RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 CCDC7Q96M83 1385 aa17.49■□□□□ 0.39
LIMK1-201ENST00000336180 ST20-MTHFSA0A0A6YYL1 179 aa17.49■□□□□ 0.39
LIMK1-201ENST00000336180 FAM135AQ9P2D6 1515 aa17.49■□□□□ 0.39
LIMK1-201ENST00000336180 ARHGEF5Q12774 1597 aa17.48■□□□□ 0.39
LIMK1-201ENST00000336180 WDR7Q9Y4E6 1490 aa17.46■□□□□ 0.39
LIMK1-201ENST00000336180 HNRNPUQ00839 825 aaKnown RBP eCLIP17.46■□□□□ 0.39
LIMK1-201ENST00000336180 CCDC144AA2RUR9 1427 aa17.45■□□□□ 0.38
LIMK1-201ENST00000336180 FANCAO15360 1455 aa17.45■□□□□ 0.38
LIMK1-201ENST00000336180 UHRF1BP1LA0JNW5 1464 aa17.44■□□□□ 0.38
LIMK1-201ENST00000336180 RAPGEF3O95398 923 aa17.43■□□□□ 0.38
LIMK1-201ENST00000336180 GGT6Q6P531 493 aa17.42■□□□□ 0.38
LIMK1-201ENST00000336180 PLA2R1Q13018 1463 aa17.42■□□□□ 0.38
LIMK1-201ENST00000336180 ROCK2O75116 1388 aaKnown RBP17.42■□□□□ 0.38
LIMK1-201ENST00000336180 CHGAP10645 457 aaKnown RBP17.41■□□□□ 0.38
LIMK1-201ENST00000336180 MRS2Q9HD23 443 aa17.41■□□□□ 0.38
LIMK1-201ENST00000336180 ABCC1P33527 1531 aa17.39■□□□□ 0.37
LIMK1-201ENST00000336180 ADGRL1O94910 1474 aa17.39■□□□□ 0.37
LIMK1-201ENST00000336180 SPATA31E1Q6ZUB1 1445 aa17.39■□□□□ 0.37
LIMK1-201ENST00000336180 CCER2I3L3R5 266 aa17.39■□□□□ 0.37
LIMK1-201ENST00000336180 PRKRIP1Q9H875 184 aaPredicted RBP17.39■□□□□ 0.37
LIMK1-201ENST00000336180 CNTLNQ9NXG0 1405 aa17.39■□□□□ 0.37
LIMK1-201ENST00000336180 IRX6P78412 446 aaPredicted RBP17.38■□□□□ 0.37
LIMK1-201ENST00000336180 SUPT16HQ9Y5B9 1047 aaKnown RBP17.37■□□□□ 0.37
LIMK1-201ENST00000336180 NUTM2DQ5VT03 806 aaPredicted RBP17.36■□□□□ 0.37
LIMK1-201ENST00000336180 FKBP8Q14318 412 aa17.35■□□□□ 0.37
LIMK1-201ENST00000336180 BCORL1Q5H9F3 1711 aa17.33■□□□□ 0.37
LIMK1-201ENST00000336180 DUOX2Q9NRD8 1548 aa17.33■□□□□ 0.37
LIMK1-201ENST00000336180 CD109Q6YHK3 1445 aa17.33■□□□□ 0.36
LIMK1-201ENST00000336180 KDM5DQ9BY66 1539 aa17.32■□□□□ 0.36
LIMK1-201ENST00000336180 A2MP01023 1474 aa17.31■□□□□ 0.36
LIMK1-201ENST00000336180 SALL2Q9Y467 1007 aaPredicted RBP17.29■□□□□ 0.36
LIMK1-201ENST00000336180 ZFYVE16Q7Z3T8 1539 aa17.29■□□□□ 0.36
LIMK1-201ENST00000336180 ERBINQ96RT1 1412 aa17.28■□□□□ 0.36
LIMK1-201ENST00000336180 MAST1Q9Y2H9 1570 aa17.28■□□□□ 0.36
LIMK1-201ENST00000336180 UGGT1Q9NYU2 1555 aa17.28■□□□□ 0.36
LIMK1-201ENST00000336180 PRAG1Q86YV5 1406 aa17.27■□□□□ 0.35
LIMK1-201ENST00000336180 RALGAPBQ86X10 1494 aa17.26■□□□□ 0.35
LIMK1-201ENST00000336180 ATP7AQ04656 1500 aa17.26■□□□□ 0.35
LIMK1-201ENST00000336180 PLXNC1O60486 1568 aa17.26■□□□□ 0.35
LIMK1-201ENST00000336180 CC2D1BQ5T0F9 858 aaKnown RBP17.26■□□□□ 0.35
LIMK1-201ENST00000336180 UNC13BO14795 1591 aa17.25■□□□□ 0.35
LIMK1-201ENST00000336180 CFAP65Q6ZU64 1925 aaKnown RBP17.25■□□□□ 0.35
LIMK1-201ENST00000336180 KDM5CP41229 1560 aa17.25■□□□□ 0.35
LIMK1-201ENST00000336180 FAM69CQ0P6D2 419 aa17.25■□□□□ 0.35
LIMK1-201ENST00000336180 UHRF1BP1Q6BDS2 1440 aa17.24■□□□□ 0.35
LIMK1-201ENST00000336180 KANK1Q14678 1352 aa17.23■□□□□ 0.35
LIMK1-201ENST00000336180 CFAP70Q5T0N1 1121 aa17.23■□□□□ 0.35
LIMK1-201ENST00000336180 ABCA9Q8IUA7 1624 aa17.23■□□□□ 0.35
LIMK1-201ENST00000336180 DHX29Q7Z478 1369 aaKnown RBP17.22■□□□□ 0.35
LIMK1-201ENST00000336180 DISP3Q9P2K9 1392 aa17.22■□□□□ 0.35
LIMK1-201ENST00000336180 IQGAP3Q86VI3 1631 aa17.22■□□□□ 0.35
LIMK1-201ENST00000336180 ATP10AO60312 1499 aa17.21■□□□□ 0.35
LIMK1-201ENST00000336180 MLECQ14165 292 aa17.21■□□□□ 0.34
LIMK1-201ENST00000336180 WASHC2CQ9Y4E1 1318 aa17.2■□□□□ 0.34
LIMK1-201ENST00000336180 ADGRF5Q8IZF2 1346 aa17.2■□□□□ 0.34
LIMK1-201ENST00000336180 TMC1Q8TDI8 760 aa17.19■□□□□ 0.34
LIMK1-201ENST00000336180 RTEL1-TNFRSF6BF6WH68 1400 aa17.18■□□□□ 0.34
LIMK1-201ENST00000336180 E9PCH4 1651 aa17.18■□□□□ 0.34
LIMK1-201ENST00000336180 TESK2Q96S53 571 aa17.17■□□□□ 0.34
LIMK1-201ENST00000336180 PANK3Q9H999 370 aa17.17■□□□□ 0.34
LIMK1-201ENST00000336180 NEFLP07196 543 aa17.16■□□□□ 0.34
LIMK1-201ENST00000336180 TMEM132EQ6IEE7 984 aa17.16■□□□□ 0.34
LIMK1-201ENST00000336180 MAGI2Q86UL8 1455 aa17.15■□□□□ 0.34
LIMK1-201ENST00000336180 INO80Q9ULG1 1556 aaPredicted RBP17.14■□□□□ 0.33
LIMK1-201ENST00000336180 ZNF518AQ6AHZ1 1483 aa17.14■□□□□ 0.33
LIMK1-201ENST00000336180 SAFB2Q14151 953 aaKnown RBP eCLIP17.13■□□□□ 0.33
LIMK1-201ENST00000336180 KIDINS220Q9ULH0 1771 aa17.13■□□□□ 0.33
LIMK1-201ENST00000336180 YEATS2Q9ULM3 1422 aa17.13■□□□□ 0.33
LIMK1-201ENST00000336180 PLPPR3Q6T4P5 718 aa17.13■□□□□ 0.33
LIMK1-201ENST00000336180 CLTCL1P53675 1640 aa17.12■□□□□ 0.33
LIMK1-201ENST00000336180 TRAK1Q9UPV9 953 aa17.12■□□□□ 0.33
LIMK1-201ENST00000336180 POGZQ7Z3K3 1410 aa17.12■□□□□ 0.33
LIMK1-201ENST00000336180 TRPM1Q7Z4N2 1603 aa17.11■□□□□ 0.33
LIMK1-201ENST00000336180 TMF1P82094 1093 aa17.11■□□□□ 0.33
LIMK1-201ENST00000336180 ARAP3Q8WWN8 1544 aa17.11■□□□□ 0.33
LIMK1-201ENST00000336180 PRDM15P57071 1507 aaPredicted RBP17.1■□□□□ 0.33
LIMK1-201ENST00000336180 FBXO31Q5XUX0 539 aaPredicted RBP17.09■□□□□ 0.33
LIMK1-201ENST00000336180 TSPOAP1O95153 1857 aa17.07■□□□□ 0.32
LIMK1-201ENST00000336180 MROH1Q8NDA8 1641 aa17.06■□□□□ 0.32
LIMK1-201ENST00000336180 STK26Q9P289 416 aa17.06■□□□□ 0.32
LIMK1-201ENST00000336180 CEP152O94986 1710 aa17.05■□□□□ 0.32
LIMK1-201ENST00000336180 NOS1P29475 1434 aa17.05■□□□□ 0.32
LIMK1-201ENST00000336180 NPATQ14207 1427 aa17.05■□□□□ 0.32
LIMK1-201ENST00000336180 PTPRTO14522 1441 aa17.05■□□□□ 0.32
LIMK1-201ENST00000336180 PER1O15534 1290 aaPredicted RBP17.05■□□□□ 0.32
LIMK1-201ENST00000336180 PNISRQ8TF01 805 aaKnown RBP17.05■□□□□ 0.32
LIMK1-201ENST00000336180 TRPM2O94759 1503 aa17.05■□□□□ 0.32
LIMK1-201ENST00000336180 SPHKAPQ2M3C7 1700 aa17.04■□□□□ 0.32
LIMK1-201ENST00000336180 FRMPD1Q5SYB0 1578 aa17.04■□□□□ 0.32
LIMK1-201ENST00000336180 GPRASP1Q5JY77 1395 aa17.04■□□□□ 0.32
LIMK1-201ENST00000336180 TNNT2P45379 298 aaPredicted RBP17.03■□□□□ 0.32
LIMK1-201ENST00000336180 PPRC1Q5VV67 1664 aaKnown RBP17.03■□□□□ 0.32
LIMK1-201ENST00000336180 RIMBP3CA6NJZ7 1639 aa17.03■□□□□ 0.32
LIMK1-201ENST00000336180 RIMBP3BA6NNM3 1639 aa17.03■□□□□ 0.32
LIMK1-201ENST00000336180 RIMBP3Q9UFD9 1639 aa17.03■□□□□ 0.32
LIMK1-201ENST00000336180 IDI1Q13907 227 aa17.02■□□□□ 0.32
LIMK1-201ENST00000336180 ABCA6Q8N139 1617 aa17.02■□□□□ 0.31
LIMK1-201ENST00000336180 TET3O43151 1660 aa17.02■□□□□ 0.31
LIMK1-201ENST00000336180 KTN1Q86UP2 1357 aaKnown RBP17.01■□□□□ 0.31
LIMK1-201ENST00000336180 ARID4BQ4LE39 1312 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms