RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 GAPVD1Q14C86 1478 aa17.04■□□□□ 0.32
HPS3-201ENST00000296051 MFAP1P55081 439 aaKnown RBP17.04■□□□□ 0.32
HPS3-201ENST00000296051 NFKBIBQ15653 356 aa17.04■□□□□ 0.32
HPS3-201ENST00000296051 SKAP1Q86WV1 359 aa17.04■□□□□ 0.32
HPS3-201ENST00000296051 NESP48681 1621 aa17.04■□□□□ 0.32
HPS3-201ENST00000296051 RRBP1Q9P2E9 1410 aaKnown RBP17.04■□□□□ 0.32
HPS3-201ENST00000296051 MYBBP1AQ9BQG0 1328 aaKnown RBP17.04■□□□□ 0.32
HPS3-201ENST00000296051 USP47Q96K76 1375 aa17.03■□□□□ 0.32
HPS3-201ENST00000296051 PLCB2Q00722 1185 aa17.03■□□□□ 0.32
HPS3-201ENST00000296051 FOXD4L1Q9NU39 408 aa17.03■□□□□ 0.32
HPS3-201ENST00000296051 AMPHP49418 695 aa17.03■□□□□ 0.32
HPS3-201ENST00000296051 PANK3Q9H999 370 aa17.03■□□□□ 0.32
HPS3-201ENST00000296051 PDE3BQ13370 1112 aa17.02■□□□□ 0.32
HPS3-201ENST00000296051 FAM161AQ3B820 660 aa17.01■□□□□ 0.31
HPS3-201ENST00000296051 TERF2IPQ9NYB0 399 aa17.01■□□□□ 0.31
HPS3-201ENST00000296051 TULP1O00294 542 aaPredicted RBP17.01■□□□□ 0.31
HPS3-201ENST00000296051 RRP7AQ9Y3A4 280 aaKnown RBP17.01■□□□□ 0.31
HPS3-201ENST00000296051 ZNF644Q9H582 1327 aaPredicted RBP17.01■□□□□ 0.31
HPS3-201ENST00000296051 NBPF8Q3BBV2 869 aa17■□□□□ 0.31
HPS3-201ENST00000296051 CNTLNQ9NXG0 1405 aa17■□□□□ 0.31
HPS3-201ENST00000296051 GOLGA6L3A6NEY3 463 aa16.99■□□□□ 0.31
HPS3-201ENST00000296051 KIF15Q9NS87 1388 aa16.98■□□□□ 0.31
HPS3-201ENST00000296051 APBB1O00213 710 aa16.98■□□□□ 0.31
HPS3-201ENST00000296051 C11orf95C9JLR9 678 aaPredicted RBP16.98■□□□□ 0.31
HPS3-201ENST00000296051 VGFO15240 615 aaPredicted RBP16.98■□□□□ 0.31
HPS3-201ENST00000296051 COG6Q9Y2V7 657 aa16.98■□□□□ 0.31
HPS3-201ENST00000296051 LRRC9Q6ZRR7 1453 aa16.97■□□□□ 0.31
HPS3-201ENST00000296051 AFAP1Q8N556 730 aa16.97■□□□□ 0.31
HPS3-201ENST00000296051 SYNJ1O43426 1573 aa16.96■□□□□ 0.31
HPS3-201ENST00000296051 EVA1CP58658 441 aa16.96■□□□□ 0.31
HPS3-201ENST00000296051 FRAT2O75474 233 aaPredicted RBP16.96■□□□□ 0.3
HPS3-201ENST00000296051 CENPQQ7L2Z9 268 aaPredicted RBP16.96■□□□□ 0.3
HPS3-201ENST00000296051 FGD6Q6ZV73 1430 aa16.95■□□□□ 0.3
HPS3-201ENST00000296051 UACAQ9BZF9 1416 aa16.95■□□□□ 0.3
HPS3-201ENST00000296051 MS4A1P11836 297 aa16.95■□□□□ 0.3
HPS3-201ENST00000296051 NCAPD3P42695 1498 aa16.95■□□□□ 0.3
HPS3-201ENST00000296051 MINK1Q8N4C8 1332 aaPredicted RBP16.95■□□□□ 0.3
HPS3-201ENST00000296051 APAF1O14727 1248 aa16.94■□□□□ 0.3
HPS3-201ENST00000296051 PRKCSHP14314 528 aaPredicted RBP16.93■□□□□ 0.3
HPS3-201ENST00000296051 ITPRIPQ8IWB1 547 aa16.93■□□□□ 0.3
HPS3-201ENST00000296051 VSIG10Q8N0Z9 540 aa16.93■□□□□ 0.3
HPS3-201ENST00000296051 MSNP26038 577 aaKnown RBP16.93■□□□□ 0.3
HPS3-201ENST00000296051 MEX3CQ5U5Q3 659 aaKnown RBP16.92■□□□□ 0.3
HPS3-201ENST00000296051 ISY1Q9ULR0 285 aaKnown RBP16.92■□□□□ 0.3
HPS3-201ENST00000296051 FGD1P98174 961 aa16.91■□□□□ 0.3
HPS3-201ENST00000296051 GTF2E1P29083 439 aaPredicted RBP16.91■□□□□ 0.3
HPS3-201ENST00000296051 KCNJ4P48050 445 aa16.91■□□□□ 0.3
HPS3-201ENST00000296051 RWDD1Q9H446 243 aaPredicted RBP16.91■□□□□ 0.3
HPS3-201ENST00000296051 PHF23Q9BUL5 403 aaPredicted RBP16.91■□□□□ 0.3
HPS3-201ENST00000296051 CENPJQ9HC77 1338 aaPredicted RBP16.9■□□□□ 0.3
HPS3-201ENST00000296051 BACH2Q9BYV9 841 aa16.89■□□□□ 0.29
HPS3-201ENST00000296051 TMX4Q9H1E5 349 aaPredicted RBP16.89■□□□□ 0.29
HPS3-201ENST00000296051 NAP1L2Q9ULW6 460 aaPredicted RBP16.89■□□□□ 0.29
HPS3-201ENST00000296051 PSME1Q06323 249 aa16.88■□□□□ 0.29
HPS3-201ENST00000296051 PNISRQ8TF01 805 aaKnown RBP16.88■□□□□ 0.29
HPS3-201ENST00000296051 CASC1Q6TDU7 716 aa16.87■□□□□ 0.29
HPS3-201ENST00000296051 HSP90AA2PQ14568 343 aaPredicted RBP16.87■□□□□ 0.29
HPS3-201ENST00000296051 ATF3P18847 181 aa16.87■□□□□ 0.29
HPS3-201ENST00000296051 RSPH6AQ9H0K4 717 aa16.87■□□□□ 0.29
HPS3-201ENST00000296051 CHMP4BQ9H444 224 aaKnown RBP16.86■□□□□ 0.29
HPS3-201ENST00000296051 SMC4Q9NTJ3 1288 aa16.86■□□□□ 0.29
HPS3-201ENST00000296051 EIF3AQ14152 1382 aaKnown RBP16.86■□□□□ 0.29
HPS3-201ENST00000296051 CHMP3Q9Y3E7 222 aa16.85■□□□□ 0.29
HPS3-201ENST00000296051 CCDC144AA2RUR9 1427 aa16.85■□□□□ 0.29
HPS3-201ENST00000296051 ADAMTS8Q9UP79 889 aa16.85■□□□□ 0.29
HPS3-201ENST00000296051 SYTL4Q96C24 671 aaPredicted RBP16.85■□□□□ 0.29
HPS3-201ENST00000296051 PMFBP1Q8TBY8 1022 aa16.84■□□□□ 0.29
HPS3-201ENST00000296051 GBP4Q96PP9 640 aa16.84■□□□□ 0.29
HPS3-201ENST00000296051 CDK11BP21127 795 aaKnown RBP16.84■□□□□ 0.29
HPS3-201ENST00000296051 PRG4Q92954 1404 aaPredicted RBP16.83■□□□□ 0.29
HPS3-201ENST00000296051 RAPGEF3O95398 923 aa16.83■□□□□ 0.28
HPS3-201ENST00000296051 PANK1Q8TE04 598 aa16.82■□□□□ 0.28
HPS3-201ENST00000296051 FOXD4L5Q5VV16 416 aaPredicted RBP16.82■□□□□ 0.28
HPS3-201ENST00000296051 FOXD4L4Q8WXT5 416 aaPredicted RBP16.82■□□□□ 0.28
HPS3-201ENST00000296051 STK31Q9BXU1 1019 aa16.82■□□□□ 0.28
HPS3-201ENST00000296051 PRXQ9BXM0 1461 aa16.81■□□□□ 0.28
HPS3-201ENST00000296051 MYOM3Q5VTT5 1437 aa16.81■□□□□ 0.28
HPS3-201ENST00000296051 COG3Q96JB2 828 aa16.81■□□□□ 0.28
HPS3-201ENST00000296051 TXNDC2Q86VQ3 553 aa16.8■□□□□ 0.28
HPS3-201ENST00000296051 AMER1Q5JTC6 1135 aaPredicted RBP16.8■□□□□ 0.28
HPS3-201ENST00000296051 G3V3G9 751 aa16.79■□□□□ 0.28
HPS3-201ENST00000296051 DCAF8Q5TAQ9 597 aa16.79■□□□□ 0.28
HPS3-201ENST00000296051 TAF7LQ5H9L4 462 aa16.79■□□□□ 0.28
HPS3-201ENST00000296051 ELL2O00472 640 aaPredicted RBP16.79■□□□□ 0.28
HPS3-201ENST00000296051 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
HPS3-201ENST00000296051 CALD1Q05682 793 aaKnown RBP16.78■□□□□ 0.28
HPS3-201ENST00000296051 NOL8Q76FK4 1167 aaKnown RBP16.78■□□□□ 0.28
HPS3-201ENST00000296051 NUTM2GQ5VZR2 741 aa16.78■□□□□ 0.28
HPS3-201ENST00000296051 SLC4A10Q6U841 1118 aa16.78■□□□□ 0.28
HPS3-201ENST00000296051 PROSER2Q86WR7 435 aaPredicted RBP16.78■□□□□ 0.28
HPS3-201ENST00000296051 CC2D2AQ9P2K1 1620 aa16.77■□□□□ 0.28
HPS3-201ENST00000296051 CFTRP13569 1480 aa16.77■□□□□ 0.28
HPS3-201ENST00000296051 NBPF1Q3BBV0 1214 aa16.77■□□□□ 0.27
HPS3-201ENST00000296051 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.77■□□□□ 0.27
HPS3-201ENST00000296051 GORABQ5T7V8 394 aa16.76■□□□□ 0.27
HPS3-201ENST00000296051 EVC2Q86UK5 1308 aa16.76■□□□□ 0.27
HPS3-201ENST00000296051 FOXD4L6Q3SYB3 417 aaPredicted RBP16.76■□□□□ 0.27
HPS3-201ENST00000296051 TMEM132EQ6IEE7 984 aa16.76■□□□□ 0.27
HPS3-201ENST00000296051 FOXD4L3Q6VB84 417 aaPredicted RBP16.76■□□□□ 0.27
HPS3-201ENST00000296051 KLHL34Q8N239 644 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms