RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SRPK2P78362 688 aaKnown RBP17.12■□□□□ 0.33
CCDC88A-201ENST00000263630 SENP3-EIF4A1A0A087X0R7 540 aa17.12■□□□□ 0.33
CCDC88A-201ENST00000263630 SYNE3Q6ZMZ3 975 aa17.12■□□□□ 0.33
CCDC88A-201ENST00000263630 ZNF592Q92610 1267 aa17.12■□□□□ 0.33
CCDC88A-201ENST00000263630 CTDP1Q9Y5B0 961 aaPredicted RBP17.12■□□□□ 0.33
CCDC88A-201ENST00000263630 MFAP1P55081 439 aaKnown RBP17.11■□□□□ 0.33
CCDC88A-201ENST00000263630 TOMM22Q9NS69 142 aa17.11■□□□□ 0.33
CCDC88A-201ENST00000263630 ZNF330Q9Y3S2 320 aaPredicted RBP17.11■□□□□ 0.33
CCDC88A-201ENST00000263630 RBM19Q9Y4C8 960 aaKnown RBP17.11■□□□□ 0.33
CCDC88A-201ENST00000263630 ERCC4Q92889 916 aaPredicted RBP17.1■□□□□ 0.33
CCDC88A-201ENST00000263630 KCNH8Q96L42 1107 aa17.1■□□□□ 0.33
CCDC88A-201ENST00000263630 CPLX2Q6PUV4 134 aaKnown RBP17.1■□□□□ 0.33
CCDC88A-201ENST00000263630 TRIM34Q9BYJ4 488 aa17.1■□□□□ 0.33
CCDC88A-201ENST00000263630 TRIM29Q14134 588 aa17.09■□□□□ 0.33
CCDC88A-201ENST00000263630 MTERF4Q7Z6M4 381 aaKnown RBP17.09■□□□□ 0.33
CCDC88A-201ENST00000263630 HDGFL2Q7Z4V5 671 aaPredicted RBP17.09■□□□□ 0.33
CCDC88A-201ENST00000263630 CCDC43Q96MW1 224 aaKnown RBP17.08■□□□□ 0.33
CCDC88A-201ENST00000263630 KTN1Q86UP2 1357 aaKnown RBP17.08■□□□□ 0.33
CCDC88A-201ENST00000263630 CCDC66A2RUB6 948 aa17.07■□□□□ 0.32
CCDC88A-201ENST00000263630 NOL10Q9BSC4 688 aaKnown RBP17.07■□□□□ 0.32
CCDC88A-201ENST00000263630 IPO9Q96P70 1041 aaKnown RBP17.07■□□□□ 0.32
CCDC88A-201ENST00000263630 HSP90AB2PQ58FF8 381 aa17.06■□□□□ 0.32
CCDC88A-201ENST00000263630 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.06■□□□□ 0.32
CCDC88A-201ENST00000263630 CAGE1Q8TC20 777 aa17.06■□□□□ 0.32
CCDC88A-201ENST00000263630 NAP1L1P55209 391 aaKnown RBP17.06■□□□□ 0.32
CCDC88A-201ENST00000263630 CLIP1P30622 1438 aa17.06■□□□□ 0.32
CCDC88A-201ENST00000263630 INCENPQ9NQS7 918 aa17.05■□□□□ 0.32
CCDC88A-201ENST00000263630 ANKRD18AQ8IVF6 992 aa17.05■□□□□ 0.32
CCDC88A-201ENST00000263630 EPS15P42566 896 aa17.05■□□□□ 0.32
CCDC88A-201ENST00000263630 R3HCC1Q9Y3T6 440 aaKnown RBP17.05■□□□□ 0.32
CCDC88A-201ENST00000263630 SOX12O15370 315 aa17.04■□□□□ 0.32
CCDC88A-201ENST00000263630 CFDP1Q9UEE9 299 aaPredicted RBP17.04■□□□□ 0.32
CCDC88A-201ENST00000263630 GOLGA6L7A0A1B0GV03 622 aa17.04■□□□□ 0.32
CCDC88A-201ENST00000263630 CSB-PGBD3P0DP91 1061 aa17.03■□□□□ 0.32
CCDC88A-201ENST00000263630 RCAN3Q9UKA8 241 aa17.03■□□□□ 0.32
CCDC88A-201ENST00000263630 MNS1Q8NEH6 495 aa17.03■□□□□ 0.32
CCDC88A-201ENST00000263630 DDX49Q9Y6V7 483 aaKnown RBP17.03■□□□□ 0.32
CCDC88A-201ENST00000263630 ZCCHC6Q5VYS8 1495 aaKnown RBP17.02■□□□□ 0.32
CCDC88A-201ENST00000263630 GTF2E1P29083 439 aaPredicted RBP17.01■□□□□ 0.31
CCDC88A-201ENST00000263630 LMOD3Q0VAK6 560 aa17.01■□□□□ 0.31
CCDC88A-201ENST00000263630 MCTP1Q6DN14 999 aa17■□□□□ 0.31
CCDC88A-201ENST00000263630 NOL8Q76FK4 1167 aaKnown RBP17■□□□□ 0.31
CCDC88A-201ENST00000263630 CCER2I3L3R5 266 aa17■□□□□ 0.31
CCDC88A-201ENST00000263630 SMC4Q9NTJ3 1288 aa16.99■□□□□ 0.31
CCDC88A-201ENST00000263630 DIAPH3Q9NSV4 1193 aa16.98■□□□□ 0.31
CCDC88A-201ENST00000263630 DYDC1Q8WWB3 177 aa16.98■□□□□ 0.31
CCDC88A-201ENST00000263630 NAT10Q9H0A0 1025 aaKnown RBP16.98■□□□□ 0.31
CCDC88A-201ENST00000263630 ZFYVE27Q5T4F4 411 aa16.98■□□□□ 0.31
CCDC88A-201ENST00000263630 LEKR1Q6ZMV7 388 aa16.98■□□□□ 0.31
CCDC88A-201ENST00000263630 PLCD4Q9BRC7 762 aa16.98■□□□□ 0.31
CCDC88A-201ENST00000263630 PAK3O75914 559 aaPredicted RBP16.97■□□□□ 0.31
CCDC88A-201ENST00000263630 ERLIN2O94905 339 aa16.97■□□□□ 0.31
CCDC88A-201ENST00000263630 EIF3AQ14152 1382 aaKnown RBP16.97■□□□□ 0.31
CCDC88A-201ENST00000263630 CWC22Q9HCG8 908 aaKnown RBP16.96■□□□□ 0.31
CCDC88A-201ENST00000263630 FAM13BQ9NYF5 915 aa16.96■□□□□ 0.31
CCDC88A-201ENST00000263630 WWC2Q6AWC2 1192 aa16.96■□□□□ 0.31
CCDC88A-201ENST00000263630 SEPT7Q16181 437 aaKnown RBP16.95■□□□□ 0.3
CCDC88A-201ENST00000263630 SASS6Q6UVJ0 657 aa16.95■□□□□ 0.3
CCDC88A-201ENST00000263630 RUFY2Q8WXA3 655 aa16.95■□□□□ 0.3
CCDC88A-201ENST00000263630 OFD1O75665 1012 aa16.95■□□□□ 0.3
CCDC88A-201ENST00000263630 EZRP15311 586 aaKnown RBP16.95■□□□□ 0.3
CCDC88A-201ENST00000263630 GOLGA6L10A6NI86 522 aa16.94■□□□□ 0.3
CCDC88A-201ENST00000263630 HSP90AB3PQ58FF7 597 aa16.94■□□□□ 0.3
CCDC88A-201ENST00000263630 U2AF1L5P0DN76 240 aaPredicted RBP16.94■□□□□ 0.3
CCDC88A-201ENST00000263630 U2AF1Q01081 240 aaKnown RBP eCLIP16.94■□□□□ 0.3
CCDC88A-201ENST00000263630 FOXD4L1Q9NU39 408 aa16.94■□□□□ 0.3
CCDC88A-201ENST00000263630 PAF1Q8N7H5 531 aa16.93■□□□□ 0.3
CCDC88A-201ENST00000263630 CCP110O43303 1012 aa16.93■□□□□ 0.3
CCDC88A-201ENST00000263630 NEFHP12036 1026 aa16.93■□□□□ 0.3
CCDC88A-201ENST00000263630 RALBP1Q15311 655 aa16.93■□□□□ 0.3
CCDC88A-201ENST00000263630 GSE1Q14687 1217 aa16.93■□□□□ 0.3
CCDC88A-201ENST00000263630 PHLDB1Q86UU1 1377 aa16.93■□□□□ 0.3
CCDC88A-201ENST00000263630 FOXD4L5Q5VV16 416 aaPredicted RBP16.92■□□□□ 0.3
CCDC88A-201ENST00000263630 FOXD4L4Q8WXT5 416 aaPredicted RBP16.92■□□□□ 0.3
CCDC88A-201ENST00000263630 ERICH2A1L162 156 aa16.92■□□□□ 0.3
CCDC88A-201ENST00000263630 SLC4A10Q6U841 1118 aa16.92■□□□□ 0.3
CCDC88A-201ENST00000263630 TSPYL1Q9H0U9 437 aa16.92■□□□□ 0.3
CCDC88A-201ENST00000263630 CPLX1O14810 134 aa16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 KIAA0754O94854 1291 aa16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 GOLGA3Q08378 1498 aa16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 ZKSCAN1P17029 563 aaPredicted RBP16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 IFT57Q9NWB7 429 aa16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 USP8P40818 1118 aa16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 TRDNQ13061 729 aa16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 OLFM4Q6UX06 510 aa16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 DCAF11Q8TEB1 546 aa16.91■□□□□ 0.3
CCDC88A-201ENST00000263630 SCRIBQ14160 1630 aa16.9■□□□□ 0.3
CCDC88A-201ENST00000263630 SAFBQ15424 915 aaKnown RBP eCLIP16.9■□□□□ 0.3
CCDC88A-201ENST00000263630 REC8O95072 547 aa16.89■□□□□ 0.29
CCDC88A-201ENST00000263630 BICD2Q8TD16 824 aa16.89■□□□□ 0.29
CCDC88A-201ENST00000263630 CGNL1Q0VF96 1302 aa16.89■□□□□ 0.29
CCDC88A-201ENST00000263630 RNF20Q5VTR2 975 aa16.89■□□□□ 0.29
CCDC88A-201ENST00000263630 CCDC9Q9Y3X0 531 aaKnown RBP16.89■□□□□ 0.29
CCDC88A-201ENST00000263630 RAD21O60216 631 aa16.89■□□□□ 0.29
CCDC88A-201ENST00000263630 RILPL2Q969X0 211 aa16.88■□□□□ 0.29
CCDC88A-201ENST00000263630 BRMS1Q9HCU9 246 aa16.88■□□□□ 0.29
CCDC88A-201ENST00000263630 FAM43AQ8N2R8 423 aa16.88■□□□□ 0.29
CCDC88A-201ENST00000263630 RABEP1Q15276 862 aa16.87■□□□□ 0.29
CCDC88A-201ENST00000263630 CLASRPQ8N2M8 674 aaKnown RBP16.87■□□□□ 0.29
CCDC88A-201ENST00000263630 SMARCE1Q969G3 411 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms