RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ARHGEF5Q12774 1597 aa29.67■■■□□ 2.34
SHMT1-201ENST00000316694 CHD1O14646 1710 aa29.65■■■□□ 2.34
SHMT1-201ENST00000316694 RNF123Q5XPI4 1314 aa29.64■■■□□ 2.34
SHMT1-201ENST00000316694 CCDC136Q96JN2 1154 aa29.63■■■□□ 2.33
SHMT1-201ENST00000316694 CCDC141Q6ZP82 1450 aa29.63■■■□□ 2.33
SHMT1-201ENST00000316694 MYBBP1AQ9BQG0 1328 aaKnown RBP29.62■■■□□ 2.33
SHMT1-201ENST00000316694 PREX2Q70Z35 1606 aa29.62■■■□□ 2.33
SHMT1-201ENST00000316694 FAM135AQ9P2D6 1515 aa29.6■■■□□ 2.33
SHMT1-201ENST00000316694 RALBP1Q15311 655 aa29.59■■■□□ 2.33
SHMT1-201ENST00000316694 BRD4O60885 1362 aaPredicted RBP29.58■■■□□ 2.33
SHMT1-201ENST00000316694 LRPPRCP42704 1394 aaKnown RBP29.57■■■□□ 2.32
SHMT1-201ENST00000316694 RGL3Q3MIN7 710 aa29.56■■■□□ 2.32
SHMT1-201ENST00000316694 SYCP2Q9BX26 1530 aa29.55■■■□□ 2.32
SHMT1-201ENST00000316694 CCDC144AA2RUR9 1427 aa29.55■■■□□ 2.32
SHMT1-201ENST00000316694 KTN1Q86UP2 1357 aaKnown RBP29.55■■■□□ 2.32
SHMT1-201ENST00000316694 TTC37Q6PGP7 1564 aa29.55■■■□□ 2.32
SHMT1-201ENST00000316694 E9PCH4 1651 aa29.54■■■□□ 2.32
SHMT1-201ENST00000316694 RSPH4AQ5TD94 716 aa29.54■■■□□ 2.32
SHMT1-201ENST00000316694 ERCC6L2Q5T890 1561 aa29.53■■■□□ 2.32
SHMT1-201ENST00000316694 ARHGAP5Q13017 1502 aa29.52■■■□□ 2.32
SHMT1-201ENST00000316694 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.52■■■□□ 2.32
SHMT1-201ENST00000316694 PRAG1Q86YV5 1406 aa29.51■■■□□ 2.31
SHMT1-201ENST00000316694 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.51■■■□□ 2.31
SHMT1-201ENST00000316694 NBPF1Q3BBV0 1214 aa29.49■■■□□ 2.31
SHMT1-201ENST00000316694 TRPM1Q7Z4N2 1603 aa29.49■■■□□ 2.31
SHMT1-201ENST00000316694 SALL2Q9Y467 1007 aaPredicted RBP29.49■■■□□ 2.31
SHMT1-201ENST00000316694 SHROOM2Q13796 1616 aa29.48■■■□□ 2.31
SHMT1-201ENST00000316694 NLRP13Q86W25 1043 aa29.45■■■□□ 2.31
SHMT1-201ENST00000316694 BCL11AQ9H165 835 aa29.45■■■□□ 2.3
SHMT1-201ENST00000316694 PARD3Q8TEW0 1356 aa29.42■■■□□ 2.3
SHMT1-201ENST00000316694 PLA2R1Q13018 1463 aa29.41■■■□□ 2.3
SHMT1-201ENST00000316694 ABCC2Q92887 1545 aa29.41■■■□□ 2.3
SHMT1-201ENST00000316694 A2MP01023 1474 aa29.4■■■□□ 2.3
SHMT1-201ENST00000316694 RRP1P56182 461 aaKnown RBP29.39■■■□□ 2.3
SHMT1-201ENST00000316694 PLEKHH2Q8IVE3 1493 aa29.39■■■□□ 2.3
SHMT1-201ENST00000316694 NOP58Q9Y2X3 529 aaKnown RBP29.38■■■□□ 2.29
SHMT1-201ENST00000316694 MAST1Q9Y2H9 1570 aa29.38■■■□□ 2.29
SHMT1-201ENST00000316694 MYO5CQ9NQX4 1742 aa29.38■■■□□ 2.29
SHMT1-201ENST00000316694 UNC13BO14795 1591 aa29.38■■■□□ 2.29
SHMT1-201ENST00000316694 PER1O15534 1290 aaPredicted RBP29.37■■■□□ 2.29
SHMT1-201ENST00000316694 RCAN3Q9UKA8 241 aa29.37■■■□□ 2.29
SHMT1-201ENST00000316694 CC2D1BQ5T0F9 858 aaKnown RBP29.36■■■□□ 2.29
SHMT1-201ENST00000316694 GPRASP1Q5JY77 1395 aa29.35■■■□□ 2.29
SHMT1-201ENST00000316694 DISP3Q9P2K9 1392 aa29.34■■■□□ 2.29
SHMT1-201ENST00000316694 EXOC6Q8TAG9 804 aa29.33■■■□□ 2.29
SHMT1-201ENST00000316694 COL17A1Q9UMD9 1497 aaPredicted RBP29.33■■■□□ 2.29
SHMT1-201ENST00000316694 TESK2Q96S53 571 aa29.32■■■□□ 2.28
SHMT1-201ENST00000316694 PAK3O75914 559 aaPredicted RBP29.31■■■□□ 2.28
SHMT1-201ENST00000316694 ANP32AP39687 249 aaKnown RBP29.31■■■□□ 2.28
SHMT1-201ENST00000316694 PRDM15P57071 1507 aaPredicted RBP29.3■■■□□ 2.28
SHMT1-201ENST00000316694 PLXNC1O60486 1568 aa29.3■■■□□ 2.28
SHMT1-201ENST00000316694 IQGAP3Q86VI3 1631 aa29.29■■■□□ 2.28
SHMT1-201ENST00000316694 PANK3Q9H999 370 aa29.29■■■□□ 2.28
SHMT1-201ENST00000316694 PDE3BQ13370 1112 aa29.29■■■□□ 2.28
SHMT1-201ENST00000316694 ERBINQ96RT1 1412 aa29.28■■■□□ 2.28
SHMT1-201ENST00000316694 CDCA7LQ96GN5 454 aa29.28■■■□□ 2.28
SHMT1-201ENST00000316694 LAMC1P11047 1609 aa29.26■■■□□ 2.28
SHMT1-201ENST00000316694 PLCH2O75038 1416 aa29.26■■■□□ 2.27
SHMT1-201ENST00000316694 DUOX2Q9NRD8 1548 aa29.25■■■□□ 2.27
SHMT1-201ENST00000316694 ZCCHC11Q5TAX3 1644 aaKnown RBP29.25■■■□□ 2.27
SHMT1-201ENST00000316694 TMF1P82094 1093 aa29.25■■■□□ 2.27
SHMT1-201ENST00000316694 EIF2AK4Q9P2K8 1649 aaKnown RBP29.24■■■□□ 2.27
SHMT1-201ENST00000316694 WASHC2CQ9Y4E1 1318 aa29.24■■■□□ 2.27
SHMT1-201ENST00000316694 EFCAB2Q5VUJ9 269 aa29.24■■■□□ 2.27
SHMT1-201ENST00000316694 IPO9Q96P70 1041 aaKnown RBP29.23■■■□□ 2.27
SHMT1-201ENST00000316694 NBR1Q14596 966 aa29.21■■■□□ 2.27
SHMT1-201ENST00000316694 TRAPPC8Q9Y2L5 1435 aa29.2■■■□□ 2.27
SHMT1-201ENST00000316694 MYT1LQ9UL68 1186 aa29.2■■■□□ 2.27
SHMT1-201ENST00000316694 ATP10AO60312 1499 aa29.16■■■□□ 2.26
SHMT1-201ENST00000316694 MAGI2Q86UL8 1455 aa29.16■■■□□ 2.26
SHMT1-201ENST00000316694 BLMP54132 1417 aaPredicted RBP29.16■■■□□ 2.26
SHMT1-201ENST00000316694 PLIN1O60240 522 aa29.15■■■□□ 2.26
SHMT1-201ENST00000316694 ZBTB47Q9UFB7 747 aaPredicted RBP29.15■■■□□ 2.26
SHMT1-201ENST00000316694 ABCC1P33527 1531 aa29.15■■■□□ 2.26
SHMT1-201ENST00000316694 AFAP1Q8N556 730 aa29.14■■■□□ 2.26
SHMT1-201ENST00000316694 CLASP1Q7Z460 1538 aa29.14■■■□□ 2.26
SHMT1-201ENST00000316694 TCERG1O14776 1098 aaKnown RBP29.12■■■□□ 2.25
SHMT1-201ENST00000316694 UHRF1BP1LA0JNW5 1464 aa29.11■■■□□ 2.25
SHMT1-201ENST00000316694 NPM2Q86SE8 214 aaKnown RBP29.11■■■□□ 2.25
SHMT1-201ENST00000316694 DEKP35659 375 aaKnown RBP29.1■■■□□ 2.25
SHMT1-201ENST00000316694 RNF17Q9BXT8 1623 aaKnown RBP29.09■■■□□ 2.25
SHMT1-201ENST00000316694 SPAG9O60271 1321 aaKnown RBP29.09■■■□□ 2.25
SHMT1-201ENST00000316694 INSRP06213 1382 aa29.09■■■□□ 2.25
SHMT1-201ENST00000316694 ZMYM4Q5VZL5 1548 aa29.07■■■□□ 2.24
SHMT1-201ENST00000316694 ADAMTS8Q9UP79 889 aa29.06■■■□□ 2.24
SHMT1-201ENST00000316694 KNSTRNQ9Y448 316 aa29.06■■■□□ 2.24
SHMT1-201ENST00000316694 PDE4AP27815 886 aa29.04■■■□□ 2.24
SHMT1-201ENST00000316694 CRBNQ96SW2 442 aa29.04■■■□□ 2.24
SHMT1-201ENST00000316694 WDR7Q9Y4E6 1490 aa29.03■■■□□ 2.24
SHMT1-201ENST00000316694 MADDQ8WXG6 1647 aa29.01■■■□□ 2.24
SHMT1-201ENST00000316694 PPP2R1AP30153 589 aa29■■■□□ 2.23
SHMT1-201ENST00000316694 WDR43Q15061 677 aaKnown RBP eCLIP29■■■□□ 2.23
SHMT1-201ENST00000316694 BACH2Q9BYV9 841 aa28.98■■■□□ 2.23
SHMT1-201ENST00000316694 IQGAP1P46940 1657 aa28.97■■■□□ 2.23
SHMT1-201ENST00000316694 ZFYVE16Q7Z3T8 1539 aa28.97■■■□□ 2.23
SHMT1-201ENST00000316694 MS4A1P11836 297 aa28.97■■■□□ 2.23
SHMT1-201ENST00000316694 RTEL1-TNFRSF6BF6WH68 1400 aa28.96■■■□□ 2.23
SHMT1-201ENST00000316694 AMER1Q5JTC6 1135 aaPredicted RBP28.95■■■□□ 2.22
SHMT1-201ENST00000316694 SKAP1Q86WV1 359 aa28.95■■■□□ 2.22
SHMT1-201ENST00000316694 C20orf194Q5TEA3 1177 aa28.94■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms