RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 WDR43Q15061 677 aaKnown RBP eCLIP6.17□□□□□ -1.42
PTPN13-201ENST00000316707 KDM2BQ8NHM5 1336 aa6.17□□□□□ -1.42
PTPN13-201ENST00000316707 GCC2Q8IWJ2 1684 aa6.17□□□□□ -1.42
PTPN13-201ENST00000316707 NINLQ9Y2I6 1382 aa6.17□□□□□ -1.42
PTPN13-201ENST00000316707 TMF1P82094 1093 aa6.17□□□□□ -1.42
PTPN13-201ENST00000316707 TROQ12816 1431 aaPredicted RBP6.17□□□□□ -1.42
PTPN13-201ENST00000316707 GPRASP1Q5JY77 1395 aa6.17□□□□□ -1.42
PTPN13-201ENST00000316707 ADGRL2O95490 1459 aa6.16□□□□□ -1.42
PTPN13-201ENST00000316707 PZPP20742 1482 aa6.16□□□□□ -1.42
PTPN13-201ENST00000316707 PER1O15534 1290 aaPredicted RBP6.16□□□□□ -1.42
PTPN13-201ENST00000316707 DCAF11Q8TEB1 546 aa6.16□□□□□ -1.42
PTPN13-201ENST00000316707 ZMYM3Q14202 1370 aa6.16□□□□□ -1.42
PTPN13-201ENST00000316707 BLMP54132 1417 aaPredicted RBP6.15□□□□□ -1.42
PTPN13-201ENST00000316707 FRAT2O75474 233 aaPredicted RBP6.15□□□□□ -1.42
PTPN13-201ENST00000316707 KNSTRNQ9Y448 316 aa6.15□□□□□ -1.42
PTPN13-201ENST00000316707 PDE3AQ14432 1141 aa6.15□□□□□ -1.43
PTPN13-201ENST00000316707 PNNQ9H307 717 aaKnown RBP6.15□□□□□ -1.43
PTPN13-201ENST00000316707 CDCA7LQ96GN5 454 aa6.15□□□□□ -1.43
PTPN13-201ENST00000316707 PLEKHD1A6NEE1 506 aa6.14□□□□□ -1.43
PTPN13-201ENST00000316707 C8orf34Q49A92 452 aa6.14□□□□□ -1.43
PTPN13-201ENST00000316707 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.14□□□□□ -1.43
PTPN13-201ENST00000316707 MAGI3Q5TCQ9 1506 aa6.14□□□□□ -1.43
PTPN13-201ENST00000316707 ZNF644Q9H582 1327 aaPredicted RBP6.14□□□□□ -1.43
PTPN13-201ENST00000316707 ZNF777Q9ULD5 760 aaPredicted RBP6.13□□□□□ -1.43
PTPN13-201ENST00000316707 KDM2AQ9Y2K7 1162 aa6.13□□□□□ -1.43
PTPN13-201ENST00000316707 E9PSI1 815 aa6.13□□□□□ -1.43
PTPN13-201ENST00000316707 KIAA0586Q9BVV6 1533 aa6.13□□□□□ -1.43
PTPN13-201ENST00000316707 RGS3P49796 1198 aa6.13□□□□□ -1.43
PTPN13-201ENST00000316707 GOLGA6L3A6NEY3 463 aa6.13□□□□□ -1.43
PTPN13-201ENST00000316707 PLIN1O60240 522 aa6.13□□□□□ -1.43
PTPN13-201ENST00000316707 SHANK2Q9UPX8 1470 aa6.12□□□□□ -1.43
PTPN13-201ENST00000316707 CCDC144AA2RUR9 1427 aa6.12□□□□□ -1.43
PTPN13-201ENST00000316707 NUP160Q12769 1436 aa6.12□□□□□ -1.43
PTPN13-201ENST00000316707 NPC1L1Q9UHC9 1359 aa6.12□□□□□ -1.43
PTPN13-201ENST00000316707 PTMSP20962 102 aa6.12□□□□□ -1.43
PTPN13-201ENST00000316707 DUSP27Q5VZP5 1158 aa6.12□□□□□ -1.43
PTPN13-201ENST00000316707 DNMT1P26358 1616 aaKnown RBP6.12□□□□□ -1.43
PTPN13-201ENST00000316707 PMFBP1Q8TBY8 1022 aa6.12□□□□□ -1.43
PTPN13-201ENST00000316707 CLCN1P35523 988 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 PANK3Q9H999 370 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 RRP9O43818 475 aaKnown RBP6.11□□□□□ -1.43
PTPN13-201ENST00000316707 SLC4A3P48751 1232 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 ZNF521Q96K83 1311 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 MRE11P49959 708 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 SLFN5Q08AF3 891 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 KIF14Q15058 1648 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 KIF21AQ7Z4S6 1674 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 WDR62O43379 1518 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 IQGAP2Q13576 1575 aa6.11□□□□□ -1.43
PTPN13-201ENST00000316707 PTPRGP23470 1445 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 ARID3CA6NKF2 412 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 ADAMTS8Q9UP79 889 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 NESP48681 1621 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 CANXP27824 592 aaKnown RBP6.1□□□□□ -1.43
PTPN13-201ENST00000316707 CDK13Q14004 1512 aaKnown RBP6.1□□□□□ -1.43
PTPN13-201ENST00000316707 CLUAP1Q96AJ1 413 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 TESK2Q96S53 571 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 RWDD1Q9H446 243 aaPredicted RBP6.1□□□□□ -1.43
PTPN13-201ENST00000316707 CHMP5Q9NZZ3 219 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 CARMIL2Q6F5E8 1435 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 GPATCH8Q9UKJ3 1502 aaKnown RBP6.1□□□□□ -1.43
PTPN13-201ENST00000316707 CC2D1BQ5T0F9 858 aaKnown RBP6.1□□□□□ -1.43
PTPN13-201ENST00000316707 CAMSAP2Q08AD1 1489 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 KDM5CP41229 1560 aa6.1□□□□□ -1.43
PTPN13-201ENST00000316707 COL17A1Q9UMD9 1497 aaPredicted RBP6.09□□□□□ -1.43
PTPN13-201ENST00000316707 CTTNBP2Q8WZ74 1663 aa6.09□□□□□ -1.43
PTPN13-201ENST00000316707 PPP2R1AP30153 589 aa6.09□□□□□ -1.43
PTPN13-201ENST00000316707 URB2Q14146 1524 aaKnown RBP6.09□□□□□ -1.43
PTPN13-201ENST00000316707 PRAG1Q86YV5 1406 aa6.09□□□□□ -1.43
PTPN13-201ENST00000316707 DDX11L8A8MPP1 907 aa6.09□□□□□ -1.43
PTPN13-201ENST00000316707 HSP90AA1P07900 732 aaKnown RBP6.09□□□□□ -1.43
PTPN13-201ENST00000316707 NCBP3Q53F19 620 aaKnown RBP6.09□□□□□ -1.43
PTPN13-201ENST00000316707 NUP153P49790 1475 aaKnown RBP6.09□□□□□ -1.43
PTPN13-201ENST00000316707 PIK3C2GO75747 1445 aa6.09□□□□□ -1.43
PTPN13-201ENST00000316707 MYH16Q9H6N6 1097 aa6.09□□□□□ -1.43
PTPN13-201ENST00000316707 C9orf84Q5VXU9 1444 aa6.09□□□□□ -1.44
PTPN13-201ENST00000316707 SENP3-EIF4A1A0A087X0R7 540 aa6.09□□□□□ -1.44
PTPN13-201ENST00000316707 CENPJQ9HC77 1338 aaPredicted RBP6.08□□□□□ -1.44
PTPN13-201ENST00000316707 TRMT2AQ8IZ69 625 aaKnown RBP6.08□□□□□ -1.44
PTPN13-201ENST00000316707 C20orf194Q5TEA3 1177 aa6.08□□□□□ -1.44
PTPN13-201ENST00000316707 POGKQ9P215 609 aa6.08□□□□□ -1.44
PTPN13-201ENST00000316707 ERBINQ96RT1 1412 aa6.08□□□□□ -1.44
PTPN13-201ENST00000316707 KDM6BO15054 1643 aa6.08□□□□□ -1.44
PTPN13-201ENST00000316707 SKOR2Q2VWA4 1001 aaPredicted RBP6.08□□□□□ -1.44
PTPN13-201ENST00000316707 HSP90AA2PQ14568 343 aaPredicted RBP6.08□□□□□ -1.44
PTPN13-201ENST00000316707 CIZ1Q9ULV3 898 aaPredicted RBP6.08□□□□□ -1.44
PTPN13-201ENST00000316707 KDM5DQ9BY66 1539 aa6.08□□□□□ -1.44
PTPN13-201ENST00000316707 LAMC3Q9Y6N6 1575 aa6.07□□□□□ -1.44
PTPN13-201ENST00000316707 MCM4P33991 863 aa6.07□□□□□ -1.44
PTPN13-201ENST00000316707 PRDM2Q13029 1718 aa6.07□□□□□ -1.44
PTPN13-201ENST00000316707 PRG4Q92954 1404 aaPredicted RBP6.07□□□□□ -1.44
PTPN13-201ENST00000316707 ANP32BQ92688 251 aaKnown RBP6.07□□□□□ -1.44
PTPN13-201ENST00000316707 NAP1L5Q96NT1 182 aaPredicted RBP6.07□□□□□ -1.44
PTPN13-201ENST00000316707 SCAPERQ9BY12 1400 aa6.07□□□□□ -1.44
PTPN13-201ENST00000316707 NKTRP30414 1462 aaKnown RBP6.07□□□□□ -1.44
PTPN13-201ENST00000316707 FSD2A1L4K1 749 aa6.07□□□□□ -1.44
PTPN13-201ENST00000316707 TRIM44Q96DX7 344 aaPredicted RBP6.07□□□□□ -1.44
PTPN13-201ENST00000316707 SLKQ9H2G2 1235 aaPredicted RBP6.07□□□□□ -1.44
PTPN13-201ENST00000316707 TBC1D32Q96NH3 1257 aa6.06□□□□□ -1.44
PTPN13-201ENST00000316707 CT47B1P0C2W7 299 aaPredicted RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms