RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 MRC2Q9UBG0 1479 aa17.12■□□□□ 0.33
RFFL-201ENST00000315249 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.12■□□□□ 0.33
RFFL-201ENST00000315249 PRG4Q92954 1404 aaPredicted RBP17.12■□□□□ 0.33
RFFL-201ENST00000315249 ST20-MTHFSA0A0A6YYL1 179 aa17.11■□□□□ 0.33
RFFL-201ENST00000315249 KIAA1211Q6ZU35 1233 aa17.11■□□□□ 0.33
RFFL-201ENST00000315249 SMC4Q9NTJ3 1288 aa17.11■□□□□ 0.33
RFFL-201ENST00000315249 MCCP23508 829 aa17.1■□□□□ 0.33
RFFL-201ENST00000315249 AFAP1Q8N556 730 aa17.1■□□□□ 0.33
RFFL-201ENST00000315249 NUTM2GQ5VZR2 741 aa17.09■□□□□ 0.33
RFFL-201ENST00000315249 RRP7AQ9Y3A4 280 aaKnown RBP17.09■□□□□ 0.33
RFFL-201ENST00000315249 PLCB2Q00722 1185 aa17.08■□□□□ 0.33
RFFL-201ENST00000315249 GNL2Q13823 731 aaKnown RBP17.08■□□□□ 0.33
RFFL-201ENST00000315249 PANK3Q9H999 370 aa17.08■□□□□ 0.32
RFFL-201ENST00000315249 LMOD3Q0VAK6 560 aa17.08■□□□□ 0.32
RFFL-201ENST00000315249 TEFQ10587 303 aa17.07■□□□□ 0.32
RFFL-201ENST00000315249 PPP4R2Q9NY27 417 aa17.06■□□□□ 0.32
RFFL-201ENST00000315249 TTC5Q8N0Z6 440 aa17.05■□□□□ 0.32
RFFL-201ENST00000315249 ELL2O00472 640 aaPredicted RBP17.05■□□□□ 0.32
RFFL-201ENST00000315249 PTMAP06454 111 aaKnown RBP17.05■□□□□ 0.32
RFFL-201ENST00000315249 CGNL1Q0VF96 1302 aa17.05■□□□□ 0.32
RFFL-201ENST00000315249 USP35Q9P2H5 1018 aa17.05■□□□□ 0.32
RFFL-201ENST00000315249 TXNDC2Q86VQ3 553 aa17.04■□□□□ 0.32
RFFL-201ENST00000315249 KIF15Q9NS87 1388 aa17.04■□□□□ 0.32
RFFL-201ENST00000315249 CLUAP1Q96AJ1 413 aa17.04■□□□□ 0.32
RFFL-201ENST00000315249 GOLGA6L4A6NEF3 574 aa17.04■□□□□ 0.32
RFFL-201ENST00000315249 TRIM6-TRIM34B2RNG4 842 aa17.03■□□□□ 0.32
RFFL-201ENST00000315249 GPATCH3Q96I76 525 aa17.03■□□□□ 0.32
RFFL-201ENST00000315249 PIP4K2BP78356 416 aa17.03■□□□□ 0.32
RFFL-201ENST00000315249 SPRYD3Q8NCJ5 442 aa17.03■□□□□ 0.32
RFFL-201ENST00000315249 TRIM44Q96DX7 344 aaPredicted RBP17.03■□□□□ 0.32
RFFL-201ENST00000315249 EIF2S2P20042 333 aaKnown RBP17.02■□□□□ 0.31
RFFL-201ENST00000315249 PROSER2Q86WR7 435 aaPredicted RBP17.02■□□□□ 0.31
RFFL-201ENST00000315249 SYNJ2O15056 1496 aa17.02■□□□□ 0.31
RFFL-201ENST00000315249 NECTIN2Q92692 538 aa17.01■□□□□ 0.31
RFFL-201ENST00000315249 MYOM3Q5VTT5 1437 aa17.01■□□□□ 0.31
RFFL-201ENST00000315249 RCAN3Q9UKA8 241 aa17.01■□□□□ 0.31
RFFL-201ENST00000315249 DNAJC5BQ9UF47 199 aa17■□□□□ 0.31
RFFL-201ENST00000315249 HDAC5Q9UQL6 1122 aa17■□□□□ 0.31
RFFL-201ENST00000315249 NUTM2BA6NNL0 878 aaPredicted RBP17■□□□□ 0.31
RFFL-201ENST00000315249 NUTM2EB1AL46 878 aaPredicted RBP17■□□□□ 0.31
RFFL-201ENST00000315249 TMEM132EQ6IEE7 984 aa17■□□□□ 0.31
RFFL-201ENST00000315249 NUTM2AQ8IVF1 878 aaPredicted RBP17■□□□□ 0.31
RFFL-201ENST00000315249 IFT140Q96RY7 1462 aa16.99■□□□□ 0.31
RFFL-201ENST00000315249 ESCO1Q5FWF5 840 aa16.99■□□□□ 0.31
RFFL-201ENST00000315249 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
RFFL-201ENST00000315249 AMER1Q5JTC6 1135 aaPredicted RBP16.98■□□□□ 0.31
RFFL-201ENST00000315249 RAPGEF3O95398 923 aa16.98■□□□□ 0.31
RFFL-201ENST00000315249 HSCBQ8IWL3 235 aa16.98■□□□□ 0.31
RFFL-201ENST00000315249 CCER2I3L3R5 266 aa16.98■□□□□ 0.31
RFFL-201ENST00000315249 TOMM22Q9NS69 142 aa16.97■□□□□ 0.31
RFFL-201ENST00000315249 DHX57Q6P158 1386 aaKnown RBP16.97■□□□□ 0.31
RFFL-201ENST00000315249 NLRP13Q86W25 1043 aa16.96■□□□□ 0.31
RFFL-201ENST00000315249 NLRP2Q9NX02 1062 aa16.96■□□□□ 0.31
RFFL-201ENST00000315249 HMMRO75330 724 aa16.96■□□□□ 0.31
RFFL-201ENST00000315249 ANP32EQ9BTT0 268 aa16.96■□□□□ 0.31
RFFL-201ENST00000315249 RAPGEF4Q8WZA2 1011 aa16.96■□□□□ 0.3
RFFL-201ENST00000315249 FBXW7Q969H0 707 aa16.95■□□□□ 0.3
RFFL-201ENST00000315249 RWDD1Q9H446 243 aaPredicted RBP16.95■□□□□ 0.3
RFFL-201ENST00000315249 STRN4Q9NRL3 753 aa16.94■□□□□ 0.3
RFFL-201ENST00000315249 CABP2Q9NPB3 220 aa16.94■□□□□ 0.3
RFFL-201ENST00000315249 ABTB2Q8N961 1025 aa16.93■□□□□ 0.3
RFFL-201ENST00000315249 PMFBP1Q8TBY8 1022 aa16.93■□□□□ 0.3
RFFL-201ENST00000315249 THEMISQ8N1K5 641 aaPredicted RBP16.93■□□□□ 0.3
RFFL-201ENST00000315249 NLRP6P59044 892 aa16.93■□□□□ 0.3
RFFL-201ENST00000315249 DCAF8L1A6NGE4 600 aa16.92■□□□□ 0.3
RFFL-201ENST00000315249 CFAP44Q96MT7 982 aa16.92■□□□□ 0.3
RFFL-201ENST00000315249 CUX1P39880 1505 aa16.92■□□□□ 0.3
RFFL-201ENST00000315249 TOPBP1Q92547 1522 aa16.92■□□□□ 0.3
RFFL-201ENST00000315249 BCL2L13Q9BXK5 485 aa16.92■□□□□ 0.3
RFFL-201ENST00000315249 CENPJQ9HC77 1338 aaPredicted RBP16.92■□□□□ 0.3
RFFL-201ENST00000315249 DNTTIP2Q5QJE6 756 aaKnown RBP16.91■□□□□ 0.3
RFFL-201ENST00000315249 USP47Q96K76 1375 aa16.91■□□□□ 0.3
RFFL-201ENST00000315249 HSP90B1P14625 803 aaKnown RBP16.91■□□□□ 0.3
RFFL-201ENST00000315249 CFTRP13569 1480 aa16.91■□□□□ 0.3
RFFL-201ENST00000315249 NEXNQ0ZGT2 675 aa16.91■□□□□ 0.3
RFFL-201ENST00000315249 PPP1R1BQ9UD71 204 aaPredicted RBP16.91■□□□□ 0.3
RFFL-201ENST00000315249 DIAPH1O60610 1272 aaKnown RBP16.9■□□□□ 0.3
RFFL-201ENST00000315249 SCAPERQ9BY12 1400 aa16.9■□□□□ 0.3
RFFL-201ENST00000315249 SF3B2Q13435 895 aaKnown RBP16.89■□□□□ 0.3
RFFL-201ENST00000315249 HMOX1P09601 288 aa16.89■□□□□ 0.29
RFFL-201ENST00000315249 VPS53Q5VIR6 699 aa16.89■□□□□ 0.29
RFFL-201ENST00000315249 C9orf78Q9NZ63 289 aaPredicted RBP16.89■□□□□ 0.29
RFFL-201ENST00000315249 GPRASP1Q5JY77 1395 aa16.89■□□□□ 0.29
RFFL-201ENST00000315249 RAD21O60216 631 aa16.88■□□□□ 0.29
RFFL-201ENST00000315249 VPS37DQ86XT2 251 aa16.88■□□□□ 0.29
RFFL-201ENST00000315249 ANKRD50Q9ULJ7 1429 aa16.87■□□□□ 0.29
RFFL-201ENST00000315249 TCERG1O14776 1098 aaKnown RBP16.87■□□□□ 0.29
RFFL-201ENST00000315249 ANKLE2Q86XL3 938 aa16.87■□□□□ 0.29
RFFL-201ENST00000315249 FGD6Q6ZV73 1430 aa16.86■□□□□ 0.29
RFFL-201ENST00000315249 SLC26A8Q96RN1 970 aa16.86■□□□□ 0.29
RFFL-201ENST00000315249 TRIM34Q9BYJ4 488 aa16.86■□□□□ 0.29
RFFL-201ENST00000315249 GGNBP2Q9H3C7 697 aa16.86■□□□□ 0.29
RFFL-201ENST00000315249 GOLGA6L6A8MZA4 724 aa16.85■□□□□ 0.29
RFFL-201ENST00000315249 MYBBP1AQ9BQG0 1328 aaKnown RBP16.85■□□□□ 0.29
RFFL-201ENST00000315249 POLA1P09884 1462 aaPredicted RBP16.85■□□□□ 0.29
RFFL-201ENST00000315249 KAT6BQ8WYB5 2073 aa16.84■□□□□ 0.29
RFFL-201ENST00000315249 NOL10Q9BSC4 688 aaKnown RBP16.84■□□□□ 0.29
RFFL-201ENST00000315249 RIPK4P57078 832 aa16.83■□□□□ 0.29
RFFL-201ENST00000315249 NOL8Q76FK4 1167 aaKnown RBP16.83■□□□□ 0.29
RFFL-201ENST00000315249 SYNJ1O43426 1573 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms