RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 CHMP7Q8WUX9 453 aaPredicted RBP25.65■■□□□ 1.7
RTN4-201ENST00000317610 TRPM1Q7Z4N2 1603 aa25.64■■□□□ 1.7
RTN4-201ENST00000317610 JPH4Q96JJ6 628 aa25.64■■□□□ 1.69
RTN4-201ENST00000317610 PAK3O75914 559 aaPredicted RBP25.62■■□□□ 1.69
RTN4-201ENST00000317610 TSPY4P0CV99 314 aa25.62■■□□□ 1.69
RTN4-201ENST00000317610 TSPY10P0CW01 314 aa25.62■■□□□ 1.69
RTN4-201ENST00000317610 PARD3Q8TEW0 1356 aa25.61■■□□□ 1.69
RTN4-201ENST00000317610 IPO9Q96P70 1041 aaKnown RBP25.6■■□□□ 1.69
RTN4-201ENST00000317610 DCAF11Q8TEB1 546 aa25.6■■□□□ 1.69
RTN4-201ENST00000317610 FAM135AQ9P2D6 1515 aa25.6■■□□□ 1.69
RTN4-201ENST00000317610 ANP32AP39687 249 aaKnown RBP25.59■■□□□ 1.69
RTN4-201ENST00000317610 RRP1P56182 461 aaKnown RBP25.59■■□□□ 1.69
RTN4-201ENST00000317610 PRAG1Q86YV5 1406 aa25.59■■□□□ 1.69
RTN4-201ENST00000317610 KDM2AQ9Y2K7 1162 aa25.59■■□□□ 1.69
RTN4-201ENST00000317610 LAMC1P11047 1609 aa25.58■■□□□ 1.68
RTN4-201ENST00000317610 DEKP35659 375 aaKnown RBP25.57■■□□□ 1.68
RTN4-201ENST00000317610 NLRP13Q86W25 1043 aa25.56■■□□□ 1.68
RTN4-201ENST00000317610 PDE3BQ13370 1112 aa25.55■■□□□ 1.68
RTN4-201ENST00000317610 CCDC141Q6ZP82 1450 aa25.55■■□□□ 1.68
RTN4-201ENST00000317610 GPRASP1Q5JY77 1395 aa25.55■■□□□ 1.68
RTN4-201ENST00000317610 SAMD9LQ8IVG5 1584 aa25.54■■□□□ 1.68
RTN4-201ENST00000317610 ZMYM4Q5VZL5 1548 aa25.54■■□□□ 1.68
RTN4-201ENST00000317610 INSRP06213 1382 aa25.54■■□□□ 1.68
RTN4-201ENST00000317610 SENP3-EIF4A1A0A087X0R7 540 aa25.54■■□□□ 1.68
RTN4-201ENST00000317610 PREX2Q70Z35 1606 aa25.53■■□□□ 1.68
RTN4-201ENST00000317610 CDC42BPBQ9Y5S2 1711 aa25.52■■□□□ 1.68
RTN4-201ENST00000317610 RCAN3Q9UKA8 241 aa25.52■■□□□ 1.68
RTN4-201ENST00000317610 UNC13BO14795 1591 aa25.52■■□□□ 1.68
RTN4-201ENST00000317610 HNRNPMP52272 730 aaKnown RBP eCLIP25.51■■□□□ 1.677e-7■■■■□ 22.8
RTN4-201ENST00000317610 COL17A1Q9UMD9 1497 aaPredicted RBP25.5■■□□□ 1.67
RTN4-201ENST00000317610 PER1O15534 1290 aaPredicted RBP25.49■■□□□ 1.67
RTN4-201ENST00000317610 PRDM15P57071 1507 aaPredicted RBP25.49■■□□□ 1.67
RTN4-201ENST00000317610 MAST1Q9Y2H9 1570 aa25.49■■□□□ 1.67
RTN4-201ENST00000317610 CCDC144AA2RUR9 1427 aa25.49■■□□□ 1.67
RTN4-201ENST00000317610 WASHC2CQ9Y4E1 1318 aa25.49■■□□□ 1.67
RTN4-201ENST00000317610 EXOC6Q8TAG9 804 aa25.48■■□□□ 1.67
RTN4-201ENST00000317610 TCERG1O14776 1098 aaKnown RBP25.48■■□□□ 1.67
RTN4-201ENST00000317610 RSPH4AQ5TD94 716 aa25.47■■□□□ 1.67
RTN4-201ENST00000317610 ZBTB47Q9UFB7 747 aaPredicted RBP25.47■■□□□ 1.67
RTN4-201ENST00000317610 PLA2R1Q13018 1463 aa25.46■■□□□ 1.67
RTN4-201ENST00000317610 FBLN2P98095 1184 aa25.46■■□□□ 1.67
RTN4-201ENST00000317610 BLMP54132 1417 aaPredicted RBP25.46■■□□□ 1.67
RTN4-201ENST00000317610 A2MP01023 1474 aa25.46■■□□□ 1.67
RTN4-201ENST00000317610 EIF2AK4Q9P2K8 1649 aaKnown RBP25.44■■□□□ 1.66
RTN4-201ENST00000317610 NBR1Q14596 966 aa25.43■■□□□ 1.66
RTN4-201ENST00000317610 MYO5CQ9NQX4 1742 aa25.43■■□□□ 1.66
RTN4-201ENST00000317610 ERCC6Q03468 1493 aa25.42■■□□□ 1.66
RTN4-201ENST00000317610 IQGAP3Q86VI3 1631 aa25.42■■□□□ 1.66
RTN4-201ENST00000317610 MS4A1P11836 297 aa25.4■■□□□ 1.66
RTN4-201ENST00000317610 NBPF1Q3BBV0 1214 aa25.4■■□□□ 1.66
RTN4-201ENST00000317610 TESK2Q96S53 571 aa25.39■■□□□ 1.66
RTN4-201ENST00000317610 PLEKHH2Q8IVE3 1493 aa25.39■■□□□ 1.65
RTN4-201ENST00000317610 PLXNC1O60486 1568 aa25.38■■□□□ 1.65
RTN4-201ENST00000317610 DISP3Q9P2K9 1392 aa25.37■■□□□ 1.65
RTN4-201ENST00000317610 SYCP2Q9BX26 1530 aa25.37■■□□□ 1.65
RTN4-201ENST00000317610 ATP10AO60312 1499 aa25.37■■□□□ 1.65
RTN4-201ENST00000317610 ERBINQ96RT1 1412 aa25.36■■□□□ 1.65
RTN4-201ENST00000317610 RNF17Q9BXT8 1623 aaKnown RBP25.35■■□□□ 1.65
RTN4-201ENST00000317610 PDE4AP27815 886 aa25.35■■□□□ 1.65
RTN4-201ENST00000317610 CDCA7LQ96GN5 454 aa25.34■■□□□ 1.65
RTN4-201ENST00000317610 BACH2Q9BYV9 841 aa25.34■■□□□ 1.65
RTN4-201ENST00000317610 SALL2Q9Y467 1007 aaPredicted RBP25.33■■□□□ 1.65
RTN4-201ENST00000317610 MAGI2Q86UL8 1455 aa25.33■■□□□ 1.65
RTN4-201ENST00000317610 TTC37Q6PGP7 1564 aa25.31■■□□□ 1.64
RTN4-201ENST00000317610 RGL3Q3MIN7 710 aa25.3■■□□□ 1.64
RTN4-201ENST00000317610 RTL5Q5HYW3 569 aaPredicted RBP25.3■■□□□ 1.64
RTN4-201ENST00000317610 PANK3Q9H999 370 aa25.29■■□□□ 1.64
RTN4-201ENST00000317610 ARHGAP5Q13017 1502 aa25.28■■□□□ 1.64
RTN4-201ENST00000317610 CC2D1BQ5T0F9 858 aaKnown RBP25.28■■□□□ 1.64
RTN4-201ENST00000317610 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.27■■□□□ 1.647e-15■■□□□ 12
RTN4-201ENST00000317610 TMF1P82094 1093 aa25.27■■□□□ 1.64
RTN4-201ENST00000317610 DUOX2Q9NRD8 1548 aa25.27■■□□□ 1.64
RTN4-201ENST00000317610 NPM2Q86SE8 214 aaKnown RBP25.21■■□□□ 1.63
RTN4-201ENST00000317610 CRBNQ96SW2 442 aa25.21■■□□□ 1.63
RTN4-201ENST00000317610 IQGAP1P46940 1657 aa25.21■■□□□ 1.63
RTN4-201ENST00000317610 WDR7Q9Y4E6 1490 aa25.21■■□□□ 1.63
RTN4-201ENST00000317610 PLIN1O60240 522 aa25.2■■□□□ 1.63
RTN4-201ENST00000317610 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.2■■□□□ 1.62
RTN4-201ENST00000317610 MADDQ8WXG6 1647 aa25.18■■□□□ 1.62
RTN4-201ENST00000317610 USP35Q9P2H5 1018 aa25.18■■□□□ 1.62
RTN4-201ENST00000317610 CLASP1Q7Z460 1538 aa25.17■■□□□ 1.62
RTN4-201ENST00000317610 SYNMO15061 1565 aa25.15■■□□□ 1.62
RTN4-201ENST00000317610 SHROOM2Q13796 1616 aa25.15■■□□□ 1.62
RTN4-201ENST00000317610 KDM2BQ8NHM5 1336 aa25.14■■□□□ 1.62
RTN4-201ENST00000317610 ADAMTS8Q9UP79 889 aa25.14■■□□□ 1.61
RTN4-201ENST00000317610 ZNF521Q96K83 1311 aa25.12■■□□□ 1.61
RTN4-201ENST00000317610 SPHKAPQ2M3C7 1700 aa25.11■■□□□ 1.61
RTN4-201ENST00000317610 PPP2R1AP30153 589 aa25.11■■□□□ 1.61
RTN4-201ENST00000317610 PLEKHH1Q9ULM0 1364 aa25.11■■□□□ 1.61
RTN4-201ENST00000317610 ABCC2Q92887 1545 aa25.1■■□□□ 1.61
RTN4-201ENST00000317610 PPM1GO15355 546 aaPredicted RBP25.1■■□□□ 1.61
RTN4-201ENST00000317610 DDRGK1Q96HY6 314 aa25.1■■□□□ 1.61
RTN4-201ENST00000317610 DUSP27Q5VZP5 1158 aa25.09■■□□□ 1.61
RTN4-201ENST00000317610 AMER1Q5JTC6 1135 aaPredicted RBP25.09■■□□□ 1.61
RTN4-201ENST00000317610 C20orf194Q5TEA3 1177 aa25.09■■□□□ 1.61
RTN4-201ENST00000317610 CEP152O94986 1710 aa25.08■■□□□ 1.61
RTN4-201ENST00000317610 PIK3C2GO75747 1445 aa25.08■■□□□ 1.61
RTN4-201ENST00000317610 SCAPERQ9BY12 1400 aa25.08■■□□□ 1.61
RTN4-201ENST00000317610 TRPM2O94759 1503 aa25.07■■□□□ 1.6
RTN4-201ENST00000317610 KNSTRNQ9Y448 316 aa25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms