RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.37■■□□□ 1.33
PCDH1-201ENST00000287008 EVA1CP58658 441 aa23.36■■□□□ 1.33
PCDH1-201ENST00000287008 PDE3BQ13370 1112 aa23.34■■□□□ 1.33
PCDH1-201ENST00000287008 CLUAP1Q96AJ1 413 aa23.34■■□□□ 1.33
PCDH1-201ENST00000287008 AEBP2Q6ZN18 517 aaPredicted RBP23.32■■□□□ 1.32
PCDH1-201ENST00000287008 KIF15Q9NS87 1388 aa23.32■■□□□ 1.32
PCDH1-201ENST00000287008 CENPJQ9HC77 1338 aaPredicted RBP23.31■■□□□ 1.32
PCDH1-201ENST00000287008 C1orf141Q5JVX7 400 aa23.31■■□□□ 1.32
PCDH1-201ENST00000287008 TEFQ10587 303 aa23.31■■□□□ 1.32
PCDH1-201ENST00000287008 ZNF644Q9H582 1327 aaPredicted RBP23.31■■□□□ 1.32
PCDH1-201ENST00000287008 GPATCH3Q96I76 525 aa23.31■■□□□ 1.32
PCDH1-201ENST00000287008 ERICH6BQ5W0A0 696 aa23.3■■□□□ 1.32
PCDH1-201ENST00000287008 PMFBP1Q8TBY8 1022 aa23.3■■□□□ 1.32
PCDH1-201ENST00000287008 STAC3Q96MF2 364 aa23.29■■□□□ 1.32
PCDH1-201ENST00000287008 GRIN2BQ13224 1484 aa23.29■■□□□ 1.32
PCDH1-201ENST00000287008 GNL2Q13823 731 aaKnown RBP23.29■■□□□ 1.32
PCDH1-201ENST00000287008 G3V3G9 751 aa23.29■■□□□ 1.32
PCDH1-201ENST00000287008 NRDCO43847 1150 aa23.29■■□□□ 1.32
PCDH1-201ENST00000287008 PSME1Q06323 249 aa23.29■■□□□ 1.32
PCDH1-201ENST00000287008 DCAF8Q5TAQ9 597 aa23.29■■□□□ 1.32
PCDH1-201ENST00000287008 MYBBP1AQ9BQG0 1328 aaKnown RBP23.28■■□□□ 1.32
PCDH1-201ENST00000287008 DNTTIP2Q5QJE6 756 aaKnown RBP23.28■■□□□ 1.32
PCDH1-201ENST00000287008 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.32
PCDH1-201ENST00000287008 RRP7AQ9Y3A4 280 aaKnown RBP23.27■■□□□ 1.32
PCDH1-201ENST00000287008 GOLGA6L6A8MZA4 724 aa23.26■■□□□ 1.31
PCDH1-201ENST00000287008 USP47Q96K76 1375 aa23.25■■□□□ 1.31
PCDH1-201ENST00000287008 NOP58Q9Y2X3 529 aaKnown RBP23.25■■□□□ 1.31
PCDH1-201ENST00000287008 AFAP1Q8N556 730 aa23.25■■□□□ 1.31
PCDH1-201ENST00000287008 FRAT2O75474 233 aaPredicted RBP23.24■■□□□ 1.31
PCDH1-201ENST00000287008 ELL2O00472 640 aaPredicted RBP23.23■■□□□ 1.31
PCDH1-201ENST00000287008 TRIM6-TRIM34B2RNG4 842 aa23.22■■□□□ 1.31
PCDH1-201ENST00000287008 ATF3P18847 181 aa23.21■■□□□ 1.31
PCDH1-201ENST00000287008 FGD6Q6ZV73 1430 aa23.21■■□□□ 1.31
PCDH1-201ENST00000287008 TTC5Q8N0Z6 440 aa23.2■■□□□ 1.3
PCDH1-201ENST00000287008 GLIPR1L2Q4G1C9 344 aa23.19■■□□□ 1.3
PCDH1-201ENST00000287008 SPRYD3Q8NCJ5 442 aa23.19■■□□□ 1.3
PCDH1-201ENST00000287008 ANKRD50Q9ULJ7 1429 aa23.18■■□□□ 1.3
PCDH1-201ENST00000287008 PRG4Q92954 1404 aaPredicted RBP23.17■■□□□ 1.3
PCDH1-201ENST00000287008 DIAPH1O60610 1272 aaKnown RBP23.17■■□□□ 1.3
PCDH1-201ENST00000287008 TCERG1O14776 1098 aaKnown RBP23.16■■□□□ 1.3
PCDH1-201ENST00000287008 CLSTN1O94985 981 aa23.15■■□□□ 1.3
PCDH1-201ENST00000287008 PRKRIP1Q9H875 184 aaPredicted RBP23.15■■□□□ 1.3
PCDH1-201ENST00000287008 SYNJ2O15056 1496 aa23.14■■□□□ 1.3
PCDH1-201ENST00000287008 NEXNQ0ZGT2 675 aa23.13■■□□□ 1.29
PCDH1-201ENST00000287008 CFTRP13569 1480 aa23.13■■□□□ 1.29
PCDH1-201ENST00000287008 MSH5O43196 834 aa23.13■■□□□ 1.29
PCDH1-201ENST00000287008 E9PSI1 815 aa23.11■■□□□ 1.29
PCDH1-201ENST00000287008 MEX3CQ5U5Q3 659 aaKnown RBP23.11■■□□□ 1.29
PCDH1-201ENST00000287008 MRC2Q9UBG0 1479 aa23.11■■□□□ 1.29
PCDH1-201ENST00000287008 SYTL4Q96C24 671 aaPredicted RBP23.11■■□□□ 1.29
PCDH1-201ENST00000287008 CUX1P39880 1505 aa23.11■■□□□ 1.29
PCDH1-201ENST00000287008 HTATSF1O43719 755 aaKnown RBP23.1■■□□□ 1.29
PCDH1-201ENST00000287008 BCL2L13Q9BXK5 485 aa23.1■■□□□ 1.29
PCDH1-201ENST00000287008 APAF1O14727 1248 aa23.1■■□□□ 1.29
PCDH1-201ENST00000287008 NESP48681 1621 aa23.1■■□□□ 1.29
PCDH1-201ENST00000287008 RAPGEF4Q8WZA2 1011 aa23.09■■□□□ 1.29
PCDH1-201ENST00000287008 TOMM22Q9NS69 142 aa23.09■■□□□ 1.29
PCDH1-201ENST00000287008 EIF2S2P20042 333 aaKnown RBP23.08■■□□□ 1.29
PCDH1-201ENST00000287008 MFAP1P55081 439 aaKnown RBP23.08■■□□□ 1.29
PCDH1-201ENST00000287008 TXNDC2Q86VQ3 553 aa23.08■■□□□ 1.29
PCDH1-201ENST00000287008 CASKIN1Q8WXD9 1431 aa23.08■■□□□ 1.29
PCDH1-201ENST00000287008 NGEFQ8N5V2 710 aa23.08■■□□□ 1.28
PCDH1-201ENST00000287008 IFT140Q96RY7 1462 aa23.07■■□□□ 1.28
PCDH1-201ENST00000287008 ZKSCAN2Q63HK3 967 aa23.07■■□□□ 1.28
PCDH1-201ENST00000287008 TMEM132EQ6IEE7 984 aa23.06■■□□□ 1.28
PCDH1-201ENST00000287008 PRDM2Q13029 1718 aa23.06■■□□□ 1.28
PCDH1-201ENST00000287008 ARHGAP5Q13017 1502 aa23.06■■□□□ 1.28
PCDH1-201ENST00000287008 GBP4Q96PP9 640 aa23.05■■□□□ 1.28
PCDH1-201ENST00000287008 FYCO1Q9BQS8 1478 aa23.04■■□□□ 1.28
PCDH1-201ENST00000287008 NLRP6P59044 892 aa23.04■■□□□ 1.28
PCDH1-201ENST00000287008 HSP90B1P14625 803 aaKnown RBP23.04■■□□□ 1.28
PCDH1-201ENST00000287008 C9orf78Q9NZ63 289 aaPredicted RBP23.04■■□□□ 1.28
PCDH1-201ENST00000287008 NLRP2Q9NX02 1062 aa23.03■■□□□ 1.28
PCDH1-201ENST00000287008 NCOA2Q15596 1464 aa23.03■■□□□ 1.28
PCDH1-201ENST00000287008 LRRC9Q6ZRR7 1453 aa23.03■■□□□ 1.28
PCDH1-201ENST00000287008 CCDC34Q96HJ3 373 aa23.03■■□□□ 1.28
PCDH1-201ENST00000287008 RIPK4P57078 832 aa23.03■■□□□ 1.28
PCDH1-201ENST00000287008 MIA2Q96PC5 1412 aa23.02■■□□□ 1.28
PCDH1-201ENST00000287008 DDX58O95786 925 aaKnown RBP23.01■■□□□ 1.27
PCDH1-201ENST00000287008 PROSER2Q86WR7 435 aaPredicted RBP23.01■■□□□ 1.27
PCDH1-201ENST00000287008 THEMISQ8N1K5 641 aaPredicted RBP23.01■■□□□ 1.27
PCDH1-201ENST00000287008 SLKQ9H2G2 1235 aaPredicted RBP23.01■■□□□ 1.27
PCDH1-201ENST00000287008 GGNBP2Q9H3C7 697 aa23.01■■□□□ 1.27
PCDH1-201ENST00000287008 CABP2Q9NPB3 220 aa22.99■■□□□ 1.27
PCDH1-201ENST00000287008 CFAP70Q5T0N1 1121 aa22.99■■□□□ 1.27
PCDH1-201ENST00000287008 DRC7Q8IY82 874 aa22.98■■□□□ 1.27
PCDH1-201ENST00000287008 KIF3AQ9Y496 699 aa22.97■■□□□ 1.27
PCDH1-201ENST00000287008 API5Q9BZZ5 524 aaKnown RBP22.97■■□□□ 1.27
PCDH1-201ENST00000287008 NUTM2GQ5VZR2 741 aa22.97■■□□□ 1.27
PCDH1-201ENST00000287008 GPRASP1Q5JY77 1395 aa22.97■■□□□ 1.27
PCDH1-201ENST00000287008 ANKRD45Q5TZF3 282 aa22.96■■□□□ 1.27
PCDH1-201ENST00000287008 KIF21BO75037 1637 aa22.95■■□□□ 1.26
PCDH1-201ENST00000287008 LRRFIP1Q32MZ4 808 aaKnown RBP22.95■■□□□ 1.26
PCDH1-201ENST00000287008 NECTIN2Q92692 538 aa22.95■■□□□ 1.26
PCDH1-201ENST00000287008 FKBP5Q13451 457 aaPredicted RBP22.95■■□□□ 1.26
PCDH1-201ENST00000287008 SCAPERQ9BY12 1400 aa22.95■■□□□ 1.26
PCDH1-201ENST00000287008 PTMSP20962 102 aa22.95■■□□□ 1.26
PCDH1-201ENST00000287008 RBM19Q9Y4C8 960 aaKnown RBP22.94■■□□□ 1.26
PCDH1-201ENST00000287008 TOPBP1Q92547 1522 aa22.94■■□□□ 1.26
PCDH1-201ENST00000287008 RILPL2Q969X0 211 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms