RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 ARHGAP35Q9NRY4 1499 aa11.42□□□□□ -0.58
VPS13A-203ENST00000360280 TIMELESSQ9UNS1 1208 aa11.42□□□□□ -0.58
VPS13A-203ENST00000360280 MYO6Q9UM54 1294 aa11.42□□□□□ -0.58
VPS13A-203ENST00000360280 TAF7LQ5H9L4 462 aa11.41□□□□□ -0.58
VPS13A-203ENST00000360280 CHMP3Q9Y3E7 222 aa11.41□□□□□ -0.58
VPS13A-203ENST00000360280 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS13A-203ENST00000360280 RALBP1Q15311 655 aa11.41□□□□□ -0.58
VPS13A-203ENST00000360280 SMC4Q9NTJ3 1288 aa11.41□□□□□ -0.58
VPS13A-203ENST00000360280 LRRFIP1Q32MZ4 808 aaKnown RBP11.41□□□□□ -0.58
VPS13A-203ENST00000360280 KRI1Q8N9T8 703 aaKnown RBP11.41□□□□□ -0.58
VPS13A-203ENST00000360280 FAM13BQ9NYF5 915 aa11.41□□□□□ -0.58
VPS13A-203ENST00000360280 FAM184AQ8NB25 1140 aa11.4□□□□□ -0.58
VPS13A-203ENST00000360280 CCDC173Q0VFZ6 552 aa11.4□□□□□ -0.58
VPS13A-203ENST00000360280 HDGFL2Q7Z4V5 671 aaPredicted RBP11.4□□□□□ -0.58
VPS13A-203ENST00000360280 KCNH8Q96L42 1107 aa11.4□□□□□ -0.58
VPS13A-203ENST00000360280 NOL8Q76FK4 1167 aaKnown RBP11.39□□□□□ -0.59
VPS13A-203ENST00000360280 CCDC47Q96A33 483 aaKnown RBP11.39□□□□□ -0.59
VPS13A-203ENST00000360280 PCMTD1Q96MG8 357 aaPredicted RBP11.39□□□□□ -0.59
VPS13A-203ENST00000360280 DCAF11Q8TEB1 546 aa11.39□□□□□ -0.59
VPS13A-203ENST00000360280 CCNB3Q8WWL7 1395 aa11.39□□□□□ -0.59
VPS13A-203ENST00000360280 AKAP17AQ02040 695 aaKnown RBP11.39□□□□□ -0.59
VPS13A-203ENST00000360280 ROCK2O75116 1388 aaKnown RBP11.39□□□□□ -0.59
VPS13A-203ENST00000360280 KIF27Q86VH2 1401 aa11.38□□□□□ -0.59
VPS13A-203ENST00000360280 FBXO3Q9UK99 471 aa11.38□□□□□ -0.59
VPS13A-203ENST00000360280 DIAPH3Q9NSV4 1193 aa11.38□□□□□ -0.59
VPS13A-203ENST00000360280 ERCC4Q92889 916 aaPredicted RBP11.37□□□□□ -0.59
VPS13A-203ENST00000360280 ZRSR2Q15696 482 aaKnown RBP11.37□□□□□ -0.59
VPS13A-203ENST00000360280 ODF2Q5BJF6 829 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 CENPJQ9HC77 1338 aaPredicted RBP11.36□□□□□ -0.59
VPS13A-203ENST00000360280 G3V3G9 751 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 DCAF8Q5TAQ9 597 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 NEXNQ0ZGT2 675 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 FAM43AQ8N2R8 423 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 FOXD4L1Q9NU39 408 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 TRIM29Q14134 588 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 CENPQQ7L2Z9 268 aaPredicted RBP11.36□□□□□ -0.59
VPS13A-203ENST00000360280 NAT10Q9H0A0 1025 aaKnown RBP11.36□□□□□ -0.59
VPS13A-203ENST00000360280 MNS1Q8NEH6 495 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 LMOD3Q0VAK6 560 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 FAM161AQ3B820 660 aa11.36□□□□□ -0.59
VPS13A-203ENST00000360280 CPLX2Q6PUV4 134 aaKnown RBP11.35□□□□□ -0.59
VPS13A-203ENST00000360280 CT47A1Q5JQC4 288 aaPredicted RBP11.35□□□□□ -0.59
VPS13A-203ENST00000360280 TOMM22Q9NS69 142 aa11.35□□□□□ -0.59
VPS13A-203ENST00000360280 REC8O95072 547 aa11.35□□□□□ -0.59
VPS13A-203ENST00000360280 AMOTL1Q8IY63 956 aa11.35□□□□□ -0.59
VPS13A-203ENST00000360280 SOX12O15370 315 aa11.34□□□□□ -0.59
VPS13A-203ENST00000360280 U2AF1L5P0DN76 240 aaPredicted RBP11.34□□□□□ -0.59
VPS13A-203ENST00000360280 U2AF1Q01081 240 aaKnown RBP eCLIP11.34□□□□□ -0.593e-6■□□□□ 8.7
VPS13A-203ENST00000360280 LEKR1Q6ZMV7 388 aa11.34□□□□□ -0.59
VPS13A-203ENST00000360280 GOLGA6L7A0A1B0GV03 622 aa11.34□□□□□ -0.59
VPS13A-203ENST00000360280 SYNE3Q6ZMZ3 975 aa11.34□□□□□ -0.59
VPS13A-203ENST00000360280 ZNF330Q9Y3S2 320 aaPredicted RBP11.34□□□□□ -0.59
VPS13A-203ENST00000360280 MYO15BQ96JP2 1530 aa11.34□□□□□ -0.59
VPS13A-203ENST00000360280 CGNL1Q0VF96 1302 aa11.34□□□□□ -0.59
VPS13A-203ENST00000360280 RB1CC1Q8TDY2 1594 aa11.34□□□□□ -0.59
VPS13A-203ENST00000360280 IFT57Q9NWB7 429 aa11.33□□□□□ -0.59
VPS13A-203ENST00000360280 SETD5Q9C0A6 1442 aa11.33□□□□□ -0.6
VPS13A-203ENST00000360280 EIF4G1Q04637 1599 aaKnown RBP11.33□□□□□ -0.6
VPS13A-203ENST00000360280 PDE3BQ13370 1112 aa11.33□□□□□ -0.6
VPS13A-203ENST00000360280 FOXD4L5Q5VV16 416 aaPredicted RBP11.33□□□□□ -0.6
VPS13A-203ENST00000360280 FOXD4L4Q8WXT5 416 aaPredicted RBP11.33□□□□□ -0.6
VPS13A-203ENST00000360280 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.32□□□□□ -0.66e-7■■■■■ 116.7
VPS13A-203ENST00000360280 MCTP1Q6DN14 999 aa11.32□□□□□ -0.6
VPS13A-203ENST00000360280 SASS6Q6UVJ0 657 aa11.32□□□□□ -0.6
VPS13A-203ENST00000360280 ANO8Q9HCE9 1232 aaPredicted RBP11.32□□□□□ -0.6
VPS13A-203ENST00000360280 CAGE1Q8TC20 777 aa11.32□□□□□ -0.6
VPS13A-203ENST00000360280 INCENPQ9NQS7 918 aa11.32□□□□□ -0.6
VPS13A-203ENST00000360280 TNIKQ9UKE5 1360 aa11.32□□□□□ -0.6
VPS13A-203ENST00000360280 TSHZ2Q9NRE2 1034 aa11.32□□□□□ -0.6
VPS13A-203ENST00000360280 ROCK1Q13464 1354 aa11.32□□□□□ -0.6
VPS13A-203ENST00000360280 FRAT2O75474 233 aaPredicted RBP11.31□□□□□ -0.6
VPS13A-203ENST00000360280 RUFY2Q8WXA3 655 aa11.31□□□□□ -0.6
VPS13A-203ENST00000360280 CCDC39Q9UFE4 941 aa11.31□□□□□ -0.6
VPS13A-203ENST00000360280 CCP110O43303 1012 aa11.3□□□□□ -0.6
VPS13A-203ENST00000360280 NAP1L1P55209 391 aaKnown RBP11.3□□□□□ -0.6
VPS13A-203ENST00000360280 ZKSCAN1P17029 563 aaPredicted RBP11.3□□□□□ -0.6
VPS13A-203ENST00000360280 SLC4A10Q6U841 1118 aa11.3□□□□□ -0.6
VPS13A-203ENST00000360280 BICD2Q8TD16 824 aa11.3□□□□□ -0.6
VPS13A-203ENST00000360280 WRNQ14191 1432 aaPredicted RBP eCLIP11.3□□□□□ -0.6
VPS13A-203ENST00000360280 SIN3AQ96ST3 1273 aa11.29□□□□□ -0.6
VPS13A-203ENST00000360280 USP8P40818 1118 aa11.29□□□□□ -0.6
VPS13A-203ENST00000360280 CNKSR2Q8WXI2 1034 aa11.29□□□□□ -0.6
VPS13A-203ENST00000360280 HSP90AB2PQ58FF8 381 aa11.29□□□□□ -0.6
VPS13A-203ENST00000360280 EPS15P42566 896 aa11.29□□□□□ -0.6
VPS13A-203ENST00000360280 CCDC43Q96MW1 224 aaKnown RBP11.29□□□□□ -0.6
VPS13A-203ENST00000360280 WWC1Q8IX03 1113 aa11.29□□□□□ -0.6
VPS13A-203ENST00000360280 STK11IPQ8N1F8 1099 aa11.29□□□□□ -0.6
VPS13A-203ENST00000360280 BAZ1AQ9NRL2 1556 aaPredicted RBP11.29□□□□□ -0.6
VPS13A-203ENST00000360280 KIAA0754O94854 1291 aa11.28□□□□□ -0.6
VPS13A-203ENST00000360280 GOLGA6L10A6NI86 522 aa11.28□□□□□ -0.6
VPS13A-203ENST00000360280 RILPL2Q969X0 211 aa11.28□□□□□ -0.6
VPS13A-203ENST00000360280 PKNOX2Q96KN3 472 aa11.28□□□□□ -0.6
VPS13A-203ENST00000360280 TERF2IPQ9NYB0 399 aa11.27□□□□□ -0.6
VPS13A-203ENST00000360280 KIF15Q9NS87 1388 aa11.27□□□□□ -0.6
VPS13A-203ENST00000360280 DYDC1Q8WWB3 177 aa11.27□□□□□ -0.61
VPS13A-203ENST00000360280 TAF3Q5VWG9 929 aa11.27□□□□□ -0.61
VPS13A-203ENST00000360280 HSP90AB3PQ58FF7 597 aa11.27□□□□□ -0.61
VPS13A-203ENST00000360280 RNF20Q5VTR2 975 aa11.27□□□□□ -0.61
VPS13A-203ENST00000360280 TRIM34Q9BYJ4 488 aa11.27□□□□□ -0.61
VPS13A-203ENST00000360280 BAZ1BQ9UIG0 1483 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms