RNA–Protein interactions for RNA: ENST00000312481.11

COL6A5-202, Transcript of collagen type VI alpha 5 chain, humanhuman

TSL 1 (best)

Gene COL6A5, Length 9,226 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5-202ENST00000312481 GPATCH3Q96I76 525 aa11.07□□□□□ -0.64
COL6A5-202ENST00000312481 CHIC2Q9UKJ5 165 aa11.07□□□□□ -0.64
COL6A5-202ENST00000312481 ABCA10Q8WWZ4 1543 aa11.07□□□□□ -0.64
COL6A5-202ENST00000312481 TERF2IPQ9NYB0 399 aa11.06□□□□□ -0.64
COL6A5-202ENST00000312481 NUP155O75694 1391 aa11.06□□□□□ -0.64
COL6A5-202ENST00000312481 EFCAB2Q5VUJ9 269 aa11.06□□□□□ -0.64
COL6A5-202ENST00000312481 E9PSI1 815 aa11.05□□□□□ -0.64
COL6A5-202ENST00000312481 POLA1P09884 1462 aaPredicted RBP11.05□□□□□ -0.64
COL6A5-202ENST00000312481 USP47Q96K76 1375 aa11.05□□□□□ -0.64
COL6A5-202ENST00000312481 SYNJ2O15056 1496 aa11.04□□□□□ -0.64
COL6A5-202ENST00000312481 TPM4P67936 248 aa11.04□□□□□ -0.64
COL6A5-202ENST00000312481 GOLGA2Q08379 1002 aa11.04□□□□□ -0.64
COL6A5-202ENST00000312481 NCOA2Q15596 1464 aa11.04□□□□□ -0.64
COL6A5-202ENST00000312481 LRRFIP1Q32MZ4 808 aaKnown RBP11.04□□□□□ -0.64
COL6A5-202ENST00000312481 ZNF428Q96B54 188 aa11.03□□□□□ -0.64
COL6A5-202ENST00000312481 ST18O60284 1047 aa11.03□□□□□ -0.64
COL6A5-202ENST00000312481 FAM161AQ3B820 660 aa11.02□□□□□ -0.64
COL6A5-202ENST00000312481 DNTTIP2Q5QJE6 756 aaKnown RBP11.02□□□□□ -0.65
COL6A5-202ENST00000312481 IFT140Q96RY7 1462 aa11.02□□□□□ -0.65
COL6A5-202ENST00000312481 DHX29Q7Z478 1369 aaKnown RBP11.02□□□□□ -0.65
COL6A5-202ENST00000312481 HDGFL2Q7Z4V5 671 aaPredicted RBP11.02□□□□□ -0.65
COL6A5-202ENST00000312481 SPAG9O60271 1321 aaKnown RBP11.02□□□□□ -0.65
COL6A5-202ENST00000312481 LAS1LQ9Y4W2 734 aaKnown RBP11.01□□□□□ -0.65
COL6A5-202ENST00000312481 GOLGA6L4A6NEF3 574 aa11.01□□□□□ -0.65
COL6A5-202ENST00000312481 SNAPC4Q5SXM2 1469 aa11.01□□□□□ -0.65
COL6A5-202ENST00000312481 TPM3P06753 285 aa11.01□□□□□ -0.65
COL6A5-202ENST00000312481 ARAP1Q96P48 1450 aa11□□□□□ -0.65
COL6A5-202ENST00000312481 HSPA5P11021 654 aaKnown RBP11□□□□□ -0.65
COL6A5-202ENST00000312481 KIAA1211Q6ZU35 1233 aa11□□□□□ -0.65
COL6A5-202ENST00000312481 DEKP35659 375 aaKnown RBP11□□□□□ -0.65
COL6A5-202ENST00000312481 ARHGEF12Q9NZN5 1544 aa11□□□□□ -0.65
COL6A5-202ENST00000312481 GOLGA6L3A6NEY3 463 aa11□□□□□ -0.65
COL6A5-202ENST00000312481 CACNA1FO60840 1977 aa11□□□□□ -0.65
COL6A5-202ENST00000312481 PCF11O94913 1555 aaKnown RBP11□□□□□ -0.65
COL6A5-202ENST00000312481 KDM2AQ9Y2K7 1162 aa11□□□□□ -0.65
COL6A5-202ENST00000312481 GOLGA6L1Q8N7Z2 621 aa10.99□□□□□ -0.65
COL6A5-202ENST00000312481 INSRP06213 1382 aa10.99□□□□□ -0.65
COL6A5-202ENST00000312481 FHOD3Q2V2M9 1422 aa10.98□□□□□ -0.65
COL6A5-202ENST00000312481 REC8O95072 547 aa10.98□□□□□ -0.65
COL6A5-202ENST00000312481 DCAF11Q8TEB1 546 aa10.98□□□□□ -0.65
COL6A5-202ENST00000312481 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.98□□□□□ -0.65
COL6A5-202ENST00000312481 PRKRIP1Q9H875 184 aaPredicted RBP10.98□□□□□ -0.65
COL6A5-202ENST00000312481 CENPJQ9HC77 1338 aaPredicted RBP10.98□□□□□ -0.65
COL6A5-202ENST00000312481 MAGI1Q96QZ7 1491 aaPredicted RBP10.98□□□□□ -0.65
COL6A5-202ENST00000312481 MCM2P49736 904 aa10.98□□□□□ -0.65
COL6A5-202ENST00000312481 BCL11AQ9H165 835 aa10.97□□□□□ -0.65
COL6A5-202ENST00000312481 SMG6Q86US8 1419 aaKnown RBP10.97□□□□□ -0.65
COL6A5-202ENST00000312481 MORC1Q86VD1 984 aa10.97□□□□□ -0.65
COL6A5-202ENST00000312481 NAP1L5Q96NT1 182 aaPredicted RBP10.97□□□□□ -0.65
COL6A5-202ENST00000312481 IGF1RP08069 1367 aa10.96□□□□□ -0.66
COL6A5-202ENST00000312481 PKD2Q13563 968 aa10.96□□□□□ -0.66
COL6A5-202ENST00000312481 KIF1BO60333 1816 aa10.96□□□□□ -0.66
COL6A5-202ENST00000312481 TOPBP1Q92547 1522 aa10.95□□□□□ -0.66
COL6A5-202ENST00000312481 PBRM1Q86U86 1689 aa10.95□□□□□ -0.66
COL6A5-202ENST00000312481 KIAA1107Q9UPP5 1409 aa10.95□□□□□ -0.66
COL6A5-202ENST00000312481 MRC2Q9UBG0 1479 aa10.95□□□□□ -0.66
COL6A5-202ENST00000312481 CAVIN1Q6NZI2 390 aaKnown RBP10.95□□□□□ -0.66
COL6A5-202ENST00000312481 DDX19BQ9UMR2 479 aa10.95□□□□□ -0.66
COL6A5-202ENST00000312481 CHGAP10645 457 aaKnown RBP10.94□□□□□ -0.66
COL6A5-202ENST00000312481 POGKQ9P215 609 aa10.94□□□□□ -0.66
COL6A5-202ENST00000312481 KIF7Q2M1P5 1343 aa10.94□□□□□ -0.66
COL6A5-202ENST00000312481 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.94□□□□□ -0.66
COL6A5-202ENST00000312481 LETM1O95202 739 aaPredicted RBP10.94□□□□□ -0.66
COL6A5-202ENST00000312481 GSE1Q14687 1217 aa10.94□□□□□ -0.66
COL6A5-202ENST00000312481 ANKRD50Q9ULJ7 1429 aa10.94□□□□□ -0.66
COL6A5-202ENST00000312481 BICRAQ9NZM4 1560 aa10.93□□□□□ -0.66
COL6A5-202ENST00000312481 NUCB2P80303 420 aa10.93□□□□□ -0.66
COL6A5-202ENST00000312481 TEX14Q8IWB6 1497 aa10.93□□□□□ -0.66
COL6A5-202ENST00000312481 TSHZ2Q9NRE2 1034 aa10.93□□□□□ -0.66
COL6A5-202ENST00000312481 ANKRD30BQ9BXX2 1392 aa10.93□□□□□ -0.66
COL6A5-202ENST00000312481 TROQ12816 1431 aaPredicted RBP10.93□□□□□ -0.66
COL6A5-202ENST00000312481 EVC2Q86UK5 1308 aa10.92□□□□□ -0.66
COL6A5-202ENST00000312481 RRP1P56182 461 aaKnown RBP10.92□□□□□ -0.66
COL6A5-202ENST00000312481 GPS2Q13227 327 aa10.92□□□□□ -0.66
COL6A5-202ENST00000312481 NUP160Q12769 1436 aa10.92□□□□□ -0.66
COL6A5-202ENST00000312481 ZMYM4Q5VZL5 1548 aa10.92□□□□□ -0.66
COL6A5-202ENST00000312481 HMGN5P82970 282 aaKnown RBP10.91□□□□□ -0.66
COL6A5-202ENST00000312481 PDE3AQ14432 1141 aa10.9□□□□□ -0.66
COL6A5-202ENST00000312481 RTF1Q92541 710 aaKnown RBP10.9□□□□□ -0.66
COL6A5-202ENST00000312481 CIZ1Q9ULV3 898 aaPredicted RBP10.9□□□□□ -0.66
COL6A5-202ENST00000312481 SHANK2Q9UPX8 1470 aa10.9□□□□□ -0.66
COL6A5-202ENST00000312481 TAF3Q5VWG9 929 aa10.9□□□□□ -0.66
COL6A5-202ENST00000312481 CFAP74Q9C0B2 1584 aa10.9□□□□□ -0.66
COL6A5-202ENST00000312481 RAPGEF6Q8TEU7 1601 aa10.9□□□□□ -0.66
COL6A5-202ENST00000312481 KIAA0586Q9BVV6 1533 aa10.9□□□□□ -0.67
COL6A5-202ENST00000312481 L3MBTL2Q969R5 705 aa10.89□□□□□ -0.67
COL6A5-202ENST00000312481 VGFO15240 615 aaPredicted RBP10.89□□□□□ -0.67
COL6A5-202ENST00000312481 CAMSAP2Q08AD1 1489 aa10.89□□□□□ -0.67
COL6A5-202ENST00000312481 FAM135AQ9P2D6 1515 aa10.89□□□□□ -0.67
COL6A5-202ENST00000312481 B4GALNT3Q6L9W6 998 aa10.89□□□□□ -0.67
COL6A5-202ENST00000312481 EPRSP07814 1512 aaKnown RBP10.89□□□□□ -0.67
COL6A5-202ENST00000312481 SIN3AQ96ST3 1273 aa10.88□□□□□ -0.67
COL6A5-202ENST00000312481 MBD3O95983 291 aa10.88□□□□□ -0.67
COL6A5-202ENST00000312481 KANK4Q5T7N3 995 aaPredicted RBP10.88□□□□□ -0.67
COL6A5-202ENST00000312481 HOOK1Q9UJC3 728 aaKnown RBP10.88□□□□□ -0.67
COL6A5-202ENST00000312481 KCNJ4P48050 445 aa10.88□□□□□ -0.67
COL6A5-202ENST00000312481 RUFY2Q8WXA3 655 aa10.88□□□□□ -0.67
COL6A5-202ENST00000312481 A0A0U1RQG5 324 aaPredicted RBP10.88□□□□□ -0.67
COL6A5-202ENST00000312481 CCP110O43303 1012 aa10.88□□□□□ -0.67
COL6A5-202ENST00000312481 HMGB2P26583 209 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms