RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 MYH16Q9H6N6 1097 aa4.21□□□□□ -1.73
CSMD3-202ENST00000339701 GTF2E1P29083 439 aaPredicted RBP4.21□□□□□ -1.74
CSMD3-202ENST00000339701 KIF1BO60333 1816 aa4.21□□□□□ -1.74
CSMD3-202ENST00000339701 ZMYM4Q5VZL5 1548 aa4.21□□□□□ -1.74
CSMD3-202ENST00000339701 CASC1Q6TDU7 716 aa4.21□□□□□ -1.74
CSMD3-202ENST00000339701 MTERF4Q7Z6M4 381 aaKnown RBP4.21□□□□□ -1.74
CSMD3-202ENST00000339701 SAMD9Q5K651 1589 aa4.21□□□□□ -1.74
CSMD3-202ENST00000339701 CROCC2H7BZ55 1655 aa4.2□□□□□ -1.74
CSMD3-202ENST00000339701 ARHGAP35Q9NRY4 1499 aa4.2□□□□□ -1.74
CSMD3-202ENST00000339701 CCAR1Q8IX12 1150 aaKnown RBP4.2□□□□□ -1.74
CSMD3-202ENST00000339701 MTUS2Q5JR59 1369 aa4.2□□□□□ -1.74
CSMD3-202ENST00000339701 GOLGA6L1Q8N7Z2 621 aa4.2□□□□□ -1.74
CSMD3-202ENST00000339701 KIAA1210Q9ULL0 1709 aa4.2□□□□□ -1.74
CSMD3-202ENST00000339701 ABCC2Q92887 1545 aa4.2□□□□□ -1.74
CSMD3-202ENST00000339701 NEUROD2Q15784 382 aa4.2□□□□□ -1.74
CSMD3-202ENST00000339701 GGT6Q6P531 493 aa4.2□□□□□ -1.74
CSMD3-202ENST00000339701 HTATSF1O43719 755 aaKnown RBP4.2□□□□□ -1.74
CSMD3-202ENST00000339701 PAXIP1Q6ZW49 1069 aaPredicted RBP4.2□□□□□ -1.74
CSMD3-202ENST00000339701 NGLY1Q96IV0 654 aa4.19□□□□□ -1.74
CSMD3-202ENST00000339701 EIF3AQ14152 1382 aaKnown RBP4.19□□□□□ -1.74
CSMD3-202ENST00000339701 BCORL1Q5H9F3 1711 aa4.19□□□□□ -1.74
CSMD3-202ENST00000339701 JPH4Q96JJ6 628 aa4.19□□□□□ -1.74
CSMD3-202ENST00000339701 ADAMTS12P58397 1594 aa4.19□□□□□ -1.74
CSMD3-202ENST00000339701 ANKRD30BQ9BXX2 1392 aa4.19□□□□□ -1.74
CSMD3-202ENST00000339701 EIF4G3O43432 1585 aaKnown RBP4.19□□□□□ -1.74
CSMD3-202ENST00000339701 ARHGEF5Q12774 1597 aa4.18□□□□□ -1.74
CSMD3-202ENST00000339701 PDIA4P13667 645 aaKnown RBP4.18□□□□□ -1.74
CSMD3-202ENST00000339701 NBPF8Q3BBV2 869 aa4.18□□□□□ -1.74
CSMD3-202ENST00000339701 NBPF14Q5TI25 921 aa4.18□□□□□ -1.74
CSMD3-202ENST00000339701 CFDP1Q9UEE9 299 aaPredicted RBP4.18□□□□□ -1.74
CSMD3-202ENST00000339701 EFCAB2Q5VUJ9 269 aa4.18□□□□□ -1.74
CSMD3-202ENST00000339701 UGGT2Q9NYU1 1516 aa4.18□□□□□ -1.74
CSMD3-202ENST00000339701 ARHGEF12Q9NZN5 1544 aa4.18□□□□□ -1.74
CSMD3-202ENST00000339701 UBAP1LF5GYI3 381 aa4.18□□□□□ -1.74
CSMD3-202ENST00000339701 AAMPQ13685 434 aa4.18□□□□□ -1.74
CSMD3-202ENST00000339701 NCOA2Q15596 1464 aa4.17□□□□□ -1.74
CSMD3-202ENST00000339701 TIAM1Q13009 1591 aa4.17□□□□□ -1.74
CSMD3-202ENST00000339701 NAP1L2Q9ULW6 460 aaPredicted RBP4.17□□□□□ -1.74
CSMD3-202ENST00000339701 NKTRP30414 1462 aaKnown RBP4.17□□□□□ -1.74
CSMD3-202ENST00000339701 PDE3BQ13370 1112 aa4.17□□□□□ -1.74
CSMD3-202ENST00000339701 GOLGA6L3A6NEY3 463 aa4.17□□□□□ -1.74
CSMD3-202ENST00000339701 EIF3DO15371 548 aaKnown RBP eCLIP4.17□□□□□ -1.74
CSMD3-202ENST00000339701 CNKSR2Q8WXI2 1034 aa4.17□□□□□ -1.74
CSMD3-202ENST00000339701 KIF3AQ9Y496 699 aa4.17□□□□□ -1.74
CSMD3-202ENST00000339701 IGF1RP08069 1367 aa4.17□□□□□ -1.74
CSMD3-202ENST00000339701 PLXNC1O60486 1568 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 UNC13BO14795 1591 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 SYAP1Q96A49 352 aaPredicted RBP4.16□□□□□ -1.74
CSMD3-202ENST00000339701 LRRIQ1Q96JM4 1722 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 DISP3Q9P2K9 1392 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 FGD5Q6ZNL6 1462 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 CCDC144AA2RUR9 1427 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 ROCK1Q13464 1354 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 TMC1Q8TDI8 760 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 CASKIN1Q8WXD9 1431 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 GOLGA6L4A6NEF3 574 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 RAPGEF6Q8TEU7 1601 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 WASHC2CQ9Y4E1 1318 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 PSME1Q06323 249 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 CAGE1Q8TC20 777 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 ISY1Q9ULR0 285 aaKnown RBP4.16□□□□□ -1.74
CSMD3-202ENST00000339701 CTDP1Q9Y5B0 961 aaPredicted RBP4.16□□□□□ -1.74
CSMD3-202ENST00000339701 SYNJ2O15056 1496 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 TRIM34Q9BYJ4 488 aa4.16□□□□□ -1.74
CSMD3-202ENST00000339701 MROH1Q8NDA8 1641 aa4.15□□□□□ -1.74
CSMD3-202ENST00000339701 SMG6Q86US8 1419 aaKnown RBP4.15□□□□□ -1.74
CSMD3-202ENST00000339701 DHX37Q8IY37 1157 aaKnown RBP4.15□□□□□ -1.74
CSMD3-202ENST00000339701 URB2Q14146 1524 aaKnown RBP4.15□□□□□ -1.74
CSMD3-202ENST00000339701 CDC42BPAQ5VT25 1732 aa4.15□□□□□ -1.74
CSMD3-202ENST00000339701 SETD1BQ9UPS6 1966 aaKnown RBP4.15□□□□□ -1.75
CSMD3-202ENST00000339701 TONSLQ96HA7 1378 aa4.15□□□□□ -1.75
CSMD3-202ENST00000339701 E9PSI1 815 aa4.15□□□□□ -1.75
CSMD3-202ENST00000339701 EPRSP07814 1512 aaKnown RBP4.15□□□□□ -1.75
CSMD3-202ENST00000339701 CSPP1Q1MSJ5 1256 aa4.15□□□□□ -1.75
CSMD3-202ENST00000339701 THEMISQ8N1K5 641 aaPredicted RBP4.15□□□□□ -1.75
CSMD3-202ENST00000339701 NGDNQ8NEJ9 315 aaKnown RBP4.15□□□□□ -1.75
CSMD3-202ENST00000339701 AIDAQ96BJ3 306 aa4.15□□□□□ -1.75
CSMD3-202ENST00000339701 MAST1Q9Y2H9 1570 aa4.14□□□□□ -1.75
CSMD3-202ENST00000339701 MAP7D2Q96T17 732 aa4.14□□□□□ -1.75
CSMD3-202ENST00000339701 TULP1O00294 542 aaPredicted RBP4.14□□□□□ -1.75
CSMD3-202ENST00000339701 TSPOAP1O95153 1857 aa4.14□□□□□ -1.75
CSMD3-202ENST00000339701 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.14□□□□□ -1.75
CSMD3-202ENST00000339701 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.14□□□□□ -1.75
CSMD3-202ENST00000339701 GAPVD1Q14C86 1478 aa4.14□□□□□ -1.75
CSMD3-202ENST00000339701 HNRNPMP52272 730 aaKnown RBP eCLIP4.14□□□□□ -1.75
CSMD3-202ENST00000339701 PHF14O94880 888 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 NCBP3Q53F19 620 aaKnown RBP4.13□□□□□ -1.75
CSMD3-202ENST00000339701 CALD1Q05682 793 aaKnown RBP4.13□□□□□ -1.75
CSMD3-202ENST00000339701 BCL11BQ9C0K0 894 aaPredicted RBP4.13□□□□□ -1.75
CSMD3-202ENST00000339701 RRBP1Q9P2E9 1410 aaKnown RBP4.13□□□□□ -1.75
CSMD3-202ENST00000339701 SYTL4Q96C24 671 aaPredicted RBP4.13□□□□□ -1.75
CSMD3-202ENST00000339701 ZRANB1Q9UGI0 708 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 PPP6R1Q9UPN7 881 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 PLEKHG2Q9H7P9 1386 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 GPS2Q13227 327 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 ANKLE2Q86XL3 938 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 ITSN1Q15811 1721 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 INSRP06213 1382 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 IRX6P78412 446 aaPredicted RBP4.13□□□□□ -1.75
CSMD3-202ENST00000339701 CFAP53Q96M91 514 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms