, Length 4,960 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4-201ENST00000370828 TRAK2O60296 914 aa15.78■□□□□ 0.12
GPC4-201ENST00000370828 AKNAQ7Z591 1439 aa15.78■□□□□ 0.12
GPC4-201ENST00000370828 RUSC2Q8N2Y8 1516 aa15.78■□□□□ 0.12
GPC4-201ENST00000370828 CARMIL1Q5VZK9 1371 aa15.78■□□□□ 0.12
GPC4-201ENST00000370828 ST20-MTHFSA0A0A6YYL1 179 aa15.78■□□□□ 0.12
GPC4-201ENST00000370828 CSPP1Q1MSJ5 1256 aa15.77■□□□□ 0.11
GPC4-201ENST00000370828 WASHC2AQ641Q2 1341 aa15.76■□□□□ 0.11
GPC4-201ENST00000370828 PHF14O94880 888 aa15.75■□□□□ 0.11
GPC4-201ENST00000370828 HMGB1P09429 215 aaKnown RBP15.75■□□□□ 0.11
GPC4-201ENST00000370828 NASPP49321 788 aaPredicted RBP15.75■□□□□ 0.11
GPC4-201ENST00000370828 RAPGEF2Q9Y4G8 1499 aa15.75■□□□□ 0.11
GPC4-201ENST00000370828 RRP7AQ9Y3A4 280 aaKnown RBP15.75■□□□□ 0.11
GPC4-201ENST00000370828 GOLGA6L1Q8N7Z2 621 aa15.75■□□□□ 0.11
GPC4-201ENST00000370828 MROH2BQ7Z745 1585 aa15.74■□□□□ 0.11
GPC4-201ENST00000370828 CGNL1Q0VF96 1302 aa15.74■□□□□ 0.11
GPC4-201ENST00000370828 ST18O60284 1047 aa15.74■□□□□ 0.11
GPC4-201ENST00000370828 CCDC184Q52MB2 194 aa15.73■□□□□ 0.11
GPC4-201ENST00000370828 PHLDB1Q86UU1 1377 aa15.72■□□□□ 0.11
GPC4-201ENST00000370828 CCDC7Q96M83 1385 aa15.72■□□□□ 0.11
GPC4-201ENST00000370828 SETQ01105 290 aaPredicted RBP15.72■□□□□ 0.11
GPC4-201ENST00000370828 CDCA7LQ96GN5 454 aa15.72■□□□□ 0.11
GPC4-201ENST00000370828 KIF7Q2M1P5 1343 aa15.71■□□□□ 0.11
GPC4-201ENST00000370828 KIAA1211Q6ZU35 1233 aa15.71■□□□□ 0.11
GPC4-201ENST00000370828 PANK3Q9H999 370 aa15.71■□□□□ 0.11
GPC4-201ENST00000370828 CNTLNQ9NXG0 1405 aa15.71■□□□□ 0.1
GPC4-201ENST00000370828 ZNF592Q92610 1267 aa15.7■□□□□ 0.1
GPC4-201ENST00000370828 C22orf23Q9BZE7 217 aa15.7■□□□□ 0.1
GPC4-201ENST00000370828 BBXQ8WY36 941 aaPredicted RBP15.7■□□□□ 0.1
GPC4-201ENST00000370828 POGKQ9P215 609 aa15.7■□□□□ 0.1
GPC4-201ENST00000370828 TAF3Q5VWG9 929 aa15.69■□□□□ 0.1
GPC4-201ENST00000370828 ESPNB1AK53 854 aa15.69■□□□□ 0.1
GPC4-201ENST00000370828 ANKRD45Q5TZF3 282 aa15.69■□□□□ 0.1
GPC4-201ENST00000370828 APAF1O14727 1248 aa15.69■□□□□ 0.1
GPC4-201ENST00000370828 ESF1Q9H501 851 aaKnown RBP15.69■□□□□ 0.1
GPC4-201ENST00000370828 CUX2O14529 1486 aa15.69■□□□□ 0.1
GPC4-201ENST00000370828 BAZ1AQ9NRL2 1556 aaPredicted RBP15.69■□□□□ 0.1
GPC4-201ENST00000370828 MCTP1Q6DN14 999 aa15.68■□□□□ 0.1
GPC4-201ENST00000370828 CHMP7Q8WUX9 453 aaPredicted RBP15.68■□□□□ 0.1
GPC4-201ENST00000370828 USP47Q96K76 1375 aa15.67■□□□□ 0.1
GPC4-201ENST00000370828 CCDC66A2RUB6 948 aa15.67■□□□□ 0.1
GPC4-201ENST00000370828 TULP1O00294 542 aaPredicted RBP15.67■□□□□ 0.1
GPC4-201ENST00000370828 E9PSI1 815 aa15.67■□□□□ 0.1
GPC4-201ENST00000370828 NCBP3Q53F19 620 aaKnown RBP15.67■□□□□ 0.1
GPC4-201ENST00000370828 RNF214Q8ND24 703 aa15.67■□□□□ 0.1
GPC4-201ENST00000370828 NUP155O75694 1391 aa15.67■□□□□ 0.1
GPC4-201ENST00000370828 TRIM6-TRIM34B2RNG4 842 aa15.67■□□□□ 0.1
GPC4-201ENST00000370828 BCL11BQ9C0K0 894 aaPredicted RBP15.67■□□□□ 0.1
GPC4-201ENST00000370828 PLPPR3Q6T4P5 718 aa15.66■□□□□ 0.1
GPC4-201ENST00000370828 SAFB2Q14151 953 aaKnown RBP eCLIP15.66■□□□□ 0.1
GPC4-201ENST00000370828 GRPEL1Q9HAV7 217 aa15.65■□□□□ 0.1
GPC4-201ENST00000370828 SKAP1Q86WV1 359 aa15.64■□□□□ 0.09
GPC4-201ENST00000370828 ZKSCAN2Q63HK3 967 aa15.63■□□□□ 0.09
GPC4-201ENST00000370828 PANK1Q8TE04 598 aa15.63■□□□□ 0.09
GPC4-201ENST00000370828 NPM1P06748 294 aaKnown RBP eCLIP15.63■□□□□ 0.09
GPC4-201ENST00000370828 CCDC18Q5T9S5 1454 aa15.62■□□□□ 0.09
GPC4-201ENST00000370828 CAVIN1Q6NZI2 390 aaKnown RBP15.62■□□□□ 0.09
GPC4-201ENST00000370828 KIF16BQ96L93 1317 aa15.62■□□□□ 0.09
GPC4-201ENST00000370828 PAXIP1Q6ZW49 1069 aaPredicted RBP15.62■□□□□ 0.09
GPC4-201ENST00000370828 CCDC173Q0VFZ6 552 aa15.62■□□□□ 0.09
GPC4-201ENST00000370828 SRPK2P78362 688 aaKnown RBP15.61■□□□□ 0.09
GPC4-201ENST00000370828 HTATSF1O43719 755 aaKnown RBP15.61■□□□□ 0.09
GPC4-201ENST00000370828 CCDC39Q9UFE4 941 aa15.61■□□□□ 0.09
GPC4-201ENST00000370828 BRD2P25440 801 aaKnown RBP15.61■□□□□ 0.09
GPC4-201ENST00000370828 ERCC6Q03468 1493 aa15.6■□□□□ 0.09
GPC4-201ENST00000370828 UQCRHLA0A096LP55 91 aa15.59■□□□□ 0.09
GPC4-201ENST00000370828 UQCRHP07919 91 aa15.59■□□□□ 0.09
GPC4-201ENST00000370828 MCM4P33991 863 aa15.59■□□□□ 0.09
GPC4-201ENST00000370828 CCAR2Q8N163 923 aaKnown RBP15.59■□□□□ 0.09
GPC4-201ENST00000370828 NUCB2P80303 420 aa15.58■□□□□ 0.09
GPC4-201ENST00000370828 LNPKQ9C0E8 428 aa15.58■□□□□ 0.08
GPC4-201ENST00000370828 CHMP3Q9Y3E7 222 aa15.58■□□□□ 0.08
GPC4-201ENST00000370828 MPNDQ8N594 471 aa15.58■□□□□ 0.08
GPC4-201ENST00000370828 PRDM10Q9NQV6 1147 aa15.58■□□□□ 0.08
GPC4-201ENST00000370828 FHOD3Q2V2M9 1422 aa15.57■□□□□ 0.08
GPC4-201ENST00000370828 HSP90B1P14625 803 aaKnown RBP15.57■□□□□ 0.08
GPC4-201ENST00000370828 TPM4P67936 248 aa15.57■□□□□ 0.08
GPC4-201ENST00000370828 SMG6Q86US8 1419 aaKnown RBP15.57■□□□□ 0.08
GPC4-201ENST00000370828 NOM1Q5C9Z4 860 aaKnown RBP15.57■□□□□ 0.08
GPC4-201ENST00000370828 ELL2O00472 640 aaPredicted RBP15.57■□□□□ 0.08
GPC4-201ENST00000370828 DIAPH3Q9NSV4 1193 aa15.57■□□□□ 0.08
GPC4-201ENST00000370828 SOX12O15370 315 aa15.56■□□□□ 0.08
GPC4-201ENST00000370828 GOLGA6L19H0YKK7 550 aa15.56■□□□□ 0.08
GPC4-201ENST00000370828 GNL2Q13823 731 aaKnown RBP15.56■□□□□ 0.08
GPC4-201ENST00000370828 IFT57Q9NWB7 429 aa15.56■□□□□ 0.08
GPC4-201ENST00000370828 MAPK8IP2Q13387 824 aaPredicted RBP15.56■□□□□ 0.08
GPC4-201ENST00000370828 DZIP1LQ8IYY4 767 aaKnown RBP15.55■□□□□ 0.08
GPC4-201ENST00000370828 SLC4A10Q6U841 1118 aa15.55■□□□□ 0.08
GPC4-201ENST00000370828 BECN2A8MW95 431 aa15.55■□□□□ 0.08
GPC4-201ENST00000370828 HMMRO75330 724 aa15.55■□□□□ 0.08
GPC4-201ENST00000370828 TEX35Q5T0J7 233 aa15.54■□□□□ 0.08
GPC4-201ENST00000370828 RILPL2Q969X0 211 aa15.54■□□□□ 0.08
GPC4-201ENST00000370828 CCDC9Q9Y3X0 531 aaKnown RBP15.53■□□□□ 0.08
GPC4-201ENST00000370828 DDX19BQ9UMR2 479 aa15.53■□□□□ 0.08
GPC4-201ENST00000370828 ADAMTS8Q9UP79 889 aa15.53■□□□□ 0.08
GPC4-201ENST00000370828 PDZRN3Q9UPQ7 1066 aa15.53■□□□□ 0.08
GPC4-201ENST00000370828 ATP6V1DQ9Y5K8 247 aa15.53■□□□□ 0.08
GPC4-201ENST00000370828 IRX3P78415 501 aaPredicted RBP15.52■□□□□ 0.08
GPC4-201ENST00000370828 PNISRQ8TF01 805 aaKnown RBP15.52■□□□□ 0.08
GPC4-201ENST00000370828 WIZO95785 1651 aa15.52■□□□□ 0.08
GPC4-201ENST00000370828 PRPF40AO75400 957 aaKnown RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms