RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 HAP1P54257 671 aaPredicted RBP13.75□□□□□ -0.21
HDGFL3-201ENST00000299633 BCCIPQ9P287 314 aaKnown RBP eCLIP13.75□□□□□ -0.21
HDGFL3-201ENST00000299633 CDCA8Q53HL2 280 aa13.75□□□□□ -0.21
HDGFL3-201ENST00000299633 KIF3AQ9Y496 699 aa13.75□□□□□ -0.21
HDGFL3-201ENST00000299633 ARHGAP35Q9NRY4 1499 aa13.74□□□□□ -0.21
HDGFL3-201ENST00000299633 IPO7O95373 1038 aaKnown RBP13.74□□□□□ -0.21
HDGFL3-201ENST00000299633 TSPYL1Q9H0U9 437 aa13.74□□□□□ -0.21
HDGFL3-201ENST00000299633 CFDP1Q9UEE9 299 aaPredicted RBP13.74□□□□□ -0.21
HDGFL3-201ENST00000299633 HOMER1Q86YM7 354 aa13.74□□□□□ -0.21
HDGFL3-201ENST00000299633 FAM43AQ8N2R8 423 aa13.74□□□□□ -0.21
HDGFL3-201ENST00000299633 USP8P40818 1118 aa13.72□□□□□ -0.21
HDGFL3-201ENST00000299633 MAPK8IP2Q13387 824 aaPredicted RBP13.72□□□□□ -0.21
HDGFL3-201ENST00000299633 MYO6Q9UM54 1294 aa13.72□□□□□ -0.21
HDGFL3-201ENST00000299633 GOLGA6L7A0A1B0GV03 622 aa13.71□□□□□ -0.21
HDGFL3-201ENST00000299633 ERCC4Q92889 916 aaPredicted RBP13.71□□□□□ -0.21
HDGFL3-201ENST00000299633 SOGA1O94964 1423 aa13.71□□□□□ -0.21
HDGFL3-201ENST00000299633 MNS1Q8NEH6 495 aa13.71□□□□□ -0.22
HDGFL3-201ENST00000299633 BECN2A8MW95 431 aa13.71□□□□□ -0.22
HDGFL3-201ENST00000299633 TCERG1O14776 1098 aaKnown RBP13.71□□□□□ -0.22
HDGFL3-201ENST00000299633 FANCIQ9NVI1 1328 aa13.71□□□□□ -0.22
HDGFL3-201ENST00000299633 KIAA0754O94854 1291 aa13.7□□□□□ -0.22
HDGFL3-201ENST00000299633 FHAD1B1AJZ9 1412 aa13.7□□□□□ -0.22
HDGFL3-201ENST00000299633 SETD5Q9C0A6 1442 aa13.7□□□□□ -0.22
HDGFL3-201ENST00000299633 SKOR2Q2VWA4 1001 aaPredicted RBP13.69□□□□□ -0.22
HDGFL3-201ENST00000299633 ST18O60284 1047 aa13.69□□□□□ -0.22
HDGFL3-201ENST00000299633 PLEKHD1A6NEE1 506 aa13.69□□□□□ -0.22
HDGFL3-201ENST00000299633 CAGE1Q8TC20 777 aa13.69□□□□□ -0.22
HDGFL3-201ENST00000299633 SF3A1Q15459 793 aaKnown RBP13.68□□□□□ -0.22
HDGFL3-201ENST00000299633 CCAR1Q8IX12 1150 aaKnown RBP13.67□□□□□ -0.22
HDGFL3-201ENST00000299633 FOXD4L5Q5VV16 416 aaPredicted RBP13.67□□□□□ -0.22
HDGFL3-201ENST00000299633 FOXD4L4Q8WXT5 416 aaPredicted RBP13.67□□□□□ -0.22
HDGFL3-201ENST00000299633 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.67□□□□□ -0.22
HDGFL3-201ENST00000299633 ANKRD20A12PQ8NF67 263 aa13.66□□□□□ -0.22
HDGFL3-201ENST00000299633 CCER2I3L3R5 266 aa13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 MFAP1P55081 439 aaKnown RBP13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 PCMTD1Q96MG8 357 aaPredicted RBP13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 NAP1L1P55209 391 aaKnown RBP13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 U2SURPO15042 1029 aaKnown RBP13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 H3BQV1 296 aa13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 IFFO2Q5TF58 517 aa13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 SEPT11Q9NVA2 429 aaKnown RBP13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 DIAPH3Q9NSV4 1193 aa13.65□□□□□ -0.22
HDGFL3-201ENST00000299633 VPS8Q8N3P4 1428 aa13.64□□□□□ -0.23
HDGFL3-201ENST00000299633 RSPH4AQ5TD94 716 aa13.64□□□□□ -0.23
HDGFL3-201ENST00000299633 VPS53Q5VIR6 699 aa13.64□□□□□ -0.23
HDGFL3-201ENST00000299633 BCL11BQ9C0K0 894 aaPredicted RBP13.64□□□□□ -0.23
HDGFL3-201ENST00000299633 NUDCQ9Y266 331 aa13.63□□□□□ -0.23
HDGFL3-201ENST00000299633 RCAN3Q9UKA8 241 aa13.63□□□□□ -0.23
HDGFL3-201ENST00000299633 NF2P35240 595 aa13.63□□□□□ -0.23
HDGFL3-201ENST00000299633 RALBP1Q15311 655 aa13.63□□□□□ -0.23
HDGFL3-201ENST00000299633 DCAF11Q8TEB1 546 aa13.63□□□□□ -0.23
HDGFL3-201ENST00000299633 IFT57Q9NWB7 429 aa13.63□□□□□ -0.23
HDGFL3-201ENST00000299633 GOLGA6L10A6NI86 522 aa13.62□□□□□ -0.23
HDGFL3-201ENST00000299633 ZNF526Q8TF50 670 aaPredicted RBP13.62□□□□□ -0.23
HDGFL3-201ENST00000299633 FOXD1Q16676 465 aa13.62□□□□□ -0.23
HDGFL3-201ENST00000299633 KTN1Q86UP2 1357 aaKnown RBP13.62□□□□□ -0.23
HDGFL3-201ENST00000299633 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.62□□□□□ -0.23
HDGFL3-201ENST00000299633 HSPA5P11021 654 aaKnown RBP13.62□□□□□ -0.23
HDGFL3-201ENST00000299633 HOOK1Q9UJC3 728 aaKnown RBP13.61□□□□□ -0.23
HDGFL3-201ENST00000299633 WWC1Q8IX03 1113 aa13.61□□□□□ -0.23
HDGFL3-201ENST00000299633 ODF2Q5BJF6 829 aa13.61□□□□□ -0.23
HDGFL3-201ENST00000299633 POGKQ9P215 609 aa13.61□□□□□ -0.23
HDGFL3-201ENST00000299633 ATP6V1DQ9Y5K8 247 aa13.6□□□□□ -0.23
HDGFL3-201ENST00000299633 APBB1O00213 710 aa13.6□□□□□ -0.23
HDGFL3-201ENST00000299633 TRIM6-TRIM34B2RNG4 842 aa13.6□□□□□ -0.23
HDGFL3-201ENST00000299633 PRDM2Q13029 1718 aa13.6□□□□□ -0.23
HDGFL3-201ENST00000299633 MYH9P35579 1960 aaKnown RBP13.6□□□□□ -0.23
HDGFL3-201ENST00000299633 CT47B1P0C2W7 299 aaPredicted RBP13.6□□□□□ -0.23
HDGFL3-201ENST00000299633 CUX2O14529 1486 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 CCDC173Q0VFZ6 552 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 CECR2Q9BXF3 1484 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 MARCH6O60337 910 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 RAB3GAP2Q9H2M9 1393 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 RBM10P98175 930 aaKnown RBP13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 ENOX2Q16206 610 aaKnown RBP13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 TMF1P82094 1093 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 CNKSR2Q8WXI2 1034 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 AEBP1Q8IUX7 1158 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 ROCK2O75116 1388 aaKnown RBP13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 IPO8O15397 1037 aaKnown RBP13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 CT47A1Q5JQC4 288 aaPredicted RBP13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 CENPHQ9H3R5 247 aa13.59□□□□□ -0.23
HDGFL3-201ENST00000299633 HSP90AB2PQ58FF8 381 aa13.58□□□□□ -0.24
HDGFL3-201ENST00000299633 CCDC88BA6NC98 1476 aa13.58□□□□□ -0.24
HDGFL3-201ENST00000299633 ERCC6Q03468 1493 aa13.58□□□□□ -0.24
HDGFL3-201ENST00000299633 SEPT7Q16181 437 aaKnown RBP13.58□□□□□ -0.24
HDGFL3-201ENST00000299633 SPATA24Q86W54 205 aa13.58□□□□□ -0.24
HDGFL3-201ENST00000299633 DDX49Q9Y6V7 483 aaKnown RBP13.57□□□□□ -0.24
HDGFL3-201ENST00000299633 AXDND1Q5T1B0 1012 aaPredicted RBP13.57□□□□□ -0.24
HDGFL3-201ENST00000299633 NOL8Q76FK4 1167 aaKnown RBP13.57□□□□□ -0.24
HDGFL3-201ENST00000299633 RRP9O43818 475 aaKnown RBP13.57□□□□□ -0.24
HDGFL3-201ENST00000299633 PDE4AP27815 886 aa13.56□□□□□ -0.24
HDGFL3-201ENST00000299633 CCDC39Q9UFE4 941 aa13.56□□□□□ -0.24
HDGFL3-201ENST00000299633 EPS15P42566 896 aa13.56□□□□□ -0.24
HDGFL3-201ENST00000299633 ANKRD18AQ8IVF6 992 aa13.56□□□□□ -0.24
HDGFL3-201ENST00000299633 CFAP57Q96MR6 1250 aa13.56□□□□□ -0.24
HDGFL3-201ENST00000299633 RWDD1Q9H446 243 aaPredicted RBP13.55□□□□□ -0.24
HDGFL3-201ENST00000299633 HMGN5P82970 282 aaKnown RBP13.55□□□□□ -0.24
HDGFL3-201ENST00000299633 ERLIN2O94905 339 aa13.55□□□□□ -0.24
HDGFL3-201ENST00000299633 RBM25P49756 843 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms