RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 FOXD4L1Q9NU39 408 aa15.89■□□□□ 0.13
SNRNP48-201ENST00000342415 SRPK2P78362 688 aaKnown RBP15.89■□□□□ 0.13
SNRNP48-201ENST00000342415 CENPQQ7L2Z9 268 aaPredicted RBP15.89■□□□□ 0.13
SNRNP48-201ENST00000342415 CARMIL2Q6F5E8 1435 aa15.88■□□□□ 0.13
SNRNP48-201ENST00000342415 HSP90AB1P08238 724 aaKnown RBP15.88■□□□□ 0.13
SNRNP48-201ENST00000342415 CENPJQ9HC77 1338 aaPredicted RBP15.88■□□□□ 0.13
SNRNP48-201ENST00000342415 ITPRIPQ8IWB1 547 aa15.88■□□□□ 0.13
SNRNP48-201ENST00000342415 POGKQ9P215 609 aa15.87■□□□□ 0.13
SNRNP48-201ENST00000342415 POLA1P09884 1462 aaPredicted RBP15.87■□□□□ 0.13
SNRNP48-201ENST00000342415 SOX12O15370 315 aa15.87■□□□□ 0.13
SNRNP48-201ENST00000342415 ANKRD50Q9ULJ7 1429 aa15.87■□□□□ 0.13
SNRNP48-201ENST00000342415 MS4A1P11836 297 aa15.86■□□□□ 0.13
SNRNP48-201ENST00000342415 BACH2Q9BYV9 841 aa15.86■□□□□ 0.13
SNRNP48-201ENST00000342415 USP35Q9P2H5 1018 aa15.86■□□□□ 0.13
SNRNP48-201ENST00000342415 C20orf194Q5TEA3 1177 aa15.85■□□□□ 0.13
SNRNP48-201ENST00000342415 PANK1Q8TE04 598 aa15.85■□□□□ 0.13
SNRNP48-201ENST00000342415 HSCBQ8IWL3 235 aa15.84■□□□□ 0.13
SNRNP48-201ENST00000342415 FRAT2O75474 233 aaPredicted RBP15.83■□□□□ 0.13
SNRNP48-201ENST00000342415 GLIPR1L2Q4G1C9 344 aa15.83■□□□□ 0.12
SNRNP48-201ENST00000342415 SMC4Q9NTJ3 1288 aa15.83■□□□□ 0.12
SNRNP48-201ENST00000342415 PRG4Q92954 1404 aaPredicted RBP15.83■□□□□ 0.12
SNRNP48-201ENST00000342415 ZBTB7CA1YPR0 619 aa15.83■□□□□ 0.12
SNRNP48-201ENST00000342415 CDK13Q14004 1512 aaKnown RBP15.83■□□□□ 0.12
SNRNP48-201ENST00000342415 SMG6Q86US8 1419 aaKnown RBP15.83■□□□□ 0.12
SNRNP48-201ENST00000342415 EFCAB2Q5VUJ9 269 aa15.83■□□□□ 0.12
SNRNP48-201ENST00000342415 BCAR3O75815 825 aa15.82■□□□□ 0.12
SNRNP48-201ENST00000342415 MLECQ14165 292 aa15.82■□□□□ 0.12
SNRNP48-201ENST00000342415 BRD4O60885 1362 aaPredicted RBP15.82■□□□□ 0.12
SNRNP48-201ENST00000342415 ELL2O00472 640 aaPredicted RBP15.82■□□□□ 0.12
SNRNP48-201ENST00000342415 RWDD1Q9H446 243 aaPredicted RBP15.82■□□□□ 0.12
SNRNP48-201ENST00000342415 GOLGA6L22H0YM25 854 aa15.81■□□□□ 0.12
SNRNP48-201ENST00000342415 ANKRD30BQ9BXX2 1392 aa15.81■□□□□ 0.12
SNRNP48-201ENST00000342415 TOPBP1Q92547 1522 aa15.8■□□□□ 0.12
SNRNP48-201ENST00000342415 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.8■□□□□ 0.12
SNRNP48-201ENST00000342415 PRDM2Q13029 1718 aa15.78■□□□□ 0.12
SNRNP48-201ENST00000342415 SPAG9O60271 1321 aaKnown RBP15.77■□□□□ 0.12
SNRNP48-201ENST00000342415 NCOA1Q15788 1441 aa15.77■□□□□ 0.11
SNRNP48-201ENST00000342415 C14orf37Q86TY3 774 aa15.76■□□□□ 0.11
SNRNP48-201ENST00000342415 E9PSI1 815 aa15.76■□□□□ 0.11
SNRNP48-201ENST00000342415 L1TD1Q5T7N2 865 aaKnown RBP15.76■□□□□ 0.11
SNRNP48-201ENST00000342415 PMFBP1Q8TBY8 1022 aa15.76■□□□□ 0.11
SNRNP48-201ENST00000342415 PPP2R1AP30153 589 aa15.76■□□□□ 0.11
SNRNP48-201ENST00000342415 DAPK1P53355 1430 aa15.75■□□□□ 0.11
SNRNP48-201ENST00000342415 ARID3AQ99856 593 aa15.75■□□□□ 0.11
SNRNP48-201ENST00000342415 KIAA1107Q9UPP5 1409 aa15.75■□□□□ 0.11
SNRNP48-201ENST00000342415 KANK1Q14678 1352 aa15.74■□□□□ 0.11
SNRNP48-201ENST00000342415 UNC13AQ9UPW8 1703 aa15.74■□□□□ 0.11
SNRNP48-201ENST00000342415 EFCAB5A4FU69 1503 aa15.74■□□□□ 0.11
SNRNP48-201ENST00000342415 GOLGA6L3A6NEY3 463 aa15.74■□□□□ 0.11
SNRNP48-201ENST00000342415 PLCB2Q00722 1185 aa15.74■□□□□ 0.11
SNRNP48-201ENST00000342415 PNNQ9H307 717 aaKnown RBP15.73■□□□□ 0.11
SNRNP48-201ENST00000342415 CFAP70Q5T0N1 1121 aa15.72■□□□□ 0.11
SNRNP48-201ENST00000342415 RSPH4AQ5TD94 716 aa15.72■□□□□ 0.11
SNRNP48-201ENST00000342415 PTMAP06454 111 aaKnown RBP15.72■□□□□ 0.11
SNRNP48-201ENST00000342415 PEG3Q9GZU2 1588 aa15.71■□□□□ 0.11
SNRNP48-201ENST00000342415 MAP3K1Q13233 1512 aa15.71■□□□□ 0.11
SNRNP48-201ENST00000342415 EHBP1L1Q8N3D4 1523 aa15.71■□□□□ 0.11
SNRNP48-201ENST00000342415 TMEM132EQ6IEE7 984 aa15.71■□□□□ 0.11
SNRNP48-201ENST00000342415 AFAP1Q8N556 730 aa15.71■□□□□ 0.11
SNRNP48-201ENST00000342415 PTPN23Q9H3S7 1636 aa15.71■□□□□ 0.1
SNRNP48-201ENST00000342415 PTPRGP23470 1445 aa15.71■□□□□ 0.1
SNRNP48-201ENST00000342415 EPRSP07814 1512 aaKnown RBP15.71■□□□□ 0.1
SNRNP48-201ENST00000342415 HMGXB3Q12766 1538 aa15.71■□□□□ 0.1
SNRNP48-201ENST00000342415 CGNL1Q0VF96 1302 aa15.7■□□□□ 0.1
SNRNP48-201ENST00000342415 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.7■□□□□ 0.1
SNRNP48-201ENST00000342415 MIA2Q96PC5 1412 aa15.7■□□□□ 0.1
SNRNP48-201ENST00000342415 BIVM-ERCC5R4GMW8 1640 aa15.69■□□□□ 0.1
SNRNP48-201ENST00000342415 DNTTIP2Q5QJE6 756 aaKnown RBP15.69■□□□□ 0.1
SNRNP48-201ENST00000342415 ABCC5O15440 1437 aa15.69■□□□□ 0.1
SNRNP48-201ENST00000342415 FOXD4L5Q5VV16 416 aaPredicted RBP15.68■□□□□ 0.1
SNRNP48-201ENST00000342415 FOXD4L4Q8WXT5 416 aaPredicted RBP15.68■□□□□ 0.1
SNRNP48-201ENST00000342415 SUPT6HQ7KZ85 1726 aaKnown RBP15.67■□□□□ 0.1
SNRNP48-201ENST00000342415 IPO8O15397 1037 aaKnown RBP15.66■□□□□ 0.1
SNRNP48-201ENST00000342415 TCP11L2Q8N4U5 519 aa15.66■□□□□ 0.1
SNRNP48-201ENST00000342415 NUTM2FA1L443 756 aa15.66■□□□□ 0.1
SNRNP48-201ENST00000342415 ANKRD45Q5TZF3 282 aa15.66■□□□□ 0.1
SNRNP48-201ENST00000342415 NOL8Q76FK4 1167 aaKnown RBP15.66■□□□□ 0.1
SNRNP48-201ENST00000342415 LNPKQ9C0E8 428 aa15.65■□□□□ 0.1
SNRNP48-201ENST00000342415 ZKSCAN2Q63HK3 967 aa15.65■□□□□ 0.1
SNRNP48-201ENST00000342415 EIF3AQ14152 1382 aaKnown RBP15.65■□□□□ 0.1
SNRNP48-201ENST00000342415 MTHFSP49914 203 aa15.65■□□□□ 0.1
SNRNP48-201ENST00000342415 ABCA10Q8WWZ4 1543 aa15.65■□□□□ 0.1
SNRNP48-201ENST00000342415 RPRD2Q5VT52 1461 aaKnown RBP15.65■□□□□ 0.1
SNRNP48-201ENST00000342415 SLC12A5Q9H2X9 1139 aa15.65■□□□□ 0.1
SNRNP48-201ENST00000342415 CASC1Q6TDU7 716 aa15.64■□□□□ 0.09
SNRNP48-201ENST00000342415 C9orf84Q5VXU9 1444 aa15.64■□□□□ 0.09
SNRNP48-201ENST00000342415 FOXD4L6Q3SYB3 417 aaPredicted RBP15.63■□□□□ 0.09
SNRNP48-201ENST00000342415 FOXD4L3Q6VB84 417 aaPredicted RBP15.63■□□□□ 0.09
SNRNP48-201ENST00000342415 TSR2Q969E8 191 aaKnown RBP15.62■□□□□ 0.09
SNRNP48-201ENST00000342415 GGNBP2Q9H3C7 697 aa15.62■□□□□ 0.09
SNRNP48-201ENST00000342415 DZIP1LQ8IYY4 767 aaKnown RBP15.62■□□□□ 0.09
SNRNP48-201ENST00000342415 GBP4Q96PP9 640 aa15.62■□□□□ 0.09
SNRNP48-201ENST00000342415 WASHC2CQ9Y4E1 1318 aa15.62■□□□□ 0.09
SNRNP48-201ENST00000342415 PDZRN3Q9UPQ7 1066 aa15.61■□□□□ 0.09
SNRNP48-201ENST00000342415 MINK1Q8N4C8 1332 aaPredicted RBP15.61■□□□□ 0.09
SNRNP48-201ENST00000342415 TROQ12816 1431 aaPredicted RBP15.6■□□□□ 0.09
SNRNP48-201ENST00000342415 MSNP26038 577 aaKnown RBP15.6■□□□□ 0.09
SNRNP48-201ENST00000342415 HDGFL2Q7Z4V5 671 aaPredicted RBP15.6■□□□□ 0.09
SNRNP48-201ENST00000342415 TAOK2Q9UL54 1235 aa15.6■□□□□ 0.09
SNRNP48-201ENST00000342415 SLC4A10Q6U841 1118 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms