RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 ANP32CO43423 234 aa18.09■□□□□ 0.49
COL18A1-201ENST00000342220 ARHGEF5Q12774 1597 aa18.08■□□□□ 0.48
COL18A1-201ENST00000342220 KIAA1107Q9UPP5 1409 aa18.07■□□□□ 0.48
COL18A1-201ENST00000342220 STAG3Q9UJ98 1225 aa18.06■□□□□ 0.48
COL18A1-201ENST00000342220 DENND4BO75064 1496 aaPredicted RBP18.06■□□□□ 0.48
COL18A1-201ENST00000342220 ADGRL2O95490 1459 aa18.06■□□□□ 0.48
COL18A1-201ENST00000342220 NBPF1Q3BBV0 1214 aa18.05■□□□□ 0.48
COL18A1-201ENST00000342220 CCDC144AA2RUR9 1427 aa18.05■□□□□ 0.48
COL18A1-201ENST00000342220 ESF1Q9H501 851 aaKnown RBP18.05■□□□□ 0.48
COL18A1-201ENST00000342220 PZPP20742 1482 aa18.05■□□□□ 0.48
COL18A1-201ENST00000342220 MYO5CQ9NQX4 1742 aa18.04■□□□□ 0.48
COL18A1-201ENST00000342220 SHANK2Q9UPX8 1470 aa18.04■□□□□ 0.48
COL18A1-201ENST00000342220 KANK1Q14678 1352 aa18.03■□□□□ 0.48
COL18A1-201ENST00000342220 ARAP3Q8WWN8 1544 aa18.03■□□□□ 0.48
COL18A1-201ENST00000342220 C11orf95C9JLR9 678 aaPredicted RBP18.02■□□□□ 0.48
COL18A1-201ENST00000342220 ST20-MTHFSA0A0A6YYL1 179 aa18.01■□□□□ 0.47
COL18A1-201ENST00000342220 BCANQ96GW7 911 aa18.01■□□□□ 0.47
COL18A1-201ENST00000342220 MAST1Q9Y2H9 1570 aa18.01■□□□□ 0.47
COL18A1-201ENST00000342220 SAFB2Q14151 953 aaKnown RBP eCLIP17.99■□□□□ 0.47
COL18A1-201ENST00000342220 ROCK2O75116 1388 aaKnown RBP17.97■□□□□ 0.47
COL18A1-201ENST00000342220 WASHC2AQ641Q2 1341 aa17.96■□□□□ 0.47
COL18A1-201ENST00000342220 ABCA9Q8IUA7 1624 aa17.94■□□□□ 0.46
COL18A1-201ENST00000342220 FAM9BQ8IZU0 186 aa17.94■□□□□ 0.46
COL18A1-201ENST00000342220 RPRD2Q5VT52 1461 aaKnown RBP17.93■□□□□ 0.46
COL18A1-201ENST00000342220 FBXO31Q5XUX0 539 aaPredicted RBP17.93■□□□□ 0.46
COL18A1-201ENST00000342220 STK26Q9P289 416 aa17.92■□□□□ 0.46
COL18A1-201ENST00000342220 USP47Q96K76 1375 aa17.91■□□□□ 0.46
COL18A1-201ENST00000342220 FAM135AQ9P2D6 1515 aa17.91■□□□□ 0.46
COL18A1-201ENST00000342220 PLXNC1O60486 1568 aa17.91■□□□□ 0.46
COL18A1-201ENST00000342220 FKBP8Q14318 412 aa17.9■□□□□ 0.46
COL18A1-201ENST00000342220 DHX29Q7Z478 1369 aaKnown RBP17.89■□□□□ 0.46
COL18A1-201ENST00000342220 KDM5DQ9BY66 1539 aa17.89■□□□□ 0.45
COL18A1-201ENST00000342220 TMEM132EQ6IEE7 984 aa17.89■□□□□ 0.45
COL18A1-201ENST00000342220 CFAP65Q6ZU64 1925 aaKnown RBP17.89■□□□□ 0.45
COL18A1-201ENST00000342220 TSPOAP1O95153 1857 aa17.88■□□□□ 0.45
COL18A1-201ENST00000342220 CFAP70Q5T0N1 1121 aa17.88■□□□□ 0.45
COL18A1-201ENST00000342220 ABCC1P33527 1531 aa17.88■□□□□ 0.45
COL18A1-201ENST00000342220 RIMBP3CA6NJZ7 1639 aa17.88■□□□□ 0.45
COL18A1-201ENST00000342220 RIMBP3BA6NNM3 1639 aa17.88■□□□□ 0.45
COL18A1-201ENST00000342220 RIMBP3Q9UFD9 1639 aa17.88■□□□□ 0.45
COL18A1-201ENST00000342220 CCER2I3L3R5 266 aa17.88■□□□□ 0.45
COL18A1-201ENST00000342220 YEATS2Q9ULM3 1422 aa17.87■□□□□ 0.45
COL18A1-201ENST00000342220 SALL2Q9Y467 1007 aaPredicted RBP17.87■□□□□ 0.45
COL18A1-201ENST00000342220 KIF7Q2M1P5 1343 aa17.86■□□□□ 0.45
COL18A1-201ENST00000342220 TRAK1Q9UPV9 953 aa17.86■□□□□ 0.45
COL18A1-201ENST00000342220 ZNF518AQ6AHZ1 1483 aa17.84■□□□□ 0.45
COL18A1-201ENST00000342220 DUOX2Q9NRD8 1548 aa17.84■□□□□ 0.45
COL18A1-201ENST00000342220 MRS2Q9HD23 443 aa17.83■□□□□ 0.45
COL18A1-201ENST00000342220 ATP7AQ04656 1500 aa17.83■□□□□ 0.45
COL18A1-201ENST00000342220 CC2D1BQ5T0F9 858 aaKnown RBP17.83■□□□□ 0.44
COL18A1-201ENST00000342220 ANO8Q9HCE9 1232 aaPredicted RBP17.83■□□□□ 0.44
COL18A1-201ENST00000342220 CEBPAP49715 358 aaPredicted RBP17.82■□□□□ 0.44
COL18A1-201ENST00000342220 A2MP01023 1474 aa17.82■□□□□ 0.44
COL18A1-201ENST00000342220 HNRNPUQ00839 825 aaKnown RBP eCLIP17.81■□□□□ 0.44
COL18A1-201ENST00000342220 TMC1Q8TDI8 760 aa17.81■□□□□ 0.44
COL18A1-201ENST00000342220 UNC13BO14795 1591 aa17.81■□□□□ 0.44
COL18A1-201ENST00000342220 ADGRF5Q8IZF2 1346 aa17.8■□□□□ 0.44
COL18A1-201ENST00000342220 CCDC184Q52MB2 194 aa17.8■□□□□ 0.44
COL18A1-201ENST00000342220 POGZQ7Z3K3 1410 aa17.79■□□□□ 0.44
COL18A1-201ENST00000342220 ERBINQ96RT1 1412 aa17.79■□□□□ 0.44
COL18A1-201ENST00000342220 IDI1Q13907 227 aa17.78■□□□□ 0.44
COL18A1-201ENST00000342220 TEX14Q8IWB6 1497 aa17.78■□□□□ 0.44
COL18A1-201ENST00000342220 PLA2R1Q13018 1463 aa17.77■□□□□ 0.44
COL18A1-201ENST00000342220 CCDC7Q96M83 1385 aa17.77■□□□□ 0.43
COL18A1-201ENST00000342220 NEFLP07196 543 aa17.77■□□□□ 0.43
COL18A1-201ENST00000342220 CFAP74Q9C0B2 1584 aa17.76■□□□□ 0.43
COL18A1-201ENST00000342220 ZFYVE16Q7Z3T8 1539 aa17.76■□□□□ 0.43
COL18A1-201ENST00000342220 MAGI2Q86UL8 1455 aa17.75■□□□□ 0.43
COL18A1-201ENST00000342220 UGGT1Q9NYU2 1555 aa17.75■□□□□ 0.43
COL18A1-201ENST00000342220 INO80Q9ULG1 1556 aaPredicted RBP17.75■□□□□ 0.43
COL18A1-201ENST00000342220 RTEL1-TNFRSF6BF6WH68 1400 aa17.75■□□□□ 0.43
COL18A1-201ENST00000342220 TNNT2P45379 298 aaPredicted RBP17.74■□□□□ 0.43
COL18A1-201ENST00000342220 DEPDC5O75140 1603 aa17.72■□□□□ 0.43
COL18A1-201ENST00000342220 TMF1P82094 1093 aa17.71■□□□□ 0.43
COL18A1-201ENST00000342220 IQGAP3Q86VI3 1631 aa17.7■□□□□ 0.42
COL18A1-201ENST00000342220 MAP3K4Q9Y6R4 1608 aa17.7■□□□□ 0.42
COL18A1-201ENST00000342220 GLI2P10070 1586 aa17.7■□□□□ 0.42
COL18A1-201ENST00000342220 BCORL1Q5H9F3 1711 aa17.69■□□□□ 0.42
COL18A1-201ENST00000342220 NUTM2FA1L443 756 aa17.69■□□□□ 0.42
COL18A1-201ENST00000342220 PANK3Q9H999 370 aa17.69■□□□□ 0.42
COL18A1-201ENST00000342220 PRKRIP1Q9H875 184 aaPredicted RBP17.68■□□□□ 0.42
COL18A1-201ENST00000342220 RBM19Q9Y4C8 960 aaKnown RBP17.67■□□□□ 0.42
COL18A1-201ENST00000342220 EIF2AK4Q9P2K8 1649 aaKnown RBP17.67■□□□□ 0.42
COL18A1-201ENST00000342220 PLEKHG5O94827 1062 aa17.67■□□□□ 0.42
COL18A1-201ENST00000342220 POGKQ9P215 609 aa17.67■□□□□ 0.42
COL18A1-201ENST00000342220 IRX6P78412 446 aaPredicted RBP17.65■□□□□ 0.42
COL18A1-201ENST00000342220 KDM5CP41229 1560 aa17.65■□□□□ 0.42
COL18A1-201ENST00000342220 NOS1P29475 1434 aa17.64■□□□□ 0.41
COL18A1-201ENST00000342220 NPATQ14207 1427 aa17.64■□□□□ 0.41
COL18A1-201ENST00000342220 ATP10AO60312 1499 aa17.64■□□□□ 0.41
COL18A1-201ENST00000342220 NEO1Q92859 1461 aa17.64■□□□□ 0.41
COL18A1-201ENST00000342220 COL17A1Q9UMD9 1497 aaPredicted RBP17.64■□□□□ 0.41
COL18A1-201ENST00000342220 MINK1Q8N4C8 1332 aaPredicted RBP17.63■□□□□ 0.41
COL18A1-201ENST00000342220 PRAG1Q86YV5 1406 aa17.63■□□□□ 0.41
COL18A1-201ENST00000342220 SRPK2P78362 688 aaKnown RBP17.62■□□□□ 0.41
COL18A1-201ENST00000342220 VWDEQ8N2E2 1590 aa17.61■□□□□ 0.41
COL18A1-201ENST00000342220 VGFO15240 615 aaPredicted RBP17.61■□□□□ 0.41
COL18A1-201ENST00000342220 KNSTRNQ9Y448 316 aa17.61■□□□□ 0.41
COL18A1-201ENST00000342220 KIDINS220Q9ULH0 1771 aa17.59■□□□□ 0.41
COL18A1-201ENST00000342220 DISP3Q9P2K9 1392 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms